Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16300

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,654,291	-				-0.3
3,654,291	-				+0.9
3,654,291	-				+0.5
3,654,293	-				-0.0
3,654,293	-				-0.2
3,654,293	-				+0.5
3,654,356	+				-1.9
3,654,356	+				-0.2
3,654,362	+				-1.6
3,654,362	+				+0.9
3,654,363	-				-1.5
3,654,364	+				+0.2
3,654,364	+				-1.0
3,654,365	-				-1.2
3,654,380	+				-0.0
3,654,391	+				-0.6
3,654,397	+				-1.0
3,654,397	+				+3.1
3,654,397	+				-0.5
3,654,398	-				+0.2
3,654,398	-				-0.3
3,654,398	-				-1.0
3,654,417	+				-2.0
3,654,417	+				-0.9
3,654,418	-				+0.1
3,654,418	-				-0.2
3,654,431	+				-1.0
3,654,431	+				-2.0
3,654,432	-				-0.1
3,654,454	+				-0.0
3,654,454	+				-0.0
3,654,501	+				+2.5
3,654,502	-		HGI48_RS16295	0.13	-0.3
3,654,502	-		HGI48_RS16295	0.13	-0.5
3,654,504	+				+1.3
3,654,545	+				+1.0
3,654,545	+		HGI48_RS16295	0.18	-1.2
3,654,545	+		HGI48_RS16295	0.18	-0.6
3,654,546	-		HGI48_RS16295	0.19	-1.8
3,654,546	-		HGI48_RS16295	0.19	-0.6
3,654,546	-		HGI48_RS16295	0.19	+0.5
3,654,546	-		HGI48_RS16295	0.19	-1.0
3,654,546	-		HGI48_RS16295	0.19	-0.1
3,654,554	-		HGI48_RS16295	0.20	-0.4
3,654,626	-		HGI48_RS16295	0.29	+0.3
3,654,642	+		HGI48_RS16295	0.31	+1.5
3,654,642	+		HGI48_RS16295	0.31	-0.4
3,654,643	-		HGI48_RS16295	0.31	-2.6
3,654,683	+		HGI48_RS16295	0.36	-1.1
3,654,683	+		HGI48_RS16295	0.36	-2.0
3,654,683	+		HGI48_RS16295	0.36	-0.6
3,654,683	+		HGI48_RS16295	0.36	-0.7
3,654,683	+		HGI48_RS16295	0.36	+0.5
3,654,683	+		HGI48_RS16295	0.36	-1.3
3,654,684	-		HGI48_RS16295	0.36	-1.5
3,654,684	-		HGI48_RS16295	0.36	-1.8
3,654,684	-		HGI48_RS16295	0.36	-1.2
3,654,684	-		HGI48_RS16295	0.36	+0.5
3,654,701	-				+1.5
3,654,737	-				+1.0
3,654,737	-		HGI48_RS16295	0.43	+0.5
3,654,771	+		HGI48_RS16295	0.47	-0.5
3,654,771	+		HGI48_RS16295	0.47	-1.5
3,654,771	+				+2.4
3,654,772	-		HGI48_RS16295	0.47	-0.2
3,654,824	+		HGI48_RS16295	0.54	-0.7
3,654,824	+		HGI48_RS16295	0.54	-0.9
3,654,824	+		HGI48_RS16295	0.54	-1.3
3,654,824	+		HGI48_RS16295	0.54	-0.8
3,654,825	-		HGI48_RS16295	0.54	+0.5
3,654,825	-		HGI48_RS16295	0.54	-1.5
3,654,825	-		HGI48_RS16295	0.54	+0.2
3,654,851	+		HGI48_RS16295	0.57	-0.7
3,654,851	+		HGI48_RS16295	0.57	-0.3
3,654,851	+		HGI48_RS16295	0.57	-0.0
3,654,851	+		HGI48_RS16295	0.57	-0.1
3,654,852	-		HGI48_RS16295	0.57	-1.0
3,654,852	-				-1.0
3,654,852	-		HGI48_RS16295	0.57	-1.0
3,654,979	+		HGI48_RS16295	0.73	-1.8
3,654,980	-				+1.0
3,654,983	+		HGI48_RS16295	0.74	+0.1
3,654,983	+		HGI48_RS16295	0.74	-0.3
3,654,983	+		HGI48_RS16295	0.74	+0.5
3,654,983	+		HGI48_RS16295	0.74	-1.9
3,654,983	+		HGI48_RS16295	0.74	-0.5
3,654,983	+		HGI48_RS16295	0.74	-2.3
3,654,984	-		HGI48_RS16295	0.74	-0.3
3,654,984	-		HGI48_RS16295	0.74	-1.5
3,654,984	-		HGI48_RS16295	0.74	+0.1
3,654,984	-		HGI48_RS16295	0.74	-1.3
3,654,984	-		HGI48_RS16295	0.74	-0.7
3,655,022	-		HGI48_RS16295	0.78	-1.2
3,655,055	+		HGI48_RS16295	0.83	-2.0
3,655,056	-		HGI48_RS16295	0.83	+0.9
3,655,056	-		HGI48_RS16295	0.83	-2.0
3,655,079	+		HGI48_RS16295	0.86	+0.3
3,655,079	+		HGI48_RS16295	0.86	-0.0
3,655,080	-		HGI48_RS16295	0.86	-0.3
3,655,107	+		HGI48_RS16295	0.89	-2.3
3,655,108	-		HGI48_RS16295	0.89	+0.1
3,655,108	-		HGI48_RS16295	0.89	-1.0
3,655,108	-		HGI48_RS16295	0.89	+0.3
3,655,108	-		HGI48_RS16295	0.89	-1.2
3,655,110	+		HGI48_RS16295	0.90	-2.0
3,655,110	+		HGI48_RS16295	0.90	-0.2
3,655,110	+		HGI48_RS16295	0.90	-1.5
3,655,111	-		HGI48_RS16295	0.90	-0.5
3,655,151	+				+0.1
3,655,170	+				-0.9
3,655,171	-				-1.5
3,655,171	-				-1.0
3,655,171	-				+0.2
3,655,226	+				+0.1
3,655,226	+				+0.4
3,655,227	-				-0.3
3,655,239	+				-0.4
3,655,240	-				-0.2
3,655,266	+				-0.0
3,655,266	+				+0.1
3,655,266	+				+0.4
3,655,274	+				+0.3
3,655,275	-				+0.5
3,655,275	-				+0.1
3,655,286	-				+1.1
3,655,413	+				+0.5
3,655,413	+		HGI48_RS16300	0.24	-1.2
3,655,413	+		HGI48_RS16300	0.24	-1.3
3,655,413	+		HGI48_RS16300	0.24	+1.4
3,655,417	+		HGI48_RS16300	0.25	+0.5
3,655,469	-		HGI48_RS16300	0.35	+0.7
3,655,542	+		HGI48_RS16300	0.49	+0.5
3,655,542	+		HGI48_RS16300	0.49	-0.6
3,655,543	-		HGI48_RS16300	0.49	+0.5
3,655,543	-		HGI48_RS16300	0.49	+0.1
3,655,564	+		HGI48_RS16300	0.53	+0.1
3,655,565	-		HGI48_RS16300	0.53	+1.1
3,655,574	-				+0.5
3,655,615	+		HGI48_RS16300	0.63	-1.3
3,655,616	-		HGI48_RS16300	0.63	+1.4
3,655,675	+		HGI48_RS16300	0.75	-1.2
3,655,675	+		HGI48_RS16300	0.75	+0.4
3,655,676	-		HGI48_RS16300	0.75	+1.1
3,655,692	-		HGI48_RS16300	0.78	+0.7
3,655,692	-		HGI48_RS16300	0.78	-1.0
3,655,765	+				-1.0
3,655,766	-				+0.0
3,655,766	-				-1.0
3,655,772	-				+1.7
3,655,783	+				-0.1
3,655,789	+				-0.2
3,655,790	-				-0.0
3,655,790	-				-0.5
3,655,790	-				+0.1
3,655,793	+				-0.3
3,655,793	+				-1.8
3,655,793	+				+0.2
3,655,793	+				+0.9
3,655,793	+				-1.0
3,655,793	+				-0.2
3,655,793	+				-1.5
3,655,793	+				-0.3
3,655,794	-				+0.5
3,655,794	-				+0.1
3,655,794	-				-1.2
3,655,794	-				+0.1
3,655,794	-				+0.3
3,655,794	-				-1.0
3,655,797	-				-1.0
3,655,797	-				-0.3
3,655,797	-				+0.3
3,655,810	+				+1.5
3,655,810	+				-0.0
3,655,811	-				-2.0
3,655,811	-				+0.7
3,655,893	+				+1.5
3,655,893	+				-1.8
3,655,893	+				+0.1
3,655,893	+				-0.0
3,655,893	+				+0.5
3,655,894	-				-0.8
3,655,894	-				+0.5
3,655,894	-				+2.3
3,655,896	+				+0.5
3,655,897	-				+0.5
3,655,909	-				+1.9
3,655,912	-				+0.2
3,655,991	+				-0.5
3,656,007	-				-1.0
3,656,007	-				+1.1
3,656,079	+				+0.5
3,656,080	-				-1.0
3,656,261	+		HGI48_RS16305	0.17	-1.8
3,656,268	+		HGI48_RS16305	0.18	+0.5
3,656,268	+		HGI48_RS16305	0.18	-1.6
3,656,269	-		HGI48_RS16305	0.18	+0.5
3,656,269	-		HGI48_RS16305	0.18	-0.3
3,656,269	-				-0.5
3,656,306	-				-1.0
3,656,389	-		HGI48_RS16305	0.26	+1.4
3,656,422	-		HGI48_RS16305	0.28	+0.2
3,656,422	-		HGI48_RS16305	0.28	-1.3
3,656,565	+		HGI48_RS16305	0.37	+0.5
3,656,568	-		HGI48_RS16305	0.37	-0.5
3,656,568	-		HGI48_RS16305	0.37	-1.9
3,656,645	+		HGI48_RS16305	0.42	-1.0
3,656,645	+		HGI48_RS16305	0.42	-0.5
3,656,646	-		HGI48_RS16305	0.42	-0.3
3,656,646	-		HGI48_RS16305	0.42	-0.5
3,656,676	+		HGI48_RS16305	0.44	+1.4
3,656,723	+		HGI48_RS16305	0.47	-1.4
3,656,723	+				+1.1
3,656,768	+		HGI48_RS16305	0.50	-0.5
3,656,768	+		HGI48_RS16305	0.50	-0.7