Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13925

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,100,407	-				+1.9
3,100,407	-				+0.8
3,100,439	-				+0.0
3,100,439	-				-2.5
3,100,439	-				-0.4
3,100,457	+				+0.3
3,100,458	-				+1.3
3,100,458	-				+0.5
3,100,482	-				+1.4
3,100,482	-				+0.6
3,100,482	-				-1.2
3,100,482	-				-0.1
3,100,482	-				+0.9
3,100,482	-				-0.2
3,100,482	-				+1.1
3,100,482	-				+0.5
3,100,550	+				+0.8
3,100,550	+				+0.1
3,100,557	+				+1.2
3,100,590	+				+2.3
3,100,590	+				-0.2
3,100,590	+				-0.1
3,100,590	+				+1.8
3,100,590	+				-0.6
3,100,590	+				+0.1
3,100,590	+				+1.5
3,100,590	+				+0.7
3,100,590	+				+0.3
3,100,590	+				+2.0
3,100,591	-				+0.9
3,100,591	-				+1.2
3,100,591	-				+1.1
3,100,591	-				+0.3
3,100,633	+		HGI48_RS13920	0.11	+2.3
3,100,634	-		HGI48_RS13920	0.12	-2.0
3,100,636	+		HGI48_RS13920	0.12	-0.1
3,100,636	+		HGI48_RS13920	0.12	+1.4
3,100,637	-		HGI48_RS13920	0.12	-0.4
3,100,637	-		HGI48_RS13920	0.12	+0.7
3,100,637	-		HGI48_RS13920	0.12	+1.5
3,100,692	+		HGI48_RS13920	0.18	+0.8
3,100,692	+		HGI48_RS13920	0.18	+0.3
3,100,693	-		HGI48_RS13920	0.18	+1.9
3,100,702	-		HGI48_RS13920	0.19	+0.7
3,100,702	-		HGI48_RS13920	0.19	+1.5
3,100,717	+		HGI48_RS13920	0.21	-0.9
3,100,718	-		HGI48_RS13920	0.21	+0.6
3,100,725	+		HGI48_RS13920	0.22	-0.1
3,100,726	-				+1.3
3,100,726	-		HGI48_RS13920	0.22	+1.7
3,100,726	-		HGI48_RS13920	0.22	+2.5
3,100,728	+		HGI48_RS13920	0.22	-0.7
3,100,729	-		HGI48_RS13920	0.22	-1.7
3,100,729	-		HGI48_RS13920	0.22	+1.7
3,100,729	-		HGI48_RS13920	0.22	+0.9
3,100,729	-		HGI48_RS13920	0.22	+0.5
3,100,760	-		HGI48_RS13920	0.26	+0.9
3,100,760	-		HGI48_RS13920	0.26	-0.4
3,100,760	-		HGI48_RS13920	0.26	+0.7
3,100,760	-		HGI48_RS13920	0.26	+2.3
3,100,760	-		HGI48_RS13920	0.26	+1.5
3,100,760	-		HGI48_RS13920	0.26	+0.5
3,100,760	-		HGI48_RS13920	0.26	+1.2
3,100,877	+		HGI48_RS13920	0.39	+0.8
3,100,877	+		HGI48_RS13920	0.39	-1.5
3,100,878	-		HGI48_RS13920	0.39	+1.6
3,100,879	+		HGI48_RS13920	0.39	+2.1
3,100,879	+		HGI48_RS13920	0.39	+1.9
3,100,879	+		HGI48_RS13920	0.39	+1.1
3,100,879	+		HGI48_RS13920	0.39	+1.4
3,100,879	+		HGI48_RS13920	0.39	-0.7
3,100,880	-		HGI48_RS13920	0.40	-0.4
3,100,880	-		HGI48_RS13920	0.40	+0.9
3,100,882	+		HGI48_RS13920	0.40	+0.3
3,100,903	+		HGI48_RS13920	0.42	+0.1
3,100,916	+		HGI48_RS13920	0.44	-2.5
3,100,946	-				+0.3
3,100,958	+		HGI48_RS13920	0.48	-0.5
3,100,958	+		HGI48_RS13920	0.48	+1.3
3,101,059	+		HGI48_RS13920	0.60	+0.3
3,101,060	-		HGI48_RS13920	0.60	+1.8
3,101,086	+		HGI48_RS13920	0.63	+0.9
3,101,086	+				+3.3
3,101,108	-		HGI48_RS13920	0.66	+1.9
3,101,108	-		HGI48_RS13920	0.66	+0.8
3,101,144	-		HGI48_RS13920	0.70	+1.0
3,101,154	-		HGI48_RS13920	0.71	+0.0
3,101,275	+		HGI48_RS13920	0.85	+0.8
3,101,275	+		HGI48_RS13920	0.85	+1.9
3,101,275	+		HGI48_RS13920	0.85	-0.9
3,101,275	+		HGI48_RS13920	0.85	+1.8
3,101,276	-		HGI48_RS13920	0.85	+0.1
3,101,312	-		HGI48_RS13920	0.89	+0.1
3,101,312	-				-0.2
3,101,322	+		HGI48_RS13920	0.90	+0.3
3,101,322	+		HGI48_RS13920	0.90	+0.9
3,101,322	+		HGI48_RS13920	0.90	+1.6
3,101,323	-				+0.9
3,101,323	-				+0.9
3,101,323	-				-0.5
3,101,367	+				+0.3
3,101,368	-				-1.7
3,101,368	-				-0.3
3,101,368	-				+1.2
3,101,377	+				-0.8
3,101,377	+				+0.8
3,101,378	-				-0.7
3,101,378	-				+3.5
3,101,378	-				+0.9
3,101,378	-				+1.1
3,101,378	-				+1.3
3,101,385	+				+1.3
3,101,385	+				+1.1
3,101,386	-				+1.5
3,101,386	-				+0.9
3,101,465	+				+3.2
3,101,466	-				+0.6
3,101,484	+		HGI48_RS13925	0.12	+2.0
3,101,484	+		HGI48_RS13925	0.12	-0.7
3,101,484	+		HGI48_RS13925	0.12	+1.6
3,101,494	-		HGI48_RS13925	0.14	+0.8
3,101,507	-		HGI48_RS13925	0.16	+1.6
3,101,571	+		HGI48_RS13925	0.26	+0.1
3,101,571	+		HGI48_RS13925	0.26	-0.3
3,101,575	+		HGI48_RS13925	0.26	+1.1
3,101,575	+		HGI48_RS13925	0.26	+0.1
3,101,575	+		HGI48_RS13925	0.26	-1.0
3,101,575	+		HGI48_RS13925	0.26	+0.7
3,101,575	+		HGI48_RS13925	0.26	+0.5
3,101,576	-		HGI48_RS13925	0.27	+0.1
3,101,576	-		HGI48_RS13925	0.27	-0.5
3,101,576	-		HGI48_RS13925	0.27	+0.2
3,101,576	-		HGI48_RS13925	0.27	-0.8
3,101,576	-		HGI48_RS13925	0.27	+0.8
3,101,576	-		HGI48_RS13925	0.27	+1.6
3,101,576	-		HGI48_RS13925	0.27	+0.3
3,101,578	-		HGI48_RS13925	0.27	+0.3
3,101,578	-		HGI48_RS13925	0.27	-0.2
3,101,654	+				-0.2
3,101,683	+		HGI48_RS13925	0.43	+1.0
3,101,686	+		HGI48_RS13925	0.44	+0.0
3,101,686	+		HGI48_RS13925	0.44	+0.3
3,101,690	+				+1.7
3,101,690	+				+0.3
3,101,690	+		HGI48_RS13925	0.44	-0.7
3,101,690	+		HGI48_RS13925	0.44	-2.7
3,101,691	-		HGI48_RS13925	0.45	-0.4
3,101,691	-		HGI48_RS13925	0.45	+0.6
3,101,691	-		HGI48_RS13925	0.45	+0.3
3,101,734	+		HGI48_RS13925	0.51	-0.7
3,101,735	-		HGI48_RS13925	0.52	+2.1
3,101,735	-		HGI48_RS13925	0.52	+2.3
3,101,735	-				+1.7
3,101,755	-				-0.2
3,101,802	+				+0.9
3,101,802	+				+0.3
3,101,802	+		HGI48_RS13925	0.62	+1.5
3,101,802	+		HGI48_RS13925	0.62	-0.1
3,101,802	+		HGI48_RS13925	0.62	-1.7
3,101,802	+		HGI48_RS13925	0.62	+1.3
3,101,803	-		HGI48_RS13925	0.62	+1.7
3,101,803	-		HGI48_RS13925	0.62	-0.1
3,101,803	-		HGI48_RS13925	0.62	+0.9
3,101,805	+		HGI48_RS13925	0.63	+0.1
3,101,806	-		HGI48_RS13925	0.63	-0.8
3,101,806	-		HGI48_RS13925	0.63	+1.5
3,101,895	+		HGI48_RS13925	0.77	+0.5
3,101,896	-		HGI48_RS13925	0.77	+0.9
3,101,896	-		HGI48_RS13925	0.77	+1.3
3,101,896	-				+1.1
3,101,916	+				+0.3
3,101,943	+		HGI48_RS13925	0.84	+0.3
3,101,943	+		HGI48_RS13925	0.84	+0.7
3,101,944	-		HGI48_RS13925	0.84	-0.4
3,101,944	-		HGI48_RS13925	0.84	-1.7
3,101,950	-				+1.6
3,101,971	+		HGI48_RS13925	0.89	+2.0
3,101,971	+		HGI48_RS13925	0.89	-0.9
3,101,972	-		HGI48_RS13925	0.89	+1.3
3,101,972	-		HGI48_RS13925	0.89	+0.7
3,101,986	-				+1.3
3,101,986	-				-1.2
3,102,026	+				-0.5
3,102,027	-				+1.6
3,102,027	-				+0.2
3,102,041	-				-0.7
3,102,060	+				+0.3
3,102,061	-				+0.3
3,102,061	-				-1.5
3,102,061	-				-1.1
3,102,063	+				+0.1
3,102,064	-				-1.0
3,102,105	+				+0.3
3,102,106	-				-0.1
3,102,156	+				+0.2
3,102,156	+				+1.8
3,102,156	+				+0.3
3,102,161	+				+0.5
3,102,162	-				+0.6
3,102,237	-				+1.6
3,102,237	-				-0.2
3,102,291	+				+0.8
3,102,291	+				+0.0
3,102,292	-				-1.8
3,102,292	-				-0.7
3,102,341	+				+0.3
3,102,381	+				-0.1
3,102,381	+				-1.1
3,102,381	+				+1.2
3,102,381	+				+1.2
3,102,381	+				+1.0
3,102,381	+				+0.1
3,102,381	+				-1.2
3,102,382	-				-0.1
3,102,382	-				-0.7
3,102,382	-				+0.7
3,102,382	-				-0.7
3,102,473	+		HGI48_RS13930	0.11	-1.7
3,102,544	-		HGI48_RS13930	0.13	-0.1
3,102,596	+				-0.7
3,102,596	+		HGI48_RS13930	0.14	+1.1
3,102,640	+		HGI48_RS13930	0.15	+0.4
3,102,690	+		HGI48_RS13930	0.17	-1.3
3,102,690	+		HGI48_RS13930	0.17	+0.2
3,102,690	+		HGI48_RS13930	0.17	-0.9
3,102,691	-		HGI48_RS13930	0.17	-0.1
3,102,753	-				-1.2
3,102,858	+		HGI48_RS13930	0.22	+1.3
3,102,859	-				+1.3
3,102,965	-		HGI48_RS13930	0.24	-2.2
3,103,031	+		HGI48_RS13930	0.26	-1.0
3,103,031	+		HGI48_RS13930	0.26	-0.7