Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18030

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,044,675	+				+0.1
4,044,675	+				+1.1
4,044,676	-				-1.3
4,044,676	-				+0.4
4,044,750	-				+0.4
4,044,837	+				+1.5
4,044,962	+				+0.3
4,044,967	-				+0.4
4,044,970	+				-0.1
4,044,971	-				-0.3
4,044,989	+				-0.0
4,045,001	-				+0.3
4,045,001	-				-1.3
4,045,010	-				-1.3
4,045,032	+				-0.9
4,045,059	+				+1.2
4,045,059	+				-0.3
4,045,059	+				-0.1
4,045,060	-				-0.5
4,045,060	-				-2.3
4,045,110	+				+1.3
4,045,111	-		HGI48_RS18025	0.11	-0.9
4,045,111	-		HGI48_RS18025	0.11	+1.0
4,045,120	+		HGI48_RS18025	0.13	-0.4
4,045,120	+		HGI48_RS18025	0.13	-0.1
4,045,120	+				+0.7
4,045,121	-		HGI48_RS18025	0.13	+0.1
4,045,121	-		HGI48_RS18025	0.13	-0.9
4,045,121	-				+0.7
4,045,121	-		HGI48_RS18025	0.13	+1.5
4,045,121	-		HGI48_RS18025	0.13	-0.4
4,045,235	-		HGI48_RS18025	0.38	-1.6
4,045,255	-		HGI48_RS18025	0.42	-0.3
4,045,277	+		HGI48_RS18025	0.47	-1.6
4,045,278	-				+2.3
4,045,278	-		HGI48_RS18025	0.47	+0.9
4,045,289	+		HGI48_RS18025	0.50	-0.7
4,045,290	-				+3.3
4,045,290	-		HGI48_RS18025	0.50	+0.8
4,045,290	-		HGI48_RS18025	0.50	+1.0
4,045,290	-		HGI48_RS18025	0.50	+0.1
4,045,290	-		HGI48_RS18025	0.50	+0.7
4,045,306	-		HGI48_RS18025	0.53	-0.6
4,045,324	+		HGI48_RS18025	0.57	-0.1
4,045,325	-		HGI48_RS18025	0.57	-2.4
4,045,325	-				+2.1
4,045,348	+		HGI48_RS18025	0.62	-0.4
4,045,444	+				+0.1
4,045,444	+		HGI48_RS18025	0.83	+0.6
4,045,444	+		HGI48_RS18025	0.83	-1.3
4,045,451	-		HGI48_RS18025	0.85	-3.0
4,045,462	+		HGI48_RS18025	0.87	+0.7
4,045,462	+		HGI48_RS18025	0.87	-0.1
4,045,533	-				-0.3
4,045,551	+				-2.5
4,045,587	-				-0.5
4,045,631	+				+1.4
4,045,641	-				+0.7
4,045,641	-				-0.4
4,045,649	+				-0.0
4,045,650	-				-0.2
4,045,657	+				-0.2
4,045,658	-				+0.6
4,045,658	-				-0.6
4,045,666	+				-0.1
4,045,667	-				-1.3
4,045,667	-				+1.2
4,045,682	+				+0.9
4,045,683	-				-0.3
4,045,716	-				-1.3
4,045,720	+				-1.6
4,045,720	+				+1.7
4,045,720	+				-1.3
4,045,721	-				-0.9
4,045,722	+				-1.1
4,045,722	+				-2.6
4,045,723	-				-0.9
4,045,943	+				+0.7
4,045,943	+		HGI48_RS18030	0.27	-1.9
4,045,946	+		HGI48_RS18030	0.27	-1.5
4,045,946	+				-0.3
4,045,947	-		HGI48_RS18030	0.27	+0.3
4,045,947	-				-0.3
4,045,947	-		HGI48_RS18030	0.27	-1.6
4,046,017	+		HGI48_RS18030	0.34	-0.0
4,046,017	+		HGI48_RS18030	0.34	-2.5
4,046,017	+		HGI48_RS18030	0.34	-1.3
4,046,017	+		HGI48_RS18030	0.34	-1.1
4,046,018	-		HGI48_RS18030	0.35	-1.1
4,046,018	-				-0.3
4,046,018	-				-0.9
4,046,018	-		HGI48_RS18030	0.35	+0.3
4,046,029	+		HGI48_RS18030	0.36	-1.3
4,046,029	+				-0.3
4,046,029	+		HGI48_RS18030	0.36	-0.6
4,046,029	+		HGI48_RS18030	0.36	-2.3
4,046,029	+		HGI48_RS18030	0.36	+0.0
4,046,029	+		HGI48_RS18030	0.36	-1.1
4,046,029	+		HGI48_RS18030	0.36	-0.6
4,046,029	+		HGI48_RS18030	0.36	-0.3
4,046,035	+				+0.1
4,046,035	+		HGI48_RS18030	0.36	-0.9
4,046,035	+		HGI48_RS18030	0.36	-0.1
4,046,035	+		HGI48_RS18030	0.36	-0.9
4,046,036	-		HGI48_RS18030	0.36	-0.3
4,046,036	-		HGI48_RS18030	0.36	-2.1
4,046,036	-		HGI48_RS18030	0.36	-0.9
4,046,036	-		HGI48_RS18030	0.36	-2.3
4,046,036	-		HGI48_RS18030	0.36	-0.2
4,046,036	-		HGI48_RS18030	0.36	-1.6
4,046,036	-		HGI48_RS18030	0.36	-0.3
4,046,125	+		HGI48_RS18030	0.45	-0.7
4,046,125	+		HGI48_RS18030	0.45	-0.8
4,046,126	-		HGI48_RS18030	0.45	-0.1
4,046,126	-		HGI48_RS18030	0.45	-0.4
4,046,126	-		HGI48_RS18030	0.45	-0.1
4,046,276	-		HGI48_RS18030	0.60	-0.4
4,046,348	+		HGI48_RS18030	0.67	+0.5
4,046,348	+		HGI48_RS18030	0.67	+0.2
4,046,348	+		HGI48_RS18030	0.67	-0.5
4,046,431	+				+0.7
4,046,449	+		HGI48_RS18030	0.77	-1.6
4,046,449	+		HGI48_RS18030	0.77	-2.1
4,046,449	+		HGI48_RS18030	0.77	-0.0
4,046,449	+		HGI48_RS18030	0.77	-1.6
4,046,450	-		HGI48_RS18030	0.78	-1.5
4,046,450	-		HGI48_RS18030	0.78	-0.5
4,046,450	-		HGI48_RS18030	0.78	-3.4
4,046,536	+		HGI48_RS18030	0.86	-1.0
4,046,536	+		HGI48_RS18030	0.86	-1.3
4,046,536	+				+0.1
4,046,536	+		HGI48_RS18030	0.86	-1.4
4,046,537	-		HGI48_RS18030	0.86	-1.6
4,046,537	-		HGI48_RS18030	0.86	-0.4
4,046,579	+				+0.7
4,046,607	-				-1.2
4,046,615	+				-0.9
4,046,620	+				-1.7
4,046,620	+				-1.9
4,046,621	-				-2.1
4,046,621	-				+0.1
4,046,621	-				+0.1
4,046,621	-				-1.9
4,046,621	-				-0.7
4,046,748	-				+0.6
4,046,755	+				+1.4
4,046,756	-				-0.6
4,046,791	+				-1.2
4,046,791	+				-0.2
4,046,795	+				-0.9
4,046,841	+				+1.5
4,046,841	+				+0.4
4,046,842	-				-0.7
4,046,842	-				+0.4
4,046,862	+				-0.5
4,046,988	+		HGI48_RS18035	0.14	+1.5
4,047,050	+		HGI48_RS18035	0.27	+0.8
4,047,051	-		HGI48_RS18035	0.27	+0.5
4,047,052	+		HGI48_RS18035	0.27	-0.9
4,047,052	+		HGI48_RS18035	0.27	-1.9
4,047,052	+		HGI48_RS18035	0.27	+0.4
4,047,052	+		HGI48_RS18035	0.27	+0.7
4,047,053	-		HGI48_RS18035	0.27	-1.9
4,047,053	-				-0.9
4,047,053	-		HGI48_RS18035	0.27	-1.9
4,047,053	-		HGI48_RS18035	0.27	-1.3
4,047,053	-		HGI48_RS18035	0.27	-0.1
4,047,053	-		HGI48_RS18035	0.27	-0.7
4,047,138	+		HGI48_RS18035	0.45	-0.1
4,047,138	+				+1.1
4,047,138	+		HGI48_RS18035	0.45	-2.3
4,047,138	+		HGI48_RS18035	0.45	-0.7
4,047,139	-		HGI48_RS18035	0.45	-0.6
4,047,169	+		HGI48_RS18035	0.51	-0.6
4,047,169	+		HGI48_RS18035	0.51	+1.9
4,047,170	-		HGI48_RS18035	0.51	+0.1
4,047,170	-		HGI48_RS18035	0.51	-1.3
4,047,170	-		HGI48_RS18035	0.51	-1.0
4,047,170	-		HGI48_RS18035	0.51	-0.5
4,047,170	-		HGI48_RS18035	0.51	-0.4
4,047,170	-		HGI48_RS18035	0.51	+1.1
4,047,170	-		HGI48_RS18035	0.51	+0.0
4,047,328	+		HGI48_RS18035	0.83	+0.3
4,047,328	+		HGI48_RS18035	0.83	+1.0
4,047,329	-		HGI48_RS18035	0.83	-0.7
4,047,401	+				-0.3
4,047,401	+				-1.1
4,047,402	-				+0.2
4,047,477	+				+2.5
4,047,478	-				+0.2
4,047,574	+				+0.0
4,047,600	+		HGI48_RS18040	0.11	-0.6
4,047,600	+				-0.9
4,047,600	+		HGI48_RS18040	0.11	-0.2
4,047,600	+		HGI48_RS18040	0.11	+0.3
4,047,601	-		HGI48_RS18040	0.11	-1.3
4,047,601	-		HGI48_RS18040	0.11	+0.0
4,047,601	-		HGI48_RS18040	0.11	-0.3
4,047,601	-		HGI48_RS18040	0.11	-1.9
4,047,601	-		HGI48_RS18040	0.11	+1.0
4,047,642	+		HGI48_RS18040	0.13	-1.1
4,047,642	+		HGI48_RS18040	0.13	-0.2
4,047,642	+		HGI48_RS18040	0.13	-1.4
4,047,642	+		HGI48_RS18040	0.13	-0.0
4,047,642	+		HGI48_RS18040	0.13	-0.3
4,047,642	+		HGI48_RS18040	0.13	+1.3
4,047,643	-				+1.9
4,047,643	-		HGI48_RS18040	0.13	-0.1
4,047,643	-				+0.1
4,047,643	-		HGI48_RS18040	0.13	-0.4
4,047,643	-		HGI48_RS18040	0.13	-0.3
4,047,643	-		HGI48_RS18040	0.13	+0.3
4,047,643	-		HGI48_RS18040	0.13	+0.4
4,047,666	+		HGI48_RS18040	0.15	+0.2
4,047,666	+		HGI48_RS18040	0.15	-1.3
4,047,666	+		HGI48_RS18040	0.15	+0.6
4,047,666	+		HGI48_RS18040	0.15	-0.6
4,047,667	-		HGI48_RS18040	0.15	+0.0
4,047,667	-		HGI48_RS18040	0.15	-0.9
4,047,667	-		HGI48_RS18040	0.15	-1.6
4,047,667	-		HGI48_RS18040	0.15	+0.3
4,047,667	-		HGI48_RS18040	0.15	-0.3
4,047,667	-		HGI48_RS18040	0.15	-0.3