Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15790

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,553,141	+		HGI48_RS15785	0.88	+0.5
3,553,141	+		HGI48_RS15785	0.88	+0.3
3,553,172	+		HGI48_RS15785	0.90	+0.1
3,553,172	+		HGI48_RS15785	0.90	-0.3
3,553,172	+		HGI48_RS15785	0.90	+0.5
3,553,172	+		HGI48_RS15785	0.90	-1.8
3,553,173	-		HGI48_RS15785	0.90	-0.5
3,553,173	-		HGI48_RS15785	0.90	-0.9
3,553,293	+				-0.0
3,553,294	-				+0.8
3,553,296	+				+0.5
3,553,297	-				-1.8
3,553,297	-				+0.4
3,553,299	+				-0.4
3,553,302	+				+1.0
3,553,302	+				+1.1
3,553,303	-				-0.2
3,553,311	+				-0.9
3,553,311	+				+0.1
3,553,311	+				+0.1
3,553,313	+				-0.5
3,553,328	+				-0.5
3,553,400	+				+0.9
3,553,400	+				+0.6
3,553,400	+				-1.8
3,553,400	+				+0.8
3,553,400	+				-0.0
3,553,400	+				+1.3
3,553,400	+				-2.1
3,553,401	-				-0.2
3,553,401	-				+0.9
3,553,401	-				+0.4
3,553,401	-				-0.6
3,553,401	-				-0.1
3,553,401	-				+0.3
3,553,446	+				+0.3
3,553,447	-				-0.2
3,553,493	+				+0.2
3,553,493	+				+0.7
3,553,494	-				+0.8
3,553,499	+				+0.1
3,553,513	+				-0.3
3,553,513	+				-1.8
3,553,525	+				+0.5
3,553,525	+				-0.8
3,553,545	+				-1.5
3,553,552	+				-0.1
3,553,553	-				-1.1
3,553,568	-				-0.8
3,553,568	-				-0.5
3,553,583	-				+1.1
3,553,583	-				-1.7
3,553,592	-				+1.3
3,553,595	+				-0.2
3,553,603	+				-1.1
3,553,603	+				+0.1
3,553,603	+				-1.2
3,553,603	+				+0.1
3,553,688	+				+1.3
3,553,860	-				+0.0
3,553,891	-				+0.4
3,553,900	+				+0.4
3,553,901	-				+1.2
3,553,901	-				-0.6
3,553,945	+				-0.5
3,553,986	+				-0.8
3,553,987	-				-0.5
3,554,001	+				+0.5
3,554,001	+				+0.8
3,554,056	+				+1.2
3,554,056	+				+1.2
3,554,057	-				+0.5
3,554,089	-				+0.8
3,554,089	-				-0.5
3,554,089	-				-0.1
3,554,104	+				+1.7
3,554,183	+		HGI48_RS15790	0.10	+1.3
3,554,183	+		HGI48_RS15790	0.10	-1.4
3,554,243	+		HGI48_RS15790	0.18	+0.5
3,554,243	+		HGI48_RS15790	0.18	-0.5
3,554,243	+		HGI48_RS15790	0.18	-1.8
3,554,243	+		HGI48_RS15790	0.18	+0.6
3,554,244	-		HGI48_RS15790	0.18	+0.9
3,554,244	-		HGI48_RS15790	0.18	+1.1
3,554,244	-		HGI48_RS15790	0.18	-0.2
3,554,244	-		HGI48_RS15790	0.18	-2.1
3,554,244	-		HGI48_RS15790	0.18	-1.8
3,554,244	-		HGI48_RS15790	0.18	-0.7
3,554,248	+				+2.1
3,554,248	+		HGI48_RS15790	0.18	+1.2
3,554,248	+		HGI48_RS15790	0.18	+0.2
3,554,249	-		HGI48_RS15790	0.18	-0.1
3,554,249	-		HGI48_RS15790	0.18	+0.4
3,554,249	-		HGI48_RS15790	0.18	-0.4
3,554,249	-		HGI48_RS15790	0.18	+0.2
3,554,312	+		HGI48_RS15790	0.26	+1.1
3,554,312	+		HGI48_RS15790	0.26	+0.5
3,554,312	+		HGI48_RS15790	0.26	-2.1
3,554,312	+		HGI48_RS15790	0.26	-0.6
3,554,313	-				+1.5
3,554,313	-		HGI48_RS15790	0.27	+0.7
3,554,438	+		HGI48_RS15790	0.42	+0.9
3,554,438	+		HGI48_RS15790	0.42	-0.6
3,554,438	+		HGI48_RS15790	0.42	+0.7
3,554,439	-		HGI48_RS15790	0.42	+1.1
3,554,556	-		HGI48_RS15790	0.57	-0.1
3,554,633	+		HGI48_RS15790	0.67	+0.1
3,554,633	+		HGI48_RS15790	0.67	+1.0
3,554,633	+		HGI48_RS15790	0.67	+0.1
3,554,634	-		HGI48_RS15790	0.67	-0.8
3,554,634	-		HGI48_RS15790	0.67	+0.6
3,554,634	-		HGI48_RS15790	0.67	-1.1
3,554,634	-		HGI48_RS15790	0.67	-0.6
3,554,638	-		HGI48_RS15790	0.68	+0.5
3,554,638	-		HGI48_RS15790	0.68	-0.4
3,554,668	+		HGI48_RS15790	0.71	+0.5
3,554,668	+		HGI48_RS15790	0.71	-0.3
3,554,668	+		HGI48_RS15790	0.71	-0.5
3,554,669	-		HGI48_RS15790	0.71	-0.1
3,554,669	-		HGI48_RS15790	0.71	+0.1
3,554,669	-		HGI48_RS15790	0.71	-0.0
3,554,669	-				+1.1
3,554,683	-		HGI48_RS15790	0.73	+0.4
3,554,776	+		HGI48_RS15790	0.85	+0.4
3,554,801	-		HGI48_RS15790	0.88	+0.7
3,554,858	+				+0.9
3,554,868	-				+0.0
3,554,868	-				+1.3
3,554,880	+				+1.5
3,554,880	+				+1.3
3,554,880	+				+0.5
3,554,880	+				-1.8
3,554,880	+				-0.6
3,554,880	+				-0.2
3,554,880	+				-0.7
3,554,880	+				+2.1
3,554,881	-				-0.9
3,554,881	-				-0.8
3,554,881	-				-0.1
3,554,881	-				+0.5
3,554,881	-				+1.3
3,554,882	+				+0.5
3,554,882	+				+1.2
3,554,882	+				-0.2
3,554,882	+				-1.5
3,554,882	+				-0.7
3,554,882	+				-2.5
3,554,882	+				+0.6
3,554,882	+				-0.1
3,554,882	+				-0.2
3,554,883	-				-1.3
3,554,883	-				+0.2
3,554,883	-				-1.5
3,554,883	-				-2.8
3,554,883	-				+1.1
3,554,883	-				+0.3
3,554,883	-				-0.0
3,554,920	+				-0.2
3,554,920	+				-1.5
3,554,921	-				-0.7
3,554,921	-				-0.2
3,554,921	-				-0.8
3,554,922	+				+0.7
3,554,922	+				+0.0
3,554,923	-				-0.5
3,554,923	-				-0.3
3,554,982	+				-0.5
3,554,982	+				+0.6
3,554,992	+				+1.1
3,554,993	-				-1.2
3,554,998	-				+0.3
3,555,008	+				+0.2
3,555,087	+				-0.4
3,555,088	-				+2.3
3,555,088	-				-1.5
3,555,088	-				+1.2
3,555,108	+				+0.1
3,555,108	+				+0.6
3,555,108	+				-1.5
3,555,108	+				-0.3
3,555,108	+				-0.9
3,555,108	+				+0.7
3,555,108	+				-0.1
3,555,108	+				+0.2
3,555,108	+				+0.2
3,555,108	+				+0.9
3,555,108	+				-0.5
3,555,109	-				-0.1
3,555,109	-				-0.5
3,555,110	+				-0.0
3,555,110	+				-0.1
3,555,110	+				+0.5
3,555,130	+				+0.4
3,555,131	-				+0.5
3,555,131	-				-0.5
3,555,188	+				-1.1
3,555,189	-				+1.0
3,555,207	+				-0.5
3,555,208	-				+1.1
3,555,208	-				-0.2
3,555,208	-				+0.4
3,555,209	+				+0.5
3,555,209	+				-0.7
3,555,242	+				+0.8
3,555,243	-				+1.0
3,555,243	-				+1.5
3,555,282	-		HGI48_RS15795	0.15	-0.2
3,555,333	+				+0.5
3,555,334	-		HGI48_RS15795	0.35	-1.6
3,555,334	-		HGI48_RS15795	0.35	-0.4
3,555,334	-		HGI48_RS15795	0.35	+0.3
3,555,334	-		HGI48_RS15795	0.35	+0.0
3,555,350	-		HGI48_RS15795	0.41	-0.7
3,555,350	-		HGI48_RS15795	0.41	+0.7
3,555,375	+				-0.1
3,555,422	+		HGI48_RS15795	0.69	+0.5
3,555,501	+				+0.7
3,555,502	-				-1.4
3,555,562	+				-0.3
3,555,562	+				-2.1
3,555,563	-				-0.6
3,555,675	+		HGI48_RS15800	0.38	-0.4
3,555,676	-		HGI48_RS15800	0.38	+0.6
3,555,793	+		HGI48_RS15800	0.69	-0.9