Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13525

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,960,139	+		HGI48_RS13515	0.24	-0.2
2,960,139	+		HGI48_RS13515	0.24	+0.8
2,960,139	+		HGI48_RS13515	0.24	+0.7
2,960,140	-		HGI48_RS13515	0.24	+0.4
2,960,140	-		HGI48_RS13515	0.24	-0.5
2,960,140	-		HGI48_RS13515	0.24	+1.1
2,960,140	-		HGI48_RS13515	0.24	+1.6
2,960,140	-		HGI48_RS13515	0.24	-1.0
2,960,140	-		HGI48_RS13515	0.24	+0.9
2,960,141	+		HGI48_RS13515	0.24	+1.1
2,960,142	-				-0.7
2,960,192	+				+1.9
2,960,192	+		HGI48_RS13515	0.31	+0.3
2,960,193	-		HGI48_RS13515	0.32	+0.9
2,960,193	-		HGI48_RS13515	0.32	+0.3
2,960,229	+				+2.9
2,960,262	+		HGI48_RS13515	0.42	+1.1
2,960,263	-		HGI48_RS13515	0.42	+0.7
2,960,465	-		HGI48_RS13515	0.72	+1.4
2,960,556	+		HGI48_RS13515	0.86	+2.8
2,960,556	+		HGI48_RS13515	0.86	-0.7
2,960,557	-				+1.5
2,960,557	-		HGI48_RS13515	0.86	+0.7
2,960,557	-		HGI48_RS13515	0.86	+1.0
2,960,563	+		HGI48_RS13515	0.87	+0.4
2,960,563	+		HGI48_RS13515	0.87	+1.8
2,960,577	+		HGI48_RS13515	0.89	+3.0
2,960,578	-				+0.3
2,960,578	-		HGI48_RS13515	0.89	+2.2
2,960,578	-		HGI48_RS13515	0.89	+1.8
2,960,613	+				-2.7
2,960,613	+				+0.8
2,960,613	+				+1.7
2,960,614	-				+1.2
2,960,614	-				-0.2
2,960,614	-				-0.4
2,960,614	-				+2.1
2,960,616	+				+0.3
2,960,616	+				+0.7
2,960,616	+				-1.4
2,960,617	-				+0.8
2,960,617	-				+2.7
2,960,617	-				+1.3
2,960,617	-				+1.7
2,960,666	+				+0.6
2,960,680	+				-0.8
2,960,710	-		HGI48_RS13520	0.11	+0.6
2,960,716	+		HGI48_RS13520	0.13	+0.0
2,960,716	+		HGI48_RS13520	0.13	+2.5
2,960,717	-		HGI48_RS13520	0.13	+0.6
2,960,717	-		HGI48_RS13520	0.13	+0.7
2,960,717	-		HGI48_RS13520	0.13	+1.7
2,960,735	+		HGI48_RS13520	0.17	+0.8
2,960,735	+		HGI48_RS13520	0.17	+0.3
2,960,735	+		HGI48_RS13520	0.17	+0.7
2,960,736	-		HGI48_RS13520	0.18	+2.1
2,960,801	+		HGI48_RS13520	0.34	-0.5
2,960,801	+		HGI48_RS13520	0.34	+0.3
2,960,802	-		HGI48_RS13520	0.34	+0.6
2,960,802	-		HGI48_RS13520	0.34	+1.4
2,960,802	-		HGI48_RS13520	0.34	+0.3
2,960,802	-		HGI48_RS13520	0.34	+0.8
2,960,802	-		HGI48_RS13520	0.34	-0.6
2,960,837	+		HGI48_RS13520	0.42	-1.1
2,960,838	-		HGI48_RS13520	0.43	+0.3
2,960,838	-		HGI48_RS13520	0.43	-1.7
2,960,991	+		HGI48_RS13520	0.80	+0.3
2,960,992	-		HGI48_RS13520	0.81	+1.0
2,961,055	-				+0.5
2,961,057	+				-0.7
2,961,083	+				+0.9
2,961,083	+				+1.4
2,961,083	+				+0.9
2,961,083	+				-0.9
2,961,083	+				+1.3
2,961,083	+				-0.1
2,961,083	+				+0.3
2,961,083	+				+1.6
2,961,083	+				+1.4
2,961,083	+				+0.3
2,961,084	-				+1.8
2,961,084	-				+0.2
2,961,084	-				-1.3
2,961,084	-				-0.3
2,961,084	-				-0.4
2,961,084	-				-1.1
2,961,084	-				+2.3
2,961,084	-				-0.5
2,961,084	-				+0.8
2,961,084	-				+1.0
2,961,084	-				+1.3
2,961,085	+				+0.3
2,961,085	+				+2.0
2,961,085	+				+1.9
2,961,085	+				+0.6
2,961,085	+				-1.3
2,961,086	-				-0.4
2,961,086	-				+1.0
2,961,105	-				+0.4
2,961,124	+				-0.5
2,961,125	-				-0.9
2,961,177	-		HGI48_RS13525	0.18	-1.7
2,961,177	-		HGI48_RS13525	0.18	-0.7
2,961,177	-		HGI48_RS13525	0.18	-1.6
2,961,205	-		HGI48_RS13525	0.24	+1.2
2,961,205	-		HGI48_RS13525	0.24	+0.7
2,961,205	-		HGI48_RS13525	0.24	+1.4
2,961,263	+		HGI48_RS13525	0.38	+1.3
2,961,263	+		HGI48_RS13525	0.38	+0.8
2,961,289	+				+0.3
2,961,289	+		HGI48_RS13525	0.44	-2.5
2,961,290	-		HGI48_RS13525	0.45	+0.5
2,961,545	+				+1.1
2,961,555	+				+1.0
2,961,555	+				-0.4
2,961,593	-				+0.5
2,961,598	+				+1.3
2,961,598	+				-0.1
2,961,598	+				+0.9
2,961,599	-				+0.7
2,961,612	-				-0.7
2,961,612	-				+0.5
2,961,612	-				+1.5
2,961,615	+				-2.0
2,961,615	+				-1.2
2,961,616	-				+1.8
2,961,623	+				+1.1
2,961,624	-				-1.0
2,961,629	+				-0.6
2,961,630	-				+2.3
2,961,630	-				-1.6
2,961,630	-				+0.3
2,961,637	+				-0.7
2,961,638	-				+1.3
2,961,638	-				-0.0
2,961,638	-				+0.9
2,961,644	-				+0.8
2,961,682	+				-0.7
2,961,683	-				+1.3
2,961,709	-				+0.4
2,961,709	-				+2.3
2,961,712	+				+1.1
2,961,712	+				+0.4
2,961,712	+				+1.5
2,961,712	+				+0.2
2,961,712	+				+1.3
2,961,713	-				+1.5
2,961,713	-				+1.9
2,961,728	-				+0.3
2,961,728	-				+0.5
2,961,806	+		HGI48_RS13530	0.17	-0.3
2,961,821	+		HGI48_RS13530	0.20	+1.5
2,961,821	+		HGI48_RS13530	0.20	+0.7
2,961,822	-		HGI48_RS13530	0.20	-0.5
2,961,827	+		HGI48_RS13530	0.20	-0.9
2,961,828	-		HGI48_RS13530	0.21	+0.6
2,961,828	-		HGI48_RS13530	0.21	+0.7
2,961,828	-		HGI48_RS13530	0.21	+2.5
2,961,987	+		HGI48_RS13530	0.44	+0.4
2,961,987	+		HGI48_RS13530	0.44	-0.2
2,961,987	+				+0.7
2,961,987	+		HGI48_RS13530	0.44	+0.9
2,961,987	+		HGI48_RS13530	0.44	+1.8
2,961,987	+		HGI48_RS13530	0.44	+0.6
2,961,988	-		HGI48_RS13530	0.45	+0.5
2,961,988	-		HGI48_RS13530	0.45	+0.6
2,961,988	-		HGI48_RS13530	0.45	+1.6
2,961,988	-		HGI48_RS13530	0.45	-0.7
2,961,988	-		HGI48_RS13530	0.45	+0.8
2,961,988	-		HGI48_RS13530	0.45	-0.0
2,962,043	+		HGI48_RS13530	0.53	-0.9
2,962,043	+		HGI48_RS13530	0.53	-1.7
2,962,044	-		HGI48_RS13530	0.53	+0.5
2,962,044	-		HGI48_RS13530	0.53	+0.1
2,962,044	-		HGI48_RS13530	0.53	+1.7
2,962,044	-		HGI48_RS13530	0.53	+0.5
2,962,044	-		HGI48_RS13530	0.53	+0.5
2,962,044	-		HGI48_RS13530	0.53	+0.9
2,962,044	-		HGI48_RS13530	0.53	+1.6
2,962,148	+		HGI48_RS13530	0.68	+0.1
2,962,148	+		HGI48_RS13530	0.68	+0.1
2,962,148	+		HGI48_RS13530	0.68	-0.3
2,962,148	+		HGI48_RS13530	0.68	+0.3
2,962,148	+		HGI48_RS13530	0.68	-1.9
2,962,149	-		HGI48_RS13530	0.69	+0.9
2,962,149	-		HGI48_RS13530	0.69	+0.8
2,962,149	-		HGI48_RS13530	0.69	+2.1
2,962,149	-		HGI48_RS13530	0.69	+1.0
2,962,152	-		HGI48_RS13530	0.69	+1.6
2,962,152	-		HGI48_RS13530	0.69	+0.6
2,962,152	-		HGI48_RS13530	0.69	-0.1
2,962,152	-		HGI48_RS13530	0.69	-0.0
2,962,161	-		HGI48_RS13530	0.70	+0.3
2,962,166	+		HGI48_RS13530	0.71	-0.7
2,962,340	+				+0.5
2,962,356	+				-2.0
2,962,370	-				-1.2
2,962,395	+				-2.0
2,962,395	+				-0.4
2,962,395	+				+0.9
2,962,395	+				-0.1
2,962,395	+				+0.8
2,962,395	+				+0.2
2,962,395	+				-0.4
2,962,396	-				-1.0
2,962,396	-				-2.0
2,962,396	-				-1.1
2,962,396	-				-0.7
2,962,396	-				-2.5
2,962,396	-				-2.5
2,962,400	-				-0.7
2,962,400	-				-1.1
2,962,400	-				-3.0
2,962,400	-				-1.0
2,962,421	+				-1.4
2,962,426	-				-1.3
2,962,439	-				-1.4
2,962,439	-				-1.3
2,962,442	+				+0.3
2,962,442	+				-0.9
2,962,464	+				+0.8
2,962,475	-				-0.2
2,962,499	+				-2.3
2,962,500	-				-1.0