Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13610

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,977,083	+		HGI48_RS13600	0.72	+1.1
2,977,083	+		HGI48_RS13600	0.72	+1.8
2,977,084	-		HGI48_RS13600	0.72	-2.3
2,977,086	+		HGI48_RS13600	0.73	-1.5
2,977,087	-		HGI48_RS13600	0.73	+1.4
2,977,105	+		HGI48_RS13600	0.75	-0.1
2,977,105	+		HGI48_RS13600	0.75	+1.8
2,977,105	+		HGI48_RS13600	0.75	+1.8
2,977,105	+		HGI48_RS13600	0.75	-0.1
2,977,105	+		HGI48_RS13600	0.75	+1.8
2,977,105	+		HGI48_RS13600	0.75	+1.5
2,977,105	+		HGI48_RS13600	0.75	+0.7
2,977,105	+		HGI48_RS13600	0.75	-0.1
2,977,105	+				+1.1
2,977,105	+		HGI48_RS13600	0.75	+0.3
2,977,106	-		HGI48_RS13600	0.75	+0.1
2,977,106	-		HGI48_RS13600	0.75	-0.7
2,977,106	-		HGI48_RS13600	0.75	+3.0
2,977,106	-		HGI48_RS13600	0.75	+1.3
2,977,107	+		HGI48_RS13600	0.75	-0.9
2,977,108	-		HGI48_RS13600	0.75	+0.3
2,977,108	-		HGI48_RS13600	0.75	+2.2
2,977,185	-		HGI48_RS13600	0.84	+1.4
2,977,193	+		HGI48_RS13600	0.85	+1.7
2,977,193	+		HGI48_RS13600	0.85	+1.2
2,977,193	+		HGI48_RS13600	0.85	+1.4
2,977,193	+		HGI48_RS13600	0.85	+2.2
2,977,193	+		HGI48_RS13600	0.85	+1.6
2,977,193	+		HGI48_RS13600	0.85	+1.8
2,977,193	+		HGI48_RS13600	0.85	+0.7
2,977,194	-		HGI48_RS13600	0.85	+0.3
2,977,194	-		HGI48_RS13600	0.85	+1.9
2,977,243	+				+1.6
2,977,243	+				+0.8
2,977,243	+				+1.5
2,977,243	+				-0.6
2,977,244	-				+0.5
2,977,287	+				+0.2
2,977,287	+				+3.8
2,977,287	+				+0.7
2,977,287	+				+1.7
2,977,287	+				-1.7
2,977,288	-				-0.2
2,977,288	-				+1.4
2,977,296	+				+0.5
2,977,296	+				+2.2
2,977,297	-				+1.8
2,977,318	-				+1.7
2,977,318	-				+1.8
2,977,319	+				+2.1
2,977,341	+				+2.0
2,977,341	+				+1.2
2,977,341	+				+1.1
2,977,341	+				+1.6
2,977,342	-				-0.3
2,977,342	-				+0.7
2,977,342	-				+2.1
2,977,342	-				+1.3
2,977,342	-				-0.4
2,977,342	-				+1.7
2,977,345	+				+1.9
2,977,369	+				+0.2
2,977,371	+				+1.6
2,977,371	+				+1.2
2,977,395	-				-0.0
2,977,476	+				+1.7
2,977,501	+				+0.9
2,977,501	+				-0.3
2,977,541	-				-1.3
2,977,564	+		HGI48_RS13605	0.18	+1.0
2,977,581	+		HGI48_RS13605	0.21	+1.1
2,977,581	+		HGI48_RS13605	0.21	+0.5
2,977,582	-		HGI48_RS13605	0.21	+1.5
2,977,606	-		HGI48_RS13605	0.25	+1.4
2,977,608	+		HGI48_RS13605	0.25	+0.3
2,977,608	+		HGI48_RS13605	0.25	+0.9
2,977,608	+		HGI48_RS13605	0.25	+0.9
2,977,608	+		HGI48_RS13605	0.25	-0.5
2,977,608	+		HGI48_RS13605	0.25	+0.8
2,977,608	+		HGI48_RS13605	0.25	+1.7
2,977,608	+		HGI48_RS13605	0.25	+0.6
2,977,608	+		HGI48_RS13605	0.25	+1.1
2,977,609	-		HGI48_RS13605	0.25	+0.6
2,977,609	-		HGI48_RS13605	0.25	+0.8
2,977,609	-		HGI48_RS13605	0.25	-1.0
2,977,609	-		HGI48_RS13605	0.25	+1.7
2,977,629	+				+3.3
2,977,629	+		HGI48_RS13605	0.29	+1.2
2,977,629	+		HGI48_RS13605	0.29	+0.5
2,977,629	+		HGI48_RS13605	0.29	+2.2
2,977,629	+				+3.7
2,977,630	-		HGI48_RS13605	0.29	-0.9
2,977,630	-		HGI48_RS13605	0.29	+1.4
2,977,630	-		HGI48_RS13605	0.29	+1.6
2,977,630	-		HGI48_RS13605	0.29	+2.5
2,977,630	-		HGI48_RS13605	0.29	+1.4
2,977,645	+		HGI48_RS13605	0.32	+2.0
2,977,645	+		HGI48_RS13605	0.32	-2.7
2,977,645	+		HGI48_RS13605	0.32	+1.5
2,977,646	-		HGI48_RS13605	0.32	+1.8
2,977,646	-		HGI48_RS13605	0.32	+1.2
2,977,646	-		HGI48_RS13605	0.32	+1.3
2,977,646	-		HGI48_RS13605	0.32	+1.1
2,977,646	-		HGI48_RS13605	0.32	+0.3
2,977,646	-		HGI48_RS13605	0.32	+1.4
2,977,646	-		HGI48_RS13605	0.32	+0.8
2,977,646	-		HGI48_RS13605	0.32	-0.2
2,977,650	+		HGI48_RS13605	0.32	+1.6
2,977,737	-		HGI48_RS13605	0.47	+1.2
2,977,737	-		HGI48_RS13605	0.47	+1.6
2,977,757	-		HGI48_RS13605	0.51	+2.9
2,977,803	-		HGI48_RS13605	0.59	+2.7
2,977,811	+		HGI48_RS13605	0.60	+1.7
2,977,811	+				+1.9
2,977,811	+		HGI48_RS13605	0.60	+1.5
2,977,812	-		HGI48_RS13605	0.60	+1.2
2,977,812	-		HGI48_RS13605	0.60	-0.7
2,977,812	-		HGI48_RS13605	0.60	+1.3
2,977,812	-		HGI48_RS13605	0.60	+2.3
2,977,812	-		HGI48_RS13605	0.60	-0.0
2,977,830	+		HGI48_RS13605	0.64	+2.4
2,977,861	-		HGI48_RS13605	0.69	+1.4
2,977,893	+		HGI48_RS13605	0.74	+1.3
2,977,894	-		HGI48_RS13605	0.75	+1.6
2,977,894	-		HGI48_RS13605	0.75	+3.0
2,977,900	+		HGI48_RS13605	0.76	+1.8
2,977,901	-		HGI48_RS13605	0.76	+1.7
2,977,901	-		HGI48_RS13605	0.76	+1.3
2,977,908	+		HGI48_RS13605	0.77	+1.8
2,977,908	+		HGI48_RS13605	0.77	+1.6
2,977,909	-				+2.4
2,977,909	-		HGI48_RS13605	0.77	+1.9
2,977,910	+		HGI48_RS13605	0.77	+2.1
2,977,910	+		HGI48_RS13605	0.77	+3.3
2,977,936	+		HGI48_RS13605	0.82	-0.2
2,977,937	-		HGI48_RS13605	0.82	+1.6
2,977,937	-		HGI48_RS13605	0.82	+1.3
2,977,963	+		HGI48_RS13605	0.87	+1.7
2,977,964	-		HGI48_RS13605	0.87	+1.3
2,978,010	+				+1.3
2,978,010	+				+1.3
2,978,010	+				+0.2
2,978,010	+				+1.5
2,978,011	-				-0.2
2,978,011	-				+1.4
2,978,011	-				+0.2
2,978,025	+				+1.1
2,978,026	-				+1.1
2,978,026	-				+1.6
2,978,044	+				-0.1
2,978,045	-				+1.9
2,978,045	-				+0.7
2,978,045	-				+2.7
2,978,057	+				+2.6
2,978,091	+				+1.9
2,978,091	+		HGI48_RS13610	0.14	+0.7
2,978,092	-		HGI48_RS13610	0.14	+2.6
2,978,094	+		HGI48_RS13610	0.15	+1.0
2,978,094	+		HGI48_RS13610	0.15	+1.5
2,978,094	+		HGI48_RS13610	0.15	+1.1
2,978,095	-		HGI48_RS13610	0.15	+0.4
2,978,095	-		HGI48_RS13610	0.15	+0.3
2,978,120	+		HGI48_RS13610	0.22	+0.9
2,978,161	-		HGI48_RS13610	0.34	+1.9
2,978,163	+		HGI48_RS13610	0.34	+0.3
2,978,163	+		HGI48_RS13610	0.34	+1.4
2,978,163	+		HGI48_RS13610	0.34	-0.5
2,978,163	+		HGI48_RS13610	0.34	+1.0
2,978,163	+		HGI48_RS13610	0.34	+1.5
2,978,164	-		HGI48_RS13610	0.34	+0.5
2,978,164	-		HGI48_RS13610	0.34	+2.1
2,978,164	-		HGI48_RS13610	0.34	+1.3
2,978,164	-		HGI48_RS13610	0.34	+1.4
2,978,164	-		HGI48_RS13610	0.34	+0.9
2,978,164	-		HGI48_RS13610	0.34	+2.3
2,978,168	+		HGI48_RS13610	0.36	+1.7
2,978,174	+		HGI48_RS13610	0.37	+1.3
2,978,175	-		HGI48_RS13610	0.38	+0.8
2,978,175	-		HGI48_RS13610	0.38	+2.0
2,978,202	+		HGI48_RS13610	0.45	+0.3
2,978,202	+		HGI48_RS13610	0.45	+1.3
2,978,202	+		HGI48_RS13610	0.45	+1.7
2,978,202	+		HGI48_RS13610	0.45	+0.6
2,978,202	+		HGI48_RS13610	0.45	-1.7
2,978,202	+		HGI48_RS13610	0.45	+2.5
2,978,203	-		HGI48_RS13610	0.46	+1.0
2,978,205	+		HGI48_RS13610	0.46	+0.5
2,978,206	-		HGI48_RS13610	0.46	+2.1
2,978,206	-		HGI48_RS13610	0.46	+1.9
2,978,319	+		HGI48_RS13610	0.79	+1.3
2,978,320	-		HGI48_RS13610	0.79	+1.3
2,978,320	-		HGI48_RS13610	0.79	+1.6
2,978,320	-		HGI48_RS13610	0.79	+1.6
2,978,344	+		HGI48_RS13610	0.86	+2.4
2,978,345	-		HGI48_RS13610	0.86	+1.1
2,978,362	+				+1.7
2,978,363	-				+2.0
2,978,363	-				+1.9
2,978,388	-				+2.3
2,978,393	+				+0.6
2,978,393	+				+1.9
2,978,393	+				+1.7
2,978,394	-				+1.3
2,978,394	-				+0.6
2,978,394	-				+0.9
2,978,412	+				+3.2
2,978,412	+				+1.6
2,978,412	+				+1.7
2,978,412	+				+0.6
2,978,412	+				+0.1
2,978,413	-				+2.0
2,978,413	-				+1.2
2,978,413	-				+2.0
2,978,425	+				+2.0
2,978,425	+				+1.6
2,978,425	+				+0.9
2,978,425	+				+2.0
2,978,425	+				+1.6
2,978,426	-				+0.3
2,978,426	-				+1.3
2,978,426	-				-0.5
2,978,426	-				+1.3
2,978,426	-				+0.1
2,978,426	-				-0.5
2,978,426	-				+2.2
2,978,426	-				+1.2
2,978,426	-				-2.0
2,978,430	+				+1.1
2,978,430	+				+0.9
2,978,430	+				+2.9
2,978,430	+				+1.2
2,978,430	+				+3.8
2,978,431	-				+0.9
2,978,431	-				+1.1
2,978,438	-				+0.9
2,978,470	+				-0.4
2,978,470	+				+1.6
2,978,470	+				+1.2
2,978,470	+				+0.5
2,978,471	-				+0.3
2,978,499	+				+2.9
2,978,505	+				+5.0
2,978,505	+				+1.1
2,978,505	+				+2.3
2,978,506	-				+1.0
2,978,508	+				+0.9
2,978,513	+				+1.3
2,978,513	+				+0.6
2,978,513	+				-0.6
2,978,513	+				+1.9
2,978,513	+				+2.1
2,978,513	+				+2.5
2,978,513	+				+2.9
2,978,514	-				+1.1
2,978,514	-				+0.6
2,978,515	+				+1.5
2,978,516	-				-0.8
2,978,523	+				+2.1
2,978,523	+				+1.3
2,978,523	+				+0.3
2,978,526	+				+2.3
2,978,538	+				+1.7
2,978,579	+				+0.6
2,978,579	+				+1.9
2,978,618	+				+1.1
2,978,625	+				-0.1
2,978,625	+				+1.1
2,978,626	-				+0.1
2,978,637	+				+0.3
2,978,638	-				+1.1
2,978,653	+				+1.2
2,978,667	+				+1.6
2,978,674	+				+0.2
2,978,674	+				+1.6
2,978,674	+				+2.2
2,978,674	+				+1.4
2,978,674	+				+2.9
2,978,674	+				+2.4
2,978,674	+				+0.6
2,978,674	+				+0.6
2,978,675	-				+1.4
2,978,675	-				+1.2
2,978,705	+				+1.5
2,978,706	-				+0.3
2,978,744	-				-0.5
2,978,791	+				-0.0
2,978,990	+				-1.8
2,978,993	-				+2.9
2,978,993	-				-2.7
2,978,993	-				-0.5
2,979,011	+				+1.0
2,979,012	-				+1.1
2,979,013	+				+0.6
2,979,013	+				-1.7
2,979,013	+				-1.1
2,979,020	+				+0.5
2,979,021	-				+1.7
2,979,021	-				-1.5
2,979,021	-				+0.3
2,979,201	+				-1.4
2,979,201	+				-0.1
2,979,201	+				-0.5
2,979,201	+				-2.0
2,979,201	+				-1.8
2,979,201	+				-0.4
2,979,202	-				+0.4
2,979,240	+				-0.7
2,979,240	+				-2.0
2,979,257	+				+0.1
2,979,257	+				-0.7
2,979,257	+				-1.3
2,979,289	+				-0.8
2,979,301	+				-1.2
2,979,304	+				-1.0
2,979,304	+				-0.7
2,979,305	-				+0.3
2,979,305	-				+0.3
2,979,341	+				+0.9
2,979,342	-				+0.3