Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13595

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,974,318	+		HGI48_RS13590	0.52	+1.0
2,974,318	+		HGI48_RS13590	0.52	+0.3
2,974,318	+		HGI48_RS13590	0.52	-2.3
2,974,318	+		HGI48_RS13590	0.52	-1.6
2,974,318	+		HGI48_RS13590	0.52	+0.5
2,974,319	-		HGI48_RS13590	0.52	-0.1
2,974,319	-		HGI48_RS13590	0.52	+0.3
2,974,319	-		HGI48_RS13590	0.52	-0.0
2,974,319	-		HGI48_RS13590	0.52	-0.7
2,974,319	-		HGI48_RS13590	0.52	-0.5
2,974,322	-				+1.9
2,974,450	+				+1.5
2,974,627	+		HGI48_RS13590	0.67	+0.1
2,974,627	+		HGI48_RS13590	0.67	-0.4
2,974,628	-		HGI48_RS13590	0.67	-2.0
2,974,628	-		HGI48_RS13590	0.67	-1.0
2,974,628	-		HGI48_RS13590	0.67	-1.7
2,974,628	-		HGI48_RS13590	0.67	+0.5
2,974,628	-		HGI48_RS13590	0.67	-0.5
2,974,783	+		HGI48_RS13590	0.75	+0.5
2,974,783	+				+1.3
2,974,805	-				+0.7
2,974,813	+		HGI48_RS13590	0.76	-0.0
2,974,813	+		HGI48_RS13590	0.76	+1.1
2,974,880	+		HGI48_RS13590	0.79	-1.3
2,974,881	-		HGI48_RS13590	0.79	-0.7
2,974,881	-		HGI48_RS13590	0.79	-1.3
2,974,954	+				-0.7
2,974,954	+		HGI48_RS13590	0.83	+1.5
2,974,955	-		HGI48_RS13590	0.83	+1.1
2,974,955	-		HGI48_RS13590	0.83	-1.9
2,974,956	+		HGI48_RS13590	0.83	-1.3
2,974,957	-		HGI48_RS13590	0.83	+0.5
2,974,957	-		HGI48_RS13590	0.83	-1.3
2,974,957	-		HGI48_RS13590	0.83	-0.1
2,974,957	-		HGI48_RS13590	0.83	-0.1
2,974,993	+		HGI48_RS13590	0.85	+0.4
2,974,993	+		HGI48_RS13590	0.85	+0.0
2,974,994	-		HGI48_RS13590	0.85	-0.4
2,974,994	-		HGI48_RS13590	0.85	-1.0
2,974,995	+		HGI48_RS13590	0.85	+0.7
2,974,996	-		HGI48_RS13590	0.85	+0.3
2,975,047	+		HGI48_RS13590	0.88	-0.8
2,975,047	+		HGI48_RS13590	0.88	-0.7
2,975,051	-		HGI48_RS13590	0.88	-1.3
2,975,051	-		HGI48_RS13590	0.88	-0.7
2,975,105	+				-2.5
2,975,105	+				+0.3
2,975,105	+				+0.5
2,975,105	+				+0.4
2,975,106	-				-1.0
2,975,106	-				+0.1
2,975,106	-				-1.5
2,975,113	+				-1.0
2,975,113	+				+0.8
2,975,113	+				-2.0
2,975,113	+				+0.1
2,975,113	+				+2.4
2,975,126	+				-3.0
2,975,127	-				+0.0
2,975,180	+				-0.0
2,975,181	-				+0.3
2,975,228	+				+0.3
2,975,229	-				-0.2
2,975,361	+				+0.5
2,975,385	+				+0.1
2,975,385	+				-1.7
2,975,385	+				-0.3
2,975,386	-				+0.0
2,975,386	-				-1.3
2,975,386	-				-1.1
2,975,386	-				-0.3
2,975,388	+				+1.1
2,975,389	-				+0.9
2,975,389	-				+0.1
2,975,389	-				+0.6
2,975,563	-		HGI48_RS13595	0.22	+1.8
2,975,716	+		HGI48_RS13595	0.36	+1.1
2,975,717	-		HGI48_RS13595	0.36	-0.1
2,975,717	-				+1.1
2,975,717	-		HGI48_RS13595	0.36	+1.8
2,975,743	+		HGI48_RS13595	0.38	+0.4
2,975,743	+		HGI48_RS13595	0.38	+0.3
2,975,744	-		HGI48_RS13595	0.38	-1.0
2,975,744	-		HGI48_RS13595	0.38	+1.2
2,975,750	-		HGI48_RS13595	0.39	-1.5
2,975,776	+		HGI48_RS13595	0.41	-0.4
2,975,776	+		HGI48_RS13595	0.41	+1.6
2,975,776	+		HGI48_RS13595	0.41	-0.3
2,975,777	-		HGI48_RS13595	0.41	+0.6
2,975,777	-		HGI48_RS13595	0.41	-0.3
2,975,777	-		HGI48_RS13595	0.41	+2.1
2,975,777	-		HGI48_RS13595	0.41	-1.7
2,975,777	-		HGI48_RS13595	0.41	-0.1
2,975,777	-		HGI48_RS13595	0.41	+0.9
2,975,777	-		HGI48_RS13595	0.41	+1.6
2,975,777	-				+0.3
2,975,830	-		HGI48_RS13595	0.46	+1.8
2,975,830	-		HGI48_RS13595	0.46	+0.4
2,975,855	+		HGI48_RS13595	0.48	+1.1
2,975,945	+		HGI48_RS13595	0.56	-0.3
2,975,945	+		HGI48_RS13595	0.56	+0.8
2,975,946	-		HGI48_RS13595	0.56	+0.5
2,975,946	-		HGI48_RS13595	0.56	+0.9
2,975,974	-		HGI48_RS13595	0.58	-0.5
2,975,991	+		HGI48_RS13595	0.60	+1.3
2,975,991	+		HGI48_RS13595	0.60	+0.6
2,976,108	+		HGI48_RS13595	0.70	-1.5
2,976,108	+		HGI48_RS13595	0.70	-0.0
2,976,118	-		HGI48_RS13595	0.71	+1.7
2,976,141	+		HGI48_RS13595	0.73	+1.5
2,976,141	+		HGI48_RS13595	0.73	+1.6
2,976,142	-		HGI48_RS13595	0.73	+1.4
2,976,144	+				+2.1
2,976,144	+		HGI48_RS13595	0.73	+1.3
2,976,144	+		HGI48_RS13595	0.73	+1.1
2,976,144	+		HGI48_RS13595	0.73	+1.1
2,976,145	-		HGI48_RS13595	0.73	+2.1
2,976,145	-				+2.8
2,976,181	-		HGI48_RS13595	0.77	-0.5
2,976,269	+		HGI48_RS13595	0.84	+1.4
2,976,362	+				+1.9
2,976,362	+				-0.4
2,976,362	+				+0.7
2,976,362	+				+2.3
2,976,363	-				+2.0
2,976,363	-				+0.8
2,976,363	-				+0.1
2,976,409	-				-0.7
2,976,486	-				+0.5
2,976,648	+		HGI48_RS13600	0.23	+1.6
2,976,649	-		HGI48_RS13600	0.23	+2.2
2,976,649	-		HGI48_RS13600	0.23	+0.5
2,976,649	-		HGI48_RS13600	0.23	+1.6
2,976,649	-		HGI48_RS13600	0.23	-2.3
2,976,649	-		HGI48_RS13600	0.23	+2.3
2,976,649	-		HGI48_RS13600	0.23	+0.3
2,976,652	-		HGI48_RS13600	0.24	+2.5
2,976,692	+				+2.5
2,976,704	+		HGI48_RS13600	0.30	+1.4
2,976,704	+		HGI48_RS13600	0.30	+1.1
2,976,705	-		HGI48_RS13600	0.30	+1.2
2,976,705	-		HGI48_RS13600	0.30	+1.4
2,976,705	-		HGI48_RS13600	0.30	+1.8
2,976,705	-		HGI48_RS13600	0.30	+0.6
2,976,708	+				+1.9
2,976,708	+		HGI48_RS13600	0.30	-0.2
2,976,708	+		HGI48_RS13600	0.30	+0.8
2,976,708	+		HGI48_RS13600	0.30	-0.0
2,976,709	-		HGI48_RS13600	0.30	+1.1
2,976,960	+		HGI48_RS13600	0.58	+2.7
2,976,967	+		HGI48_RS13600	0.59	+0.6
2,976,967	+		HGI48_RS13600	0.59	+0.1
2,976,967	+		HGI48_RS13600	0.59	+1.4
2,976,967	+		HGI48_RS13600	0.59	+1.0
2,976,967	+		HGI48_RS13600	0.59	+1.4
2,976,967	+		HGI48_RS13600	0.59	+0.0
2,976,967	+		HGI48_RS13600	0.59	+0.6
2,976,967	+		HGI48_RS13600	0.59	+2.1
2,976,968	-		HGI48_RS13600	0.59	+1.7
2,976,968	-		HGI48_RS13600	0.59	-0.2
2,976,968	-		HGI48_RS13600	0.59	+1.2
2,976,991	+		HGI48_RS13600	0.62	+3.5
2,977,083	+		HGI48_RS13600	0.72	+1.1
2,977,083	+		HGI48_RS13600	0.72	+1.8
2,977,084	-		HGI48_RS13600	0.72	-2.3
2,977,086	+		HGI48_RS13600	0.73	-1.5
2,977,087	-		HGI48_RS13600	0.73	+1.4
2,977,105	+		HGI48_RS13600	0.75	-0.1
2,977,105	+		HGI48_RS13600	0.75	+1.8
2,977,105	+		HGI48_RS13600	0.75	+1.8
2,977,105	+		HGI48_RS13600	0.75	-0.1
2,977,105	+		HGI48_RS13600	0.75	+1.8
2,977,105	+		HGI48_RS13600	0.75	+1.5
2,977,105	+		HGI48_RS13600	0.75	+0.7
2,977,105	+		HGI48_RS13600	0.75	-0.1
2,977,105	+				+1.1
2,977,105	+		HGI48_RS13600	0.75	+0.3
2,977,106	-		HGI48_RS13600	0.75	+0.1
2,977,106	-		HGI48_RS13600	0.75	-0.7
2,977,106	-		HGI48_RS13600	0.75	+3.0
2,977,106	-		HGI48_RS13600	0.75	+1.3
2,977,107	+		HGI48_RS13600	0.75	-0.9
2,977,108	-		HGI48_RS13600	0.75	+0.3
2,977,108	-		HGI48_RS13600	0.75	+2.2
2,977,185	-		HGI48_RS13600	0.84	+1.4
2,977,193	+		HGI48_RS13600	0.85	+1.7
2,977,193	+		HGI48_RS13600	0.85	+1.2
2,977,193	+		HGI48_RS13600	0.85	+1.4
2,977,193	+		HGI48_RS13600	0.85	+2.2
2,977,193	+		HGI48_RS13600	0.85	+1.6
2,977,193	+		HGI48_RS13600	0.85	+1.8
2,977,193	+		HGI48_RS13600	0.85	+0.7
2,977,194	-		HGI48_RS13600	0.85	+0.3
2,977,194	-		HGI48_RS13600	0.85	+1.9
2,977,243	+				+1.6
2,977,243	+				+0.8
2,977,243	+				+1.5
2,977,243	+				-0.6
2,977,244	-				+0.5
2,977,287	+				+0.2
2,977,287	+				+3.8
2,977,287	+				+0.7
2,977,287	+				+1.7
2,977,287	+				-1.7
2,977,288	-				-0.2
2,977,288	-				+1.4
2,977,296	+				+0.5
2,977,296	+				+2.2
2,977,297	-				+1.8
2,977,318	-				+1.7
2,977,318	-				+1.8
2,977,319	+				+2.1
2,977,341	+				+2.0
2,977,341	+				+1.2
2,977,341	+				+1.1
2,977,341	+				+1.6
2,977,342	-				-0.3
2,977,342	-				+0.7
2,977,342	-				+2.1
2,977,342	-				+1.3
2,977,342	-				-0.4
2,977,342	-				+1.7
2,977,345	+				+1.9
2,977,369	+				+0.2
2,977,371	+				+1.6
2,977,371	+				+1.2
2,977,395	-				-0.0