Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14405

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,233,447	+				-0.0
3,233,497	-				+0.8
3,233,545	+				-0.6
3,233,546	-				+1.0
3,233,637	+				-0.3
3,233,638	-				-1.6
3,234,180	-				-2.4
3,234,434	-				-0.2
3,234,434	-				-2.6
3,234,434	-				-1.2
3,234,450	+				-2.2
3,234,459	+				-0.6
3,234,486	+				-1.6
3,234,486	+				-0.8
3,234,486	+				-0.8
3,234,486	+				-1.5
3,234,486	+				+1.2
3,234,487	-				-0.0
3,234,487	-				-1.2
3,234,487	-				-0.8
3,234,487	-				-1.6
3,234,487	-				+0.4
3,234,543	-		HGI48_RS14405	0.12	-2.8
3,234,596	+		HGI48_RS14405	0.15	-1.7
3,234,596	+		HGI48_RS14405	0.15	-2.2
3,234,596	+		HGI48_RS14405	0.15	-0.7
3,234,655	+		HGI48_RS14405	0.19	-1.8
3,234,666	+		HGI48_RS14405	0.20	-1.2
3,234,666	+		HGI48_RS14405	0.20	-1.7
3,234,667	-		HGI48_RS14405	0.20	-0.4
3,234,667	-		HGI48_RS14405	0.20	-0.7
3,234,667	-		HGI48_RS14405	0.20	-2.2
3,234,667	-		HGI48_RS14405	0.20	-1.6
3,234,667	-		HGI48_RS14405	0.20	-1.2
3,234,708	+		HGI48_RS14405	0.23	-0.6
3,234,743	+		HGI48_RS14405	0.25	-0.6
3,234,744	-		HGI48_RS14405	0.25	-1.4
3,234,744	-		HGI48_RS14405	0.25	-1.3
3,234,744	-		HGI48_RS14405	0.25	-1.9
3,234,877	+		HGI48_RS14405	0.34	-1.7
3,234,895	-		HGI48_RS14405	0.35	-2.2
3,234,895	-		HGI48_RS14405	0.35	-3.1
3,235,048	+				+0.4
3,235,065	+		HGI48_RS14405	0.46	-2.9
3,235,107	+		HGI48_RS14405	0.49	-0.6
3,235,107	+		HGI48_RS14405	0.49	-1.1
3,235,107	+		HGI48_RS14405	0.49	-0.4
3,235,107	+		HGI48_RS14405	0.49	-1.8
3,235,107	+		HGI48_RS14405	0.49	-1.0
3,235,108	-		HGI48_RS14405	0.49	-0.5
3,235,108	-		HGI48_RS14405	0.49	-1.6
3,235,114	-		HGI48_RS14405	0.49	-0.0
3,235,114	-		HGI48_RS14405	0.49	-0.6
3,235,188	+		HGI48_RS14405	0.54	-0.9
3,235,188	+		HGI48_RS14405	0.54	-1.2
3,235,188	+		HGI48_RS14405	0.54	-1.7
3,235,188	+		HGI48_RS14405	0.54	-3.1
3,235,188	+				+0.4
3,235,188	+		HGI48_RS14405	0.54	-1.9
3,235,188	+		HGI48_RS14405	0.54	-0.9
3,235,188	+		HGI48_RS14405	0.54	-0.9
3,235,188	+		HGI48_RS14405	0.54	-0.2
3,235,188	+		HGI48_RS14405	0.54	-1.4
3,235,188	+		HGI48_RS14405	0.54	-2.6
3,235,189	-		HGI48_RS14405	0.54	-1.6
3,235,189	-				+0.8
3,235,189	-				-0.2
3,235,189	-		HGI48_RS14405	0.54	+0.5
3,235,189	-		HGI48_RS14405	0.54	+0.1
3,235,189	-		HGI48_RS14405	0.54	-2.1
3,235,191	-		HGI48_RS14405	0.54	-1.3
3,235,191	-		HGI48_RS14405	0.54	-1.6
3,235,217	+		HGI48_RS14405	0.56	+0.1
3,235,217	+		HGI48_RS14405	0.56	-1.9
3,235,268	-		HGI48_RS14405	0.59	-1.9
3,235,268	-				+1.0
3,235,269	+		HGI48_RS14405	0.60	-1.9
3,235,269	+				-1.2
3,235,269	+		HGI48_RS14405	0.60	-0.0
3,235,270	-				-1.2
3,235,270	-		HGI48_RS14405	0.60	-1.7
3,235,270	-		HGI48_RS14405	0.60	-1.6
3,235,348	+		HGI48_RS14405	0.65	-1.4
3,235,348	+		HGI48_RS14405	0.65	-1.0
3,235,380	+		HGI48_RS14405	0.67	-1.9
3,235,380	+		HGI48_RS14405	0.67	-1.4
3,235,381	-		HGI48_RS14405	0.67	-1.3
3,235,381	-		HGI48_RS14405	0.67	-0.3
3,235,381	-		HGI48_RS14405	0.67	-2.6
3,235,381	-		HGI48_RS14405	0.67	-1.9
3,235,478	+		HGI48_RS14405	0.73	-2.2
3,235,478	+		HGI48_RS14405	0.73	-0.1
3,235,478	+		HGI48_RS14405	0.73	-2.2
3,235,478	+		HGI48_RS14405	0.73	-1.7
3,235,478	+		HGI48_RS14405	0.73	-1.6
3,235,478	+		HGI48_RS14405	0.73	-1.9
3,235,478	+		HGI48_RS14405	0.73	-1.2
3,235,479	-		HGI48_RS14405	0.73	-1.3
3,235,479	-				-1.2
3,235,479	-		HGI48_RS14405	0.73	-1.2
3,235,510	+		HGI48_RS14405	0.75	-2.9
3,235,510	+		HGI48_RS14405	0.75	-1.5
3,235,510	+		HGI48_RS14405	0.75	-1.7
3,235,574	-		HGI48_RS14405	0.80	+0.4
3,235,591	+				-0.6
3,235,592	-		HGI48_RS14405	0.81	+0.7
3,235,614	+		HGI48_RS14405	0.82	-0.4
3,235,615	-		HGI48_RS14405	0.82	-1.9
3,235,615	-		HGI48_RS14405	0.82	-2.5
3,235,645	+		HGI48_RS14405	0.84	-0.4
3,235,645	+		HGI48_RS14405	0.84	-0.3
3,235,646	-		HGI48_RS14405	0.84	-1.2
3,235,646	-		HGI48_RS14405	0.84	-2.0
3,235,646	-		HGI48_RS14405	0.84	-2.0
3,235,758	+				+1.4
3,235,758	+				-2.5
3,235,759	-				-1.8
3,235,771	+				+2.0
3,235,830	+				+1.2
3,235,914	+				+0.7
3,235,914	+				-1.8
3,235,914	+				-1.2
3,235,914	+				-2.8
3,235,914	+				-1.1
3,235,914	+				-0.7
3,235,914	+				-0.4
3,235,915	-				-1.9
3,235,915	-				-1.2
3,235,915	-				+0.7
3,235,972	+				-0.2
3,235,973	-		HGI48_RS14410	0.12	+0.4
3,235,973	-		HGI48_RS14410	0.12	-1.0
3,235,975	+		HGI48_RS14410	0.13	-1.9
3,235,975	+		HGI48_RS14410	0.13	-1.2
3,235,975	+		HGI48_RS14410	0.13	-1.3
3,235,976	-		HGI48_RS14410	0.13	-0.4
3,235,976	-		HGI48_RS14410	0.13	-0.4
3,235,976	-		HGI48_RS14410	0.13	-0.2
3,235,977	+		HGI48_RS14410	0.13	-1.3
3,235,977	+		HGI48_RS14410	0.13	-1.2
3,235,977	+		HGI48_RS14410	0.13	-1.4
3,235,978	-				+1.1
3,235,978	-		HGI48_RS14410	0.13	-0.4
3,235,978	-		HGI48_RS14410	0.13	+0.3
3,236,041	+				-1.2
3,236,041	+		HGI48_RS14410	0.26	-0.9
3,236,042	-		HGI48_RS14410	0.26	-0.6
3,236,160	+		HGI48_RS14410	0.50	-0.2
3,236,160	+		HGI48_RS14410	0.50	-2.2
3,236,160	+		HGI48_RS14410	0.50	-2.5
3,236,160	+		HGI48_RS14410	0.50	-0.9
3,236,161	-		HGI48_RS14410	0.50	-0.3
3,236,161	-		HGI48_RS14410	0.50	+0.4
3,236,161	-		HGI48_RS14410	0.50	+0.7
3,236,240	-				-0.2
3,236,271	+		HGI48_RS14410	0.73	-1.2
3,236,271	+		HGI48_RS14410	0.73	+0.4
3,236,271	+		HGI48_RS14410	0.73	-0.8
3,236,271	+		HGI48_RS14410	0.73	-2.9
3,236,271	+				+1.0
3,236,271	+		HGI48_RS14410	0.73	+0.8
3,236,271	+				-1.2
3,236,272	-		HGI48_RS14410	0.73	-0.2
3,236,272	-		HGI48_RS14410	0.73	-1.1
3,236,272	-				-0.2
3,236,272	-		HGI48_RS14410	0.73	-2.2
3,236,272	-		HGI48_RS14410	0.73	-0.1
3,236,272	-		HGI48_RS14410	0.73	-2.0
3,236,272	-		HGI48_RS14410	0.73	-1.3
3,236,272	-		HGI48_RS14410	0.73	-0.6
3,236,272	-		HGI48_RS14410	0.73	-0.4
3,236,274	+		HGI48_RS14410	0.73	-1.5
3,236,274	+				+0.4
3,236,274	+		HGI48_RS14410	0.73	+0.6
3,236,274	+		HGI48_RS14410	0.73	-0.8
3,236,275	-		HGI48_RS14410	0.74	-1.6
3,236,331	-		HGI48_RS14410	0.85	-0.8
3,236,331	-		HGI48_RS14410	0.85	+0.4
3,236,331	-		HGI48_RS14410	0.85	-0.9
3,236,331	-		HGI48_RS14410	0.85	-0.6
3,236,331	-		HGI48_RS14410	0.85	-0.5
3,236,331	-		HGI48_RS14410	0.85	+1.0
3,236,375	-				-0.3
3,236,375	-				-0.6
3,236,388	+				+0.8
3,236,388	+				-1.9
3,236,389	-				-0.5
3,236,409	+				-2.2
3,236,409	+				-0.0
3,236,409	+				-0.2
3,236,409	+				-1.6
3,236,409	+				-1.6
3,236,409	+				-0.5
3,236,410	-				+0.4
3,236,410	-				+0.4
3,236,467	+				+1.2
3,236,615	-				+1.4
3,236,615	-				-1.6
3,236,641	+				-2.2
3,236,654	+				-0.1
3,236,654	+				-0.2
3,236,654	+				+0.7
3,236,654	+				-1.6
3,236,654	+				+0.4
3,236,654	+				+1.2
3,236,654	+				+0.5
3,236,654	+				+0.2
3,236,654	+				-0.5
3,236,654	+				-0.8
3,236,654	+				+0.7
3,236,655	-				+0.0
3,236,655	-				-0.6
3,236,655	-				+0.1
3,236,655	-				-0.7
3,236,655	-				+0.2
3,236,686	+				-0.9
3,236,776	+		HGI48_RS14415	0.11	-0.4
3,236,777	-		HGI48_RS14415	0.11	-0.0
3,236,777	-		HGI48_RS14415	0.11	+0.1
3,236,781	-		HGI48_RS14415	0.12	-2.6
3,236,781	-		HGI48_RS14415	0.12	-1.8
3,236,819	+		HGI48_RS14415	0.16	+0.0
3,236,819	+				+0.4
3,236,819	+		HGI48_RS14415	0.16	-1.2
3,236,819	+				+1.0
3,236,820	-		HGI48_RS14415	0.16	-0.4
3,236,821	+		HGI48_RS14415	0.16	-0.4
3,236,822	-				+1.1