Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS14255 and HGI48_RS14260 are separated by 96 nucleotides HGI48_RS14260 and HGI48_RS14265 overlap by 4 nucleotides HGI48_RS14265 and HGI48_RS14270 overlap by 4 nucleotides HGI48_RS14270 and HGI48_RS14275 are separated by 10 nucleotides
HGI48_RS14255: HGI48_RS14255 - NADH-quinone oxidoreductase subunit M, at 3,200,798 to 3,202,333
_RS14255
HGI48_RS14260: HGI48_RS14260 - NADH-quinone oxidoreductase subunit L, at 3,202,430 to 3,204,280
_RS14260
HGI48_RS14265: HGI48_RS14265 - NADH-quinone oxidoreductase subunit NuoK, at 3,204,277 to 3,204,579
_RS14265
HGI48_RS14270: HGI48_RS14270 - NADH-quinone oxidoreductase subunit J, at 3,204,576 to 3,205,127
_RS14270
HGI48_RS14275: HGI48_RS14275 - NADH-quinone oxidoreductase subunit NuoI, at 3,205,138 to 3,205,680
_RS14275
Position (kb) 3202
3203
3204
3205 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3201.672 kb on + strand, within HGI48_RS14255 at 3202.432 kb on - strand at 3202.488 kb on + strand at 3203.142 kb on + strand, within HGI48_RS14260 at 3203.433 kb on - strand, within HGI48_RS14260 at 3203.796 kb on + strand, within HGI48_RS14260 at 3203.797 kb on - strand, within HGI48_RS14260 at 3203.817 kb on + strand, within HGI48_RS14260 at 3204.307 kb on - strand at 3204.395 kb on + strand, within HGI48_RS14265 at 3204.718 kb on + strand, within HGI48_RS14270 at 3204.719 kb on - strand, within HGI48_RS14270 at 3205.042 kb on - strand, within HGI48_RS14270
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 3,201,672 + HGI48_RS14255 0.57 -1.1 3,202,432 - -0.9 3,202,488 + -0.6 3,203,142 + HGI48_RS14260 0.38 -0.9 3,203,433 - HGI48_RS14260 0.54 -2.9 3,203,796 + HGI48_RS14260 0.74 -1.4 3,203,797 - HGI48_RS14260 0.74 -3.0 3,203,817 + HGI48_RS14260 0.75 -0.2 3,204,307 - -1.7 3,204,395 + HGI48_RS14265 0.39 +0.5 3,204,718 + HGI48_RS14270 0.26 -3.4 3,204,719 - HGI48_RS14270 0.26 -2.2 3,205,042 - HGI48_RS14270 0.84 -1.7
Or see this region's nucleotide sequence