Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13905

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,097,393	+				-0.5
3,097,394	-				-0.6
3,097,394	-				-0.7
3,097,395	+				-1.7
3,097,395	+				-0.1
3,097,395	+				-2.0
3,097,395	+				-2.2
3,097,396	-				+2.3
3,097,396	-				-0.4
3,097,396	-				-0.7
3,097,396	-				+1.2
3,097,408	-				-0.5
3,097,408	-				+0.2
3,097,455	+				+0.7
3,097,455	+				-1.0
3,097,457	+				-0.4
3,097,457	+				-0.5
3,097,457	+				-2.5
3,097,457	+				-0.6
3,097,457	+				-1.2
3,097,458	-				-1.0
3,097,458	-				+0.3
3,097,462	+				+0.8
3,097,463	-				+0.8
3,097,463	-				-1.0
3,097,467	-				+0.0
3,097,471	+				+1.1
3,097,472	-				-1.5
3,097,550	-		HGI48_RS13900	0.51	-0.7
3,097,713	+				-0.1
3,097,857	+				+0.0
3,097,858	-				+0.7
3,097,897	+				-0.7
3,097,899	+				+0.8
3,097,994	+				+0.9
3,097,995	-				+0.7
3,098,000	-				-0.0
3,098,002	+				+1.3
3,098,003	-				-2.0
3,098,040	+				+0.9
3,098,054	+				+0.9
3,098,057	-				+1.0
3,098,058	+				-0.7
3,098,059	-				+0.3
3,098,071	-				+2.5
3,098,092	-				+1.6
3,098,092	-				+1.6
3,098,092	-				+1.0
3,098,123	-				+1.6
3,098,183	-				-0.5
3,098,183	-				-1.0
3,098,187	-				-1.0
3,098,237	+				+0.2
3,098,270	+				-0.9
3,098,278	-				+0.9
3,098,282	-				+0.7
3,098,295	-				+1.5
3,098,310	-				+0.2
3,098,313	+				+1.7
3,098,313	+				+0.5
3,098,314	-				-0.2
3,098,314	-				+0.9
3,098,314	-				+1.2
3,098,351	-				+1.5
3,098,397	+		HGI48_RS13905	0.17	+0.8
3,098,397	+		HGI48_RS13905	0.17	-0.2
3,098,398	-		HGI48_RS13905	0.17	+1.0
3,098,398	-		HGI48_RS13905	0.17	-0.4
3,098,398	-		HGI48_RS13905	0.17	-1.0
3,098,398	-		HGI48_RS13905	0.17	+1.5
3,098,398	-		HGI48_RS13905	0.17	+0.3
3,098,404	+		HGI48_RS13905	0.18	+1.6
3,098,404	+		HGI48_RS13905	0.18	-0.2
3,098,404	+		HGI48_RS13905	0.18	-2.0
3,098,405	-		HGI48_RS13905	0.19	+0.5
3,098,405	-		HGI48_RS13905	0.19	+1.4
3,098,405	-		HGI48_RS13905	0.19	+1.1
3,098,408	+		HGI48_RS13905	0.19	-0.2
3,098,408	+		HGI48_RS13905	0.19	+0.6
3,098,409	-		HGI48_RS13905	0.20	+0.8
3,098,409	-		HGI48_RS13905	0.20	+0.6
3,098,450	+		HGI48_RS13905	0.30	+0.8
3,098,450	+		HGI48_RS13905	0.30	+0.3
3,098,451	-		HGI48_RS13905	0.30	+0.0
3,098,451	-		HGI48_RS13905	0.30	-1.1
3,098,451	-		HGI48_RS13905	0.30	+0.6
3,098,451	-		HGI48_RS13905	0.30	+1.9
3,098,451	-				+3.3
3,098,451	-				-0.7
3,098,451	-		HGI48_RS13905	0.30	+0.9
3,098,451	-		HGI48_RS13905	0.30	+1.9
3,098,451	-		HGI48_RS13905	0.30	-0.4
3,098,451	-		HGI48_RS13905	0.30	-2.2
3,098,451	-		HGI48_RS13905	0.30	+2.2
3,098,451	-				+1.6
3,098,478	+		HGI48_RS13905	0.36	+0.4
3,098,499	-		HGI48_RS13905	0.42	+1.8
3,098,504	-		HGI48_RS13905	0.43	+0.5
3,098,555	+		HGI48_RS13905	0.55	-1.7
3,098,556	-		HGI48_RS13905	0.55	-0.7
3,098,556	-		HGI48_RS13905	0.55	-0.1
3,098,642	+		HGI48_RS13905	0.76	-0.2
3,098,642	+		HGI48_RS13905	0.76	+0.8
3,098,643	-		HGI48_RS13905	0.77	+0.6
3,098,643	-		HGI48_RS13905	0.77	+0.8
3,098,643	-		HGI48_RS13905	0.77	+0.9
3,098,643	-		HGI48_RS13905	0.77	+1.7
3,098,643	-		HGI48_RS13905	0.77	-0.5
3,098,687	+		HGI48_RS13905	0.87	-1.2
3,098,688	-		HGI48_RS13905	0.88	+0.5
3,098,688	-		HGI48_RS13905	0.88	+0.8
3,098,688	-		HGI48_RS13905	0.88	+0.9
3,098,798	+				+1.6
3,098,799	-				-0.2
3,098,799	-				+0.1
3,098,799	-				+0.2
3,098,824	-				+1.2
3,098,827	+				-2.2
3,098,827	+				+1.4
3,098,827	+				+0.1
3,098,827	+				+0.6
3,098,827	+				+0.3
3,098,827	+				+0.6
3,098,828	-				+0.9
3,098,828	-				+1.3
3,098,828	-				+0.6
3,098,828	-				+1.8
3,098,870	+		HGI48_RS13910	0.18	+0.4
3,098,870	+		HGI48_RS13910	0.18	+0.7
3,098,870	+		HGI48_RS13910	0.18	-0.2
3,098,871	-		HGI48_RS13910	0.18	+0.7
3,098,887	-		HGI48_RS13910	0.22	+1.8
3,098,887	-		HGI48_RS13910	0.22	+1.2
3,098,902	-				+1.1
3,098,902	-		HGI48_RS13910	0.26	+0.6
3,098,927	+		HGI48_RS13910	0.32	+0.5
3,098,927	+		HGI48_RS13910	0.32	-2.7
3,098,931	+		HGI48_RS13910	0.33	+0.1
3,098,931	+		HGI48_RS13910	0.33	-0.7
3,098,931	+		HGI48_RS13910	0.33	-2.2
3,098,931	+		HGI48_RS13910	0.33	+1.2
3,098,931	+		HGI48_RS13910	0.33	+0.7
3,098,932	-		HGI48_RS13910	0.33	+0.8
3,098,932	-		HGI48_RS13910	0.33	+0.3
3,098,932	-		HGI48_RS13910	0.33	+0.9
3,098,932	-		HGI48_RS13910	0.33	-1.7
3,098,932	-		HGI48_RS13910	0.33	+1.7
3,098,932	-		HGI48_RS13910	0.33	+0.2
3,098,932	-		HGI48_RS13910	0.33	-0.4
3,098,932	-		HGI48_RS13910	0.33	+0.9
3,098,948	+		HGI48_RS13910	0.37	+0.3
3,098,948	+		HGI48_RS13910	0.37	-0.1
3,098,971	+		HGI48_RS13910	0.43	+1.2
3,098,972	-		HGI48_RS13910	0.43	+2.2
3,098,972	-		HGI48_RS13910	0.43	-0.6
3,098,972	-		HGI48_RS13910	0.43	-1.1
3,098,972	-		HGI48_RS13910	0.43	-0.2
3,098,972	-		HGI48_RS13910	0.43	+1.5
3,099,169	+				+2.0
3,099,169	+				+0.3
3,099,169	+				+0.9
3,099,169	+				+0.5
3,099,169	+				+1.1
3,099,169	+				+1.7
3,099,169	+				-1.0
3,099,170	-				+0.9
3,099,224	+				+1.2
3,099,224	+				-1.0
3,099,224	+				+1.3
3,099,224	+				+2.3
3,099,224	+				-0.5
3,099,225	-				+0.9
3,099,238	+				+0.3
3,099,238	+				+1.1
3,099,238	+				-0.5
3,099,238	+				+1.3
3,099,239	-				+1.5
3,099,239	-				+1.1
3,099,330	-				+1.9
3,099,331	+				+0.8
3,099,331	+				+0.1
3,099,331	+				+1.1
3,099,332	-				+1.6
3,099,332	-				+2.2
3,099,350	+				+1.9
3,099,350	+		HGI48_RS13915	0.11	-1.2
3,099,350	+		HGI48_RS13915	0.11	-0.5
3,099,350	+		HGI48_RS13915	0.11	+1.8
3,099,350	+		HGI48_RS13915	0.11	+1.2
3,099,350	+		HGI48_RS13915	0.11	+0.9
3,099,350	+		HGI48_RS13915	0.11	+1.0
3,099,350	+		HGI48_RS13915	0.11	+1.1
3,099,350	+		HGI48_RS13915	0.11	+0.6
3,099,350	+		HGI48_RS13915	0.11	+0.8
3,099,350	+		HGI48_RS13915	0.11	+1.0
3,099,350	+		HGI48_RS13915	0.11	+2.0
3,099,350	+		HGI48_RS13915	0.11	+0.1
3,099,350	+		HGI48_RS13915	0.11	+0.6
3,099,350	+		HGI48_RS13915	0.11	+2.3
3,099,350	+		HGI48_RS13915	0.11	+0.3
3,099,351	-		HGI48_RS13915	0.11	+0.9
3,099,351	-		HGI48_RS13915	0.11	+2.2
3,099,351	-		HGI48_RS13915	0.11	-0.5
3,099,351	-		HGI48_RS13915	0.11	-0.7
3,099,449	+		HGI48_RS13915	0.18	+0.0
3,099,500	+		HGI48_RS13915	0.22	-0.5
3,099,500	+		HGI48_RS13915	0.22	+0.0
3,099,501	-		HGI48_RS13915	0.22	+2.1
3,099,511	+		HGI48_RS13915	0.23	-2.0
3,099,631	-		HGI48_RS13915	0.32	-0.9
3,099,631	-		HGI48_RS13915	0.32	-0.2
3,099,683	+		HGI48_RS13915	0.36	+0.1
3,099,683	+		HGI48_RS13915	0.36	+1.9
3,099,683	+				+1.9
3,099,683	+		HGI48_RS13915	0.36	+0.7
3,099,684	-		HGI48_RS13915	0.36	+0.1
3,099,684	-		HGI48_RS13915	0.36	-0.3
3,099,684	-		HGI48_RS13915	0.36	-1.1
3,099,684	-		HGI48_RS13915	0.36	+0.9
3,099,689	+		HGI48_RS13915	0.36	-0.1
3,099,689	+				+1.1
3,099,689	+		HGI48_RS13915	0.36	+1.3
3,099,689	+		HGI48_RS13915	0.36	+0.2
3,099,690	-		HGI48_RS13915	0.37	+1.2
3,099,690	-		HGI48_RS13915	0.37	+0.8
3,099,713	+		HGI48_RS13915	0.38	+1.3
3,099,714	-				+3.3
3,099,714	-		HGI48_RS13915	0.38	-1.2