Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17585

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,934,915	+		HGI48_RS17580	0.74	-1.0
3,934,924	+				+2.3
3,934,924	+		HGI48_RS17580	0.75	-1.3
3,934,924	+		HGI48_RS17580	0.75	+0.4
3,934,924	+		HGI48_RS17580	0.75	+1.7
3,934,925	-		HGI48_RS17580	0.75	-0.5
3,934,925	-				+1.7
3,934,925	-		HGI48_RS17580	0.75	-1.1
3,934,966	+		HGI48_RS17580	0.78	+0.2
3,934,966	+		HGI48_RS17580	0.78	-0.7
3,934,966	+		HGI48_RS17580	0.78	+0.7
3,934,966	+		HGI48_RS17580	0.78	+0.4
3,934,966	+		HGI48_RS17580	0.78	+0.6
3,934,966	+		HGI48_RS17580	0.78	+0.2
3,934,966	+				+0.7
3,934,966	+		HGI48_RS17580	0.78	-0.6
3,934,966	+		HGI48_RS17580	0.78	-0.3
3,934,966	+		HGI48_RS17580	0.78	-0.6
3,934,966	+		HGI48_RS17580	0.78	+0.7
3,934,966	+		HGI48_RS17580	0.78	-0.1
3,934,967	-		HGI48_RS17580	0.78	-0.9
3,934,967	-		HGI48_RS17580	0.78	+0.3
3,934,967	-		HGI48_RS17580	0.78	-1.0
3,934,967	-		HGI48_RS17580	0.78	-0.6
3,934,967	-		HGI48_RS17580	0.78	-0.2
3,934,967	-		HGI48_RS17580	0.78	-1.3
3,934,967	-		HGI48_RS17580	0.78	+0.3
3,934,967	-		HGI48_RS17580	0.78	-0.5
3,934,967	-		HGI48_RS17580	0.78	-1.6
3,934,967	-		HGI48_RS17580	0.78	+0.0
3,934,967	-		HGI48_RS17580	0.78	-0.5
3,934,967	-		HGI48_RS17580	0.78	+0.5
3,934,967	-		HGI48_RS17580	0.78	+0.5
3,934,979	-		HGI48_RS17580	0.79	-0.2
3,934,994	+		HGI48_RS17580	0.80	+0.8
3,934,995	-		HGI48_RS17580	0.80	+0.8
3,935,124	+		HGI48_RS17580	0.90	-1.6
3,935,124	+		HGI48_RS17580	0.90	+0.1
3,935,124	+		HGI48_RS17580	0.90	+0.4
3,935,124	+		HGI48_RS17580	0.90	+1.4
3,935,125	-		HGI48_RS17580	0.90	-0.1
3,935,125	-		HGI48_RS17580	0.90	+0.2
3,935,207	+				+0.7
3,935,207	+				-0.2
3,935,207	+				-0.3
3,935,207	+				-0.2
3,935,208	-				-0.7
3,935,216	+				-0.3
3,935,292	-				+0.7
3,935,305	+				-0.4
3,935,306	-				-0.6
3,935,306	-				-0.0
3,935,306	-				+0.7
3,935,315	+				+1.0
3,935,315	+				-1.3
3,935,316	-				+0.7
3,935,316	-				-2.2
3,935,316	-				-0.5
3,935,324	+				-0.2
3,935,324	+				+0.4
3,935,325	-				-0.3
3,935,520	+				-0.9
3,935,521	-				+0.3
3,935,525	+				+1.1
3,935,525	+				-1.5
3,935,577	+				-0.4
3,935,577	+				+0.1
3,935,578	-				-0.5
3,935,578	-				-1.9
3,935,619	+				-1.6
3,935,619	+				-0.1
3,935,619	+				-0.0
3,935,620	-				+1.3
3,935,627	-				-1.2
3,935,655	+				-0.3
3,935,655	+				+0.2
3,935,655	+				+1.4
3,935,656	-				-0.6
3,935,656	-				+0.7
3,935,659	+				-0.2
3,935,659	+				-1.9
3,935,659	+				-1.9
3,935,659	+				-1.2
3,935,660	-				+0.7
3,935,660	-				+0.0
3,935,660	-				-1.6
3,935,718	+		HGI48_RS17585	0.13	-0.0
3,935,718	+		HGI48_RS17585	0.13	+2.2
3,935,718	+		HGI48_RS17585	0.13	-1.9
3,935,718	+		HGI48_RS17585	0.13	+1.8
3,935,719	-		HGI48_RS17585	0.13	+0.9
3,935,778	+		HGI48_RS17585	0.26	+1.1
3,935,951	-				+0.7
3,935,952	+		HGI48_RS17585	0.62	-1.6
3,935,953	-		HGI48_RS17585	0.62	-0.1
3,935,974	+		HGI48_RS17585	0.67	-0.9
3,935,974	+		HGI48_RS17585	0.67	+0.7
3,935,974	+		HGI48_RS17585	0.67	-1.3
3,935,974	+		HGI48_RS17585	0.67	-0.0
3,935,975	-		HGI48_RS17585	0.67	+0.2
3,935,975	-		HGI48_RS17585	0.67	-0.6
3,935,993	+		HGI48_RS17585	0.71	+0.4
3,936,155	+				+2.9
3,936,156	-				-0.3
3,936,173	-				+0.4
3,936,208	+				+1.0
3,936,226	+				-0.3
3,936,496	+		HGI48_RS17590	0.16	-1.1
3,936,496	+		HGI48_RS17590	0.16	+1.3
3,936,496	+		HGI48_RS17590	0.16	-0.0
3,936,496	+		HGI48_RS17590	0.16	-1.9
3,936,496	+		HGI48_RS17590	0.16	+0.4
3,936,496	+		HGI48_RS17590	0.16	-1.3
3,936,496	+		HGI48_RS17590	0.16	-0.5
3,936,497	-		HGI48_RS17590	0.16	+1.0
3,936,497	-		HGI48_RS17590	0.16	-0.9
3,936,497	-		HGI48_RS17590	0.16	-2.5
3,936,497	-				+0.7
3,936,557	+				+1.1
3,936,598	+		HGI48_RS17590	0.33	-0.3
3,936,599	-		HGI48_RS17590	0.33	+0.5
3,936,611	+		HGI48_RS17590	0.35	-1.2
3,936,611	+		HGI48_RS17590	0.35	-2.5
3,936,614	+		HGI48_RS17590	0.35	-0.1
3,936,615	-		HGI48_RS17590	0.35	-0.4
3,936,706	-		HGI48_RS17590	0.50	-1.3
3,936,763	+		HGI48_RS17590	0.59	-0.3
3,936,820	+		HGI48_RS17590	0.69	+1.5
3,936,821	-		HGI48_RS17590	0.69	-0.5
3,936,833	+		HGI48_RS17590	0.71	-0.1
3,936,833	+		HGI48_RS17590	0.71	-1.8
3,936,834	-		HGI48_RS17590	0.71	-0.4
3,936,834	-		HGI48_RS17590	0.71	-0.9
3,936,837	+				+1.4
3,936,838	-		HGI48_RS17590	0.72	-0.2
3,936,838	-		HGI48_RS17590	0.72	-0.0
3,936,838	-		HGI48_RS17590	0.72	-1.1
3,936,888	+		HGI48_RS17590	0.80	+0.5
3,936,888	+		HGI48_RS17590	0.80	-0.0
3,936,888	+		HGI48_RS17590	0.80	+2.0
3,936,888	+		HGI48_RS17590	0.80	-0.7
3,936,888	+		HGI48_RS17590	0.80	-0.5
3,936,888	+				+0.1
3,936,889	-		HGI48_RS17590	0.80	+0.1
3,936,889	-		HGI48_RS17590	0.80	-0.6
3,936,889	-		HGI48_RS17590	0.80	+1.5
3,936,889	-				+1.1
3,936,924	+		HGI48_RS17590	0.86	+0.2
3,936,924	+		HGI48_RS17590	0.86	+0.2
3,937,001	+				-0.8
3,937,003	+				-1.2
3,937,003	+				+0.7
3,937,030	+				-0.6
3,937,030	+				+1.5
3,937,030	+				+0.7
3,937,030	+				-1.4
3,937,030	+				-1.3
3,937,031	-				+0.7
3,937,031	-				+1.3
3,937,031	-				-1.9
3,937,031	-				+0.3
3,937,032	+				+0.4
3,937,032	+				-0.4
3,937,032	+				+1.0
3,937,032	+				-0.4
3,937,033	-				+1.7
3,937,033	-				-1.5
3,937,033	-				+0.5
3,937,089	+				-1.0