Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15750

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,539,475	-		HGI48_RS15745	0.81	+1.2
3,539,475	-				+1.8
3,539,519	+		HGI48_RS15745	0.84	-0.7
3,539,519	+		HGI48_RS15745	0.84	+0.9
3,539,583	+		HGI48_RS15745	0.89	-0.2
3,539,583	+		HGI48_RS15745	0.89	-1.5
3,539,583	+		HGI48_RS15745	0.89	-1.5
3,539,583	+		HGI48_RS15745	0.89	-0.5
3,539,583	+		HGI48_RS15745	0.89	-1.3
3,539,584	-		HGI48_RS15745	0.89	+0.5
3,539,584	-		HGI48_RS15745	0.89	-0.5
3,539,590	-				+1.1
3,539,590	-		HGI48_RS15745	0.89	-0.1
3,539,633	+				-0.6
3,539,633	+				+0.9
3,539,665	+				-0.3
3,539,665	+				-0.5
3,539,666	-				+0.0
3,539,666	-				-0.2
3,539,685	+				+0.7
3,539,742	+				-0.2
3,539,772	+				+1.5
3,539,772	+				+1.5
3,539,773	-				-0.5
3,539,799	+				+0.3
3,539,800	-				+0.5
3,539,800	-				-1.8
3,539,925	-				+0.9
3,539,970	+				+0.5
3,539,970	+				-1.9
3,539,970	+				+0.2
3,539,970	+				+0.2
3,539,970	+				-0.8
3,539,970	+				+0.5
3,539,970	+				+0.5
3,539,971	-				-0.6
3,539,971	-				+0.4
3,539,971	-				-0.2
3,540,033	-				+0.3
3,540,049	+				+0.7
3,540,050	-				-0.2
3,540,050	-				+0.2
3,540,077	+				-2.1
3,540,078	-				-0.5
3,540,103	-				-0.8
3,540,103	-				-0.1
3,540,267	-				-0.6
3,540,267	-				+1.1
3,540,306	-				-0.1
3,540,383	+				-1.0
3,540,384	-				+0.7
3,540,386	+				-0.1
3,540,387	-				-1.1
3,540,388	+				+0.1
3,540,388	+				-1.2
3,540,389	-				-1.4
3,540,495	+				-0.9
3,540,495	+				+0.2
3,540,495	+				-0.5
3,540,495	+				-2.3
3,540,495	+				+1.1
3,540,496	-				-1.0
3,540,496	-				-1.8
3,540,496	-				-1.8
3,540,496	-				-0.5
3,540,496	-				-1.8
3,540,496	-				-1.5
3,540,674	+				-2.3
3,540,674	+				-1.4
3,540,687	-				-0.1
3,540,687	-				-0.1
3,540,798	+				-0.5
3,540,945	+		HGI48_RS15750	0.12	-0.8
3,540,945	+				+0.9
3,540,945	+		HGI48_RS15750	0.12	+0.2
3,540,945	+		HGI48_RS15750	0.12	-1.9
3,540,945	+		HGI48_RS15750	0.12	-0.5
3,540,945	+		HGI48_RS15750	0.12	-1.8
3,540,945	+		HGI48_RS15750	0.12	-2.6
3,540,945	+		HGI48_RS15750	0.12	-0.7
3,540,945	+		HGI48_RS15750	0.12	-2.1
3,540,945	+		HGI48_RS15750	0.12	-2.7
3,540,945	+		HGI48_RS15750	0.12	-1.5
3,540,945	+		HGI48_RS15750	0.12	-1.1
3,540,945	+		HGI48_RS15750	0.12	-0.6
3,540,945	+		HGI48_RS15750	0.12	+0.0
3,540,945	+		HGI48_RS15750	0.12	-2.1
3,540,945	+		HGI48_RS15750	0.12	-1.6
3,540,945	+		HGI48_RS15750	0.12	-1.5
3,540,946	-		HGI48_RS15750	0.12	-0.5
3,540,946	-		HGI48_RS15750	0.12	+0.3
3,540,946	-		HGI48_RS15750	0.12	-0.5
3,540,946	-		HGI48_RS15750	0.12	-1.6
3,540,946	-		HGI48_RS15750	0.12	-0.3
3,540,946	-		HGI48_RS15750	0.12	-2.1
3,540,949	+		HGI48_RS15750	0.13	-0.8
3,540,950	-		HGI48_RS15750	0.13	-0.7
3,541,064	+		HGI48_RS15750	0.15	-2.1
3,541,065	-		HGI48_RS15750	0.15	-1.5
3,541,137	+		HGI48_RS15750	0.17	+0.5
3,541,137	+		HGI48_RS15750	0.17	-0.7
3,541,138	-		HGI48_RS15750	0.17	-2.4
3,541,138	-		HGI48_RS15750	0.17	-1.1
3,541,138	-		HGI48_RS15750	0.17	-0.5
3,541,138	-		HGI48_RS15750	0.17	-2.5
3,541,138	-		HGI48_RS15750	0.17	-2.7
3,541,143	+		HGI48_RS15750	0.18	-0.5
3,541,143	+		HGI48_RS15750	0.18	-1.8
3,541,404	+		HGI48_RS15750	0.24	-1.6
3,541,430	+		HGI48_RS15750	0.25	-2.8
3,541,430	+				-1.1
3,541,491	-				+0.5
3,541,526	-		HGI48_RS15750	0.27	-1.8
3,541,526	-		HGI48_RS15750	0.27	-2.4
3,541,558	+		HGI48_RS15750	0.28	-2.7
3,541,559	-		HGI48_RS15750	0.28	-1.8
3,541,559	-		HGI48_RS15750	0.28	-1.5
3,541,618	-		HGI48_RS15750	0.30	+0.3
3,541,618	-		HGI48_RS15750	0.30	-2.5
3,541,618	-		HGI48_RS15750	0.30	-3.6
3,541,776	+		HGI48_RS15750	0.34	+0.5
3,541,777	-		HGI48_RS15750	0.34	+0.2
3,541,777	-		HGI48_RS15750	0.34	-0.9
3,541,794	+				-0.1
3,541,795	-		HGI48_RS15750	0.34	-1.8
3,541,914	+		HGI48_RS15750	0.37	-1.8
3,541,914	+		HGI48_RS15750	0.37	-2.1
3,541,915	-		HGI48_RS15750	0.37	-2.1
3,541,915	-		HGI48_RS15750	0.37	-0.2
3,541,915	-		HGI48_RS15750	0.37	-1.1
3,542,093	+		HGI48_RS15750	0.42	-2.6
3,542,093	+		HGI48_RS15750	0.42	-1.6
3,542,093	+		HGI48_RS15750	0.42	-1.5
3,542,093	+				-0.1
3,542,093	+		HGI48_RS15750	0.42	-1.1
3,542,093	+		HGI48_RS15750	0.42	-2.2
3,542,094	-		HGI48_RS15750	0.42	-1.5
3,542,094	-				+1.1
3,542,094	-		HGI48_RS15750	0.42	+0.5
3,542,094	-				-1.1
3,542,094	-		HGI48_RS15750	0.42	-1.5
3,542,235	+		HGI48_RS15750	0.46	-2.1
3,542,285	+		HGI48_RS15750	0.47	-0.2
3,542,285	+		HGI48_RS15750	0.47	-2.1
3,542,285	+		HGI48_RS15750	0.47	-2.7
3,542,285	+		HGI48_RS15750	0.47	-1.3
3,542,285	+		HGI48_RS15750	0.47	-1.0
3,542,285	+		HGI48_RS15750	0.47	-0.8
3,542,285	+		HGI48_RS15750	0.47	-2.5
3,542,285	+		HGI48_RS15750	0.47	-0.4
3,542,285	+		HGI48_RS15750	0.47	-2.8
3,542,286	-		HGI48_RS15750	0.47	-1.5
3,542,286	-		HGI48_RS15750	0.47	-0.5
3,542,286	-		HGI48_RS15750	0.47	-1.5
3,542,286	-		HGI48_RS15750	0.47	-0.1
3,542,286	-		HGI48_RS15750	0.47	-2.3
3,542,286	-		HGI48_RS15750	0.47	-2.1
3,542,286	-		HGI48_RS15750	0.47	-2.5
3,542,289	+		HGI48_RS15750	0.47	-2.1
3,542,289	+		HGI48_RS15750	0.47	+0.0
3,542,460	-		HGI48_RS15750	0.51	-1.4
3,542,499	+		HGI48_RS15750	0.52	-1.5
3,542,500	-		HGI48_RS15750	0.52	-2.6
3,542,542	+		HGI48_RS15750	0.54	-2.1
3,542,542	+		HGI48_RS15750	0.54	-1.1
3,542,543	-		HGI48_RS15750	0.54	-0.2
3,542,543	-		HGI48_RS15750	0.54	-1.3
3,542,543	-				-0.1
3,542,543	-		HGI48_RS15750	0.54	-0.7
3,542,543	-		HGI48_RS15750	0.54	-2.1
3,542,543	-		HGI48_RS15750	0.54	-2.3
3,542,702	+		HGI48_RS15750	0.58	-0.7
3,542,702	+		HGI48_RS15750	0.58	-1.5
3,542,702	+		HGI48_RS15750	0.58	-1.1
3,542,702	+		HGI48_RS15750	0.58	-1.8
3,542,702	+		HGI48_RS15750	0.58	-0.6
3,542,702	+		HGI48_RS15750	0.58	-0.7
3,542,703	-		HGI48_RS15750	0.58	-1.5
3,542,703	-		HGI48_RS15750	0.58	-0.2
3,542,703	-		HGI48_RS15750	0.58	-1.2
3,542,703	-		HGI48_RS15750	0.58	-2.6
3,542,767	-		HGI48_RS15750	0.59	-2.5
3,542,767	-		HGI48_RS15750	0.59	+1.4
3,542,805	+				-1.1
3,542,856	+		HGI48_RS15750	0.62	-1.5
3,542,856	+		HGI48_RS15750	0.62	-0.8
3,543,129	+		HGI48_RS15750	0.69	-2.3
3,543,179	+		HGI48_RS15750	0.70	-2.8
3,543,179	+		HGI48_RS15750	0.70	-1.8
3,543,179	+				-1.1
3,543,179	+		HGI48_RS15750	0.70	-1.1
3,543,179	+		HGI48_RS15750	0.70	-1.4
3,543,180	-		HGI48_RS15750	0.70	+0.3
3,543,180	-		HGI48_RS15750	0.70	-3.3
3,543,180	-		HGI48_RS15750	0.70	-2.3
3,543,180	-		HGI48_RS15750	0.70	+0.5
3,543,180	-		HGI48_RS15750	0.70	-1.5
3,543,180	-		HGI48_RS15750	0.70	-2.3
3,543,180	-				+1.1
3,543,180	-				-1.1
3,543,183	+		HGI48_RS15750	0.70	-1.8
3,543,258	+		HGI48_RS15750	0.72	-2.5
3,543,259	-		HGI48_RS15750	0.72	-0.5
3,543,318	+		HGI48_RS15750	0.73	-1.4
3,543,339	+		HGI48_RS15750	0.74	+0.2
3,543,339	+		HGI48_RS15750	0.74	+0.7
3,543,339	+		HGI48_RS15750	0.74	-2.1
3,543,339	+		HGI48_RS15750	0.74	-0.8
3,543,343	+		HGI48_RS15750	0.74	-0.7
3,543,489	+		HGI48_RS15750	0.78	-2.5
3,543,582	+				-1.1
3,543,582	+		HGI48_RS15750	0.80	-0.8
3,543,582	+		HGI48_RS15750	0.80	-0.8
3,543,582	+		HGI48_RS15750	0.80	-1.4
3,543,582	+		HGI48_RS15750	0.80	-1.5
3,543,583	-		HGI48_RS15750	0.80	-2.3
3,543,583	-		HGI48_RS15750	0.80	-0.8
3,543,583	-		HGI48_RS15750	0.80	-1.5
3,543,583	-		HGI48_RS15750	0.80	-1.3
3,543,583	-		HGI48_RS15750	0.80	-1.8
3,543,583	-		HGI48_RS15750	0.80	-1.5
3,543,584	+		HGI48_RS15750	0.80	-1.5
3,543,584	+				+0.5
3,543,584	+		HGI48_RS15750	0.80	-0.3
3,543,584	+		HGI48_RS15750	0.80	-0.5
3,543,584	+		HGI48_RS15750	0.80	+0.2
3,543,585	-		HGI48_RS15750	0.80	-0.2
3,543,585	-		HGI48_RS15750	0.80	-1.8
3,543,585	-		HGI48_RS15750	0.80	-2.3
3,543,585	-		HGI48_RS15750	0.80	-1.6
3,543,599	+		HGI48_RS15750	0.81	-1.1
3,543,599	+		HGI48_RS15750	0.81	-1.5
3,543,599	+		HGI48_RS15750	0.81	-0.9
3,543,599	+		HGI48_RS15750	0.81	-1.5
3,543,600	-				-0.1
3,543,600	-		HGI48_RS15750	0.81	+0.3
3,543,609	+				-1.1
3,543,621	+		HGI48_RS15750	0.81	-1.2
3,543,731	+		HGI48_RS15750	0.84	-2.3
3,543,731	+		HGI48_RS15750	0.84	-2.6
3,543,731	+		HGI48_RS15750	0.84	-2.8
3,543,731	+		HGI48_RS15750	0.84	-1.1
3,543,731	+		HGI48_RS15750	0.84	-1.1
3,543,731	+				-0.5
3,543,732	-		HGI48_RS15750	0.84	-0.5
3,543,732	-		HGI48_RS15750	0.84	-2.3
3,543,732	-		HGI48_RS15750	0.84	-2.7
3,543,732	-		HGI48_RS15750	0.84	-0.2
3,543,732	-		HGI48_RS15750	0.84	+2.2
3,543,732	-		HGI48_RS15750	0.84	-0.5
3,543,760	+		HGI48_RS15750	0.85	-3.7
3,543,761	-		HGI48_RS15750	0.85	-2.3
3,543,761	-		HGI48_RS15750	0.85	-1.2
3,543,761	-		HGI48_RS15750	0.85	-2.3
3,543,761	-		HGI48_RS15750	0.85	-0.2
3,543,769	-		HGI48_RS15750	0.85	+0.9
3,543,786	-		HGI48_RS15750	0.86	-1.1
3,543,786	-		HGI48_RS15750	0.86	+0.5
3,544,062	+				-0.5
3,544,063	-				-1.9
3,544,063	-				-1.1
3,544,169	+				-2.5
3,544,241	+				-1.5
3,544,241	+				-0.2
3,544,241	+				-2.3
3,544,241	+				-3.4
3,544,241	+				-2.8
3,544,241	+				-0.9
3,544,242	-				-0.9
3,544,250	+				-1.4
3,544,271	+				-1.9
3,544,271	+				-1.3
3,544,271	+				+0.4
3,544,272	-				-2.1
3,544,272	-				-0.2
3,544,272	-				-3.8
3,544,274	+				-0.5
3,544,274	+				-1.1
3,544,274	+				-2.8
3,544,274	+				-0.8
3,544,274	+				-4.3
3,544,274	+				-0.7
3,544,274	+				-2.5
3,544,274	+				-0.2
3,544,275	-				-0.1
3,544,299	+				-3.9
3,544,340	-				-0.5
3,544,352	+				-2.7
3,544,353	-				-0.8
3,544,419	+				-0.5
3,544,420	-				+0.3
3,544,420	-				-0.3
3,544,422	+				-2.6
3,544,423	-				+0.1
3,544,425	-				+0.3
3,544,425	-				+0.2
3,544,425	-				-0.2
3,544,431	+				-0.2
3,544,499	+				-1.5
3,544,508	+				-0.1
3,544,509	-				-0.2
3,544,512	-				-1.3
3,544,570	+				-0.8
3,544,645	+				-0.7
3,544,646	-				+0.5
3,544,790	-		HGI48_RS15755	0.11	+0.8
3,544,792	-				+0.5
3,544,852	+		HGI48_RS15755	0.16	-0.6
3,544,853	-		HGI48_RS15755	0.16	-0.1
3,544,997	-		HGI48_RS15755	0.26	-0.1
3,544,999	+				+1.7
3,545,134	+				+0.5
3,545,215	+		HGI48_RS15755	0.41	-2.5
3,545,216	-				+0.5
3,545,216	-		HGI48_RS15755	0.41	-0.4
3,545,256	+		HGI48_RS15755	0.43	-1.1
3,545,314	+		HGI48_RS15755	0.47	-0.4
3,545,315	-		HGI48_RS15755	0.47	+0.1
3,545,315	-		HGI48_RS15755	0.47	-0.2