Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13555

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,964,917	+		HGI48_RS13550	0.56	+0.5
2,964,918	-		HGI48_RS13550	0.56	-2.0
2,964,918	-		HGI48_RS13550	0.56	+0.9
2,964,971	+		HGI48_RS13550	0.58	-0.2
2,964,971	+		HGI48_RS13550	0.58	-2.0
2,964,971	+		HGI48_RS13550	0.58	+1.2
2,964,972	-		HGI48_RS13550	0.58	-0.3
2,964,972	-		HGI48_RS13550	0.58	-0.7
2,964,972	-		HGI48_RS13550	0.58	-0.4
2,965,118	+		HGI48_RS13550	0.65	+0.9
2,965,118	+		HGI48_RS13550	0.65	+0.7
2,965,118	+		HGI48_RS13550	0.65	-0.8
2,965,119	-		HGI48_RS13550	0.65	-0.0
2,965,120	+		HGI48_RS13550	0.65	-0.3
2,965,120	+		HGI48_RS13550	0.65	-0.0
2,965,120	+		HGI48_RS13550	0.65	+0.8
2,965,120	+		HGI48_RS13550	0.65	+0.8
2,965,120	+		HGI48_RS13550	0.65	+1.0
2,965,120	+		HGI48_RS13550	0.65	-0.2
2,965,121	-		HGI48_RS13550	0.65	-0.3
2,965,121	-		HGI48_RS13550	0.65	+0.3
2,965,121	-		HGI48_RS13550	0.65	+1.1
2,965,121	-				-1.3
2,965,121	-		HGI48_RS13550	0.65	+0.8
2,965,121	-				+1.1
2,965,148	+		HGI48_RS13550	0.67	-1.3
2,965,148	+		HGI48_RS13550	0.67	+0.5
2,965,148	+		HGI48_RS13550	0.67	-1.1
2,965,148	+		HGI48_RS13550	0.67	-0.1
2,965,148	+		HGI48_RS13550	0.67	-0.2
2,965,149	-		HGI48_RS13550	0.67	-0.3
2,965,149	-		HGI48_RS13550	0.67	-0.3
2,965,149	-		HGI48_RS13550	0.67	-2.7
2,965,149	-		HGI48_RS13550	0.67	-0.1
2,965,149	-		HGI48_RS13550	0.67	-1.3
2,965,199	+		HGI48_RS13550	0.69	+1.6
2,965,199	+		HGI48_RS13550	0.69	+0.8
2,965,238	+		HGI48_RS13550	0.71	-0.1
2,965,238	+		HGI48_RS13550	0.71	+0.6
2,965,359	-		HGI48_RS13550	0.77	+1.6
2,965,359	-		HGI48_RS13550	0.77	+0.5
2,965,367	+		HGI48_RS13550	0.77	-0.4
2,965,367	+		HGI48_RS13550	0.77	+2.0
2,965,367	+		HGI48_RS13550	0.77	+0.9
2,965,367	+		HGI48_RS13550	0.77	+2.3
2,965,367	+		HGI48_RS13550	0.77	-0.3
2,965,367	+		HGI48_RS13550	0.77	-0.3
2,965,367	+		HGI48_RS13550	0.77	-0.3
2,965,379	+		HGI48_RS13550	0.78	+2.2
2,965,379	+		HGI48_RS13550	0.78	-0.5
2,965,380	-		HGI48_RS13550	0.78	+0.7
2,965,425	-		HGI48_RS13550	0.80	+0.1
2,965,430	+		HGI48_RS13550	0.80	+1.1
2,965,430	+				+1.9
2,965,430	+		HGI48_RS13550	0.80	+0.3
2,965,431	-		HGI48_RS13550	0.80	-0.2
2,965,431	-		HGI48_RS13550	0.80	-1.3
2,965,482	-		HGI48_RS13550	0.83	+1.8
2,965,575	+		HGI48_RS13550	0.87	+2.3
2,965,575	+		HGI48_RS13550	0.87	+0.7
2,965,575	+				-0.7
2,965,575	+		HGI48_RS13550	0.87	-0.0
2,965,575	+		HGI48_RS13550	0.87	-0.5
2,965,575	+		HGI48_RS13550	0.87	+1.6
2,965,576	-		HGI48_RS13550	0.87	-0.4
2,965,576	-				-1.3
2,965,576	-		HGI48_RS13550	0.87	+1.0
2,965,576	-		HGI48_RS13550	0.87	-2.3
2,965,576	-		HGI48_RS13550	0.87	+1.2
2,965,676	+				+2.4
2,965,676	+				+0.3
2,965,677	-				+0.1
2,965,677	-				+1.1
2,965,677	-				+0.9
2,965,677	-				-1.0
2,965,694	+				+0.5
2,965,695	-				-0.9
2,965,700	+				-1.0
2,965,700	+				+0.3
2,965,701	-				+0.5
2,965,701	-				+0.8
2,965,701	-				-0.4
2,965,761	+				-0.4
2,965,805	+				+0.8
2,965,806	-				-0.7
2,965,806	-				-0.7
2,965,806	-				+0.5
2,965,860	+				+1.9
2,965,947	-				+0.3
2,965,979	+				-1.3
2,965,979	+		HGI48_RS13555	0.12	+0.5
2,965,979	+		HGI48_RS13555	0.12	-0.7
2,965,979	+		HGI48_RS13555	0.12	+0.5
2,965,980	-		HGI48_RS13555	0.12	+1.6
2,965,980	-		HGI48_RS13555	0.12	+0.3
2,965,980	-				+0.7
2,965,981	+		HGI48_RS13555	0.12	+1.1
2,965,981	+		HGI48_RS13555	0.12	+0.1
2,965,981	+		HGI48_RS13555	0.12	+0.3
2,965,981	+		HGI48_RS13555	0.12	-0.3
2,965,981	+				+2.3
2,965,981	+		HGI48_RS13555	0.12	-0.1
2,965,981	+		HGI48_RS13555	0.12	+1.2
2,965,982	-				-0.3
2,966,098	+		HGI48_RS13555	0.23	+0.1
2,966,098	+		HGI48_RS13555	0.23	+0.1
2,966,098	+		HGI48_RS13555	0.23	+1.4
2,966,098	+		HGI48_RS13555	0.23	+1.5
2,966,098	+		HGI48_RS13555	0.23	+0.7
2,966,099	-		HGI48_RS13555	0.23	+0.9
2,966,099	-		HGI48_RS13555	0.23	+1.1
2,966,099	-		HGI48_RS13555	0.23	+0.6
2,966,153	+		HGI48_RS13555	0.27	+2.4
2,966,153	+		HGI48_RS13555	0.27	+2.4
2,966,153	+		HGI48_RS13555	0.27	+0.1
2,966,153	+		HGI48_RS13555	0.27	+0.7
2,966,154	-		HGI48_RS13555	0.28	+0.3
2,966,171	+		HGI48_RS13555	0.29	+0.3
2,966,172	-		HGI48_RS13555	0.29	+0.7
2,966,194	+		HGI48_RS13555	0.31	+1.1
2,966,194	+		HGI48_RS13555	0.31	-2.7
2,966,194	+				-1.3
2,966,194	+		HGI48_RS13555	0.31	+1.3
2,966,194	+		HGI48_RS13555	0.31	+1.3
2,966,194	+		HGI48_RS13555	0.31	+0.1
2,966,194	+		HGI48_RS13555	0.31	+0.6
2,966,194	+		HGI48_RS13555	0.31	-0.1
2,966,195	-		HGI48_RS13555	0.31	-0.1
2,966,195	-		HGI48_RS13555	0.31	+0.8
2,966,195	-				+0.3
2,966,195	-		HGI48_RS13555	0.31	+0.6
2,966,195	-		HGI48_RS13555	0.31	+2.0
2,966,195	-		HGI48_RS13555	0.31	+1.0
2,966,271	+		HGI48_RS13555	0.38	+0.3
2,966,297	+		HGI48_RS13555	0.40	+1.4
2,966,325	+				+1.9
2,966,325	+		HGI48_RS13555	0.42	+0.2
2,966,326	-		HGI48_RS13555	0.42	+1.2
2,966,338	-		HGI48_RS13555	0.43	-0.1
2,966,338	-		HGI48_RS13555	0.43	-0.0
2,966,340	+		HGI48_RS13555	0.44	+1.6
2,966,341	-		HGI48_RS13555	0.44	-0.0
2,966,350	+		HGI48_RS13555	0.45	+0.2
2,966,350	+		HGI48_RS13555	0.45	+1.1
2,966,351	-		HGI48_RS13555	0.45	+1.6
2,966,351	-		HGI48_RS13555	0.45	+0.4
2,966,379	+		HGI48_RS13555	0.47	+0.5
2,966,379	+		HGI48_RS13555	0.47	-0.1
2,966,380	-		HGI48_RS13555	0.47	+0.6
2,966,424	+		HGI48_RS13555	0.51	+1.4
2,966,473	+				+0.3
2,966,473	+		HGI48_RS13555	0.55	+0.3
2,966,473	+		HGI48_RS13555	0.55	+1.3
2,966,473	+		HGI48_RS13555	0.55	+0.6
2,966,473	+		HGI48_RS13555	0.55	-0.7
2,966,473	+		HGI48_RS13555	0.55	-1.0
2,966,474	-		HGI48_RS13555	0.55	-1.0
2,966,474	-		HGI48_RS13555	0.55	+0.1
2,966,474	-		HGI48_RS13555	0.55	+0.6
2,966,474	-				+0.7
2,966,481	+				+0.7
2,966,481	+		HGI48_RS13555	0.56	+0.1
2,966,481	+		HGI48_RS13555	0.56	+0.7
2,966,481	+				+1.7
2,966,482	-		HGI48_RS13555	0.56	-1.1
2,966,490	+		HGI48_RS13555	0.57	-0.5
2,966,490	+		HGI48_RS13555	0.57	+1.2
2,966,491	-		HGI48_RS13555	0.57	+0.7
2,966,491	-				+1.5
2,966,511	+		HGI48_RS13555	0.59	+0.7
2,966,511	+		HGI48_RS13555	0.59	+1.1
2,966,541	+		HGI48_RS13555	0.61	+0.1
2,966,541	+		HGI48_RS13555	0.61	+2.3
2,966,541	+		HGI48_RS13555	0.61	+1.6
2,966,542	-		HGI48_RS13555	0.61	+1.3
2,966,547	+		HGI48_RS13555	0.62	-1.5
2,966,547	+		HGI48_RS13555	0.62	-1.7
2,966,563	+				+0.9
2,966,580	+		HGI48_RS13555	0.64	-0.1
2,966,580	+		HGI48_RS13555	0.64	+0.3
2,966,580	+		HGI48_RS13555	0.64	+0.2
2,966,580	+		HGI48_RS13555	0.64	+0.0
2,966,581	-		HGI48_RS13555	0.65	+2.1
2,966,581	-		HGI48_RS13555	0.65	+0.8
2,966,596	+		HGI48_RS13555	0.66	-0.4
2,966,625	+		HGI48_RS13555	0.68	+0.6
2,966,625	+		HGI48_RS13555	0.68	+0.9
2,966,698	+				+1.1
2,966,698	+		HGI48_RS13555	0.75	+1.0
2,966,699	-		HGI48_RS13555	0.75	+0.6
2,966,699	-		HGI48_RS13555	0.75	-1.0
2,966,699	-		HGI48_RS13555	0.75	+0.4
2,966,699	-		HGI48_RS13555	0.75	+0.3
2,966,704	-		HGI48_RS13555	0.75	+0.0
2,966,781	+		HGI48_RS13555	0.82	+2.8
2,966,782	-		HGI48_RS13555	0.82	-0.4
2,966,811	+		HGI48_RS13555	0.85	+0.9
2,966,811	+		HGI48_RS13555	0.85	+0.5
2,966,812	-		HGI48_RS13555	0.85	-0.1
2,966,812	-				+1.1
2,966,812	-		HGI48_RS13555	0.85	+0.9
2,966,832	+		HGI48_RS13555	0.86	-0.1
2,966,832	+		HGI48_RS13555	0.86	+1.3
2,966,832	+		HGI48_RS13555	0.86	+0.1
2,966,877	+				+1.6
2,966,877	+				-1.7
2,966,877	+				+0.3
2,966,877	+				+0.2
2,966,877	+				-0.2
2,966,877	+				+0.5
2,966,878	-				+0.0
2,966,878	-				+0.8
2,966,878	-				+0.5
2,966,989	+				+0.1
2,967,019	+				+2.4
2,967,020	-				+0.3
2,967,025	+				-0.7
2,967,025	+				+0.9
2,967,026	-				-1.3
2,967,026	-				+0.9
2,967,026	-				-0.5
2,967,026	-				-0.7
2,967,027	+				-1.4
2,967,027	+				+0.6
2,967,028	-				+0.7
2,967,028	-				+0.1
2,967,028	-				-0.5
2,967,028	-				+1.9
2,967,036	-				+0.1
2,967,036	-				-0.7
2,967,036	-				-1.7
2,967,091	+				+0.3
2,967,092	-				-0.7
2,967,096	-				-0.1
2,967,100	+				+0.5
2,967,100	+				+1.1
2,967,150	+				-0.3
2,967,151	-				-1.5
2,967,162	+				-1.7
2,967,162	+				+1.9
2,967,163	-				+0.1
2,967,163	-				-0.7
2,967,163	-				-0.5
2,967,163	-				-1.3
2,967,187	+				+0.0
2,967,268	-				-2.3
2,967,268	-				+0.9
2,967,300	+		HGI48_RS13560	0.13	+0.3
2,967,301	-		HGI48_RS13560	0.13	-1.6
2,967,464	-		HGI48_RS13560	0.39	+0.6
2,967,478	-		HGI48_RS13560	0.41	-0.9
2,967,486	+		HGI48_RS13560	0.42	+0.3
2,967,487	-		HGI48_RS13560	0.42	+0.3
2,967,509	+		HGI48_RS13560	0.46	+0.3
2,967,509	+		HGI48_RS13560	0.46	-0.0
2,967,510	-				+0.9
2,967,510	-		HGI48_RS13560	0.46	+1.2
2,967,547	+		HGI48_RS13560	0.52	-0.8
2,967,548	-		HGI48_RS13560	0.52	-1.1
2,967,685	+		HGI48_RS13560	0.73	-0.1
2,967,685	+		HGI48_RS13560	0.73	-0.3
2,967,685	+		HGI48_RS13560	0.73	-0.1
2,967,685	+		HGI48_RS13560	0.73	+0.9
2,967,685	+		HGI48_RS13560	0.73	+0.3
2,967,686	-		HGI48_RS13560	0.73	+0.5
2,967,686	-		HGI48_RS13560	0.73	-0.5
2,967,689	+		HGI48_RS13560	0.74	-0.7
2,967,689	+		HGI48_RS13560	0.74	-0.4
2,967,689	+		HGI48_RS13560	0.74	-1.4
2,967,689	+		HGI48_RS13560	0.74	-1.3
2,967,689	+		HGI48_RS13560	0.74	+0.3
2,967,690	-		HGI48_RS13560	0.74	+0.6
2,967,690	-		HGI48_RS13560	0.74	-0.9
2,967,749	-		HGI48_RS13560	0.83	-0.7
2,967,807	+				-0.0
2,967,807	+				-0.7
2,967,808	-				-2.7
2,967,869	+				+0.6
2,967,869	+				+0.3
2,967,869	+				-1.3
2,967,869	+				-0.4
2,967,870	-				-2.3
2,967,870	-				-0.7
2,967,870	-				+0.6
2,967,873	+				-0.7
2,967,874	-				-0.3
2,967,874	-				-1.3
2,967,874	-				-0.4
2,967,874	-				-0.1
2,967,874	-				-0.3
2,967,895	-				-0.1
2,967,933	+		HGI48_RS13565	0.17	+1.8
2,967,941	+		HGI48_RS13565	0.19	-0.6
2,967,972	+		HGI48_RS13565	0.27	-0.7
2,967,972	+		HGI48_RS13565	0.27	+0.9
2,967,973	-				+0.3
2,967,973	-		HGI48_RS13565	0.27	-0.6
2,967,973	-		HGI48_RS13565	0.27	+0.3
2,967,973	-				+1.7
2,967,975	+		HGI48_RS13565	0.27	-0.7
2,967,976	-		HGI48_RS13565	0.28	-0.4
2,967,976	-		HGI48_RS13565	0.28	+0.6
2,967,976	-		HGI48_RS13565	0.28	-1.3
2,967,976	-		HGI48_RS13565	0.28	-0.2
2,967,976	-		HGI48_RS13565	0.28	-0.9