Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13515

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,959,016	+		HGI48_RS13510	0.25	+0.6
2,959,017	-		HGI48_RS13510	0.25	+1.8
2,959,050	+		HGI48_RS13510	0.28	+1.5
2,959,050	+				-0.3
2,959,050	+		HGI48_RS13510	0.28	+0.8
2,959,050	+		HGI48_RS13510	0.28	+0.8
2,959,050	+		HGI48_RS13510	0.28	-1.3
2,959,050	+		HGI48_RS13510	0.28	+0.7
2,959,050	+		HGI48_RS13510	0.28	-0.3
2,959,051	-		HGI48_RS13510	0.28	-0.8
2,959,051	-		HGI48_RS13510	0.28	+0.1
2,959,051	-				+0.3
2,959,051	-		HGI48_RS13510	0.28	+0.1
2,959,051	-		HGI48_RS13510	0.28	-0.5
2,959,051	-		HGI48_RS13510	0.28	+1.3
2,959,051	-		HGI48_RS13510	0.28	+0.5
2,959,051	-		HGI48_RS13510	0.28	-1.3
2,959,051	-		HGI48_RS13510	0.28	-0.1
2,959,051	-		HGI48_RS13510	0.28	+0.7
2,959,052	+		HGI48_RS13510	0.28	-2.0
2,959,076	+		HGI48_RS13510	0.30	+0.3
2,959,076	+		HGI48_RS13510	0.30	+0.1
2,959,077	-		HGI48_RS13510	0.30	+0.8
2,959,149	+				+0.3
2,959,149	+		HGI48_RS13510	0.36	+0.5
2,959,150	-		HGI48_RS13510	0.36	-1.0
2,959,186	-		HGI48_RS13510	0.39	+1.4
2,959,194	+		HGI48_RS13510	0.40	-1.8
2,959,209	+		HGI48_RS13510	0.41	+0.3
2,959,209	+		HGI48_RS13510	0.41	+1.3
2,959,227	+				+1.0
2,959,289	+		HGI48_RS13510	0.48	+0.6
2,959,289	+		HGI48_RS13510	0.48	+1.4
2,959,290	-		HGI48_RS13510	0.48	+0.5
2,959,290	-		HGI48_RS13510	0.48	+0.3
2,959,325	+		HGI48_RS13510	0.51	-0.8
2,959,326	-		HGI48_RS13510	0.51	+0.2
2,959,338	+		HGI48_RS13510	0.52	-0.2
2,959,339	-		HGI48_RS13510	0.52	+0.5
2,959,356	+		HGI48_RS13510	0.53	-0.9
2,959,356	+		HGI48_RS13510	0.53	+1.0
2,959,357	-		HGI48_RS13510	0.54	+0.6
2,959,361	+		HGI48_RS13510	0.54	+0.2
2,959,361	+		HGI48_RS13510	0.54	+1.1
2,959,361	+		HGI48_RS13510	0.54	+1.0
2,959,361	+		HGI48_RS13510	0.54	+1.9
2,959,361	+				+0.3
2,959,361	+		HGI48_RS13510	0.54	+1.5
2,959,362	-		HGI48_RS13510	0.54	-0.6
2,959,362	-		HGI48_RS13510	0.54	+1.4
2,959,362	-		HGI48_RS13510	0.54	+0.5
2,959,362	-		HGI48_RS13510	0.54	+0.5
2,959,362	-		HGI48_RS13510	0.54	+0.2
2,959,362	-		HGI48_RS13510	0.54	+0.7
2,959,371	+		HGI48_RS13510	0.55	+2.2
2,959,371	+		HGI48_RS13510	0.55	-0.2
2,959,371	+				+1.5
2,959,372	-		HGI48_RS13510	0.55	-0.5
2,959,372	-		HGI48_RS13510	0.55	+1.4
2,959,380	+		HGI48_RS13510	0.55	-0.9
2,959,381	-		HGI48_RS13510	0.56	-0.5
2,959,381	-		HGI48_RS13510	0.56	+0.3
2,959,382	+		HGI48_RS13510	0.56	+0.9
2,959,382	+		HGI48_RS13510	0.56	+1.5
2,959,382	+		HGI48_RS13510	0.56	-0.7
2,959,382	+				+0.9
2,959,383	-		HGI48_RS13510	0.56	+0.3
2,959,383	-		HGI48_RS13510	0.56	+0.6
2,959,392	+		HGI48_RS13510	0.56	-0.1
2,959,392	+		HGI48_RS13510	0.56	+1.3
2,959,392	+				+0.7
2,959,393	-				+1.6
2,959,393	-		HGI48_RS13510	0.56	-0.7
2,959,584	+		HGI48_RS13510	0.72	-1.8
2,959,587	+		HGI48_RS13510	0.73	+0.9
2,959,587	+		HGI48_RS13510	0.73	-1.3
2,959,588	-		HGI48_RS13510	0.73	-0.5
2,959,588	-		HGI48_RS13510	0.73	+0.6
2,959,591	+				-0.3
2,959,591	+		HGI48_RS13510	0.73	-0.1
2,959,591	+		HGI48_RS13510	0.73	+2.7
2,959,592	-		HGI48_RS13510	0.73	+0.7
2,959,592	-		HGI48_RS13510	0.73	+0.3
2,959,592	-		HGI48_RS13510	0.73	+1.6
2,959,592	-		HGI48_RS13510	0.73	+0.6
2,959,635	-		HGI48_RS13510	0.77	+1.6
2,959,653	+		HGI48_RS13510	0.78	+0.9
2,959,710	+		HGI48_RS13510	0.83	+1.3
2,959,710	+		HGI48_RS13510	0.83	+0.6
2,959,711	-				+0.7
2,959,711	-		HGI48_RS13510	0.83	-0.7
2,959,711	-		HGI48_RS13510	0.83	+1.1
2,959,711	-		HGI48_RS13510	0.83	-0.1
2,959,711	-		HGI48_RS13510	0.83	-0.3
2,959,719	+		HGI48_RS13510	0.84	-0.2
2,959,719	+		HGI48_RS13510	0.84	+1.0
2,959,720	-		HGI48_RS13510	0.84	+0.9
2,959,787	+		HGI48_RS13510	0.89	+3.2
2,959,787	+		HGI48_RS13510	0.89	+0.5
2,959,787	+		HGI48_RS13510	0.89	-0.9
2,959,787	+		HGI48_RS13510	0.89	+0.7
2,959,787	+		HGI48_RS13510	0.89	+1.4
2,959,787	+		HGI48_RS13510	0.89	+0.7
2,959,787	+		HGI48_RS13510	0.89	+1.7
2,959,787	+		HGI48_RS13510	0.89	+0.2
2,959,787	+		HGI48_RS13510	0.89	+1.4
2,959,787	+		HGI48_RS13510	0.89	-0.1
2,959,787	+		HGI48_RS13510	0.89	-0.2
2,959,787	+		HGI48_RS13510	0.89	+2.6
2,959,787	+		HGI48_RS13510	0.89	+0.2
2,959,787	+		HGI48_RS13510	0.89	-1.5
2,959,787	+		HGI48_RS13510	0.89	-0.4
2,959,787	+		HGI48_RS13510	0.89	+0.3
2,959,787	+		HGI48_RS13510	0.89	-2.7
2,959,787	+		HGI48_RS13510	0.89	+0.1
2,959,787	+				+1.7
2,959,787	+		HGI48_RS13510	0.89	+1.7
2,959,787	+		HGI48_RS13510	0.89	+1.5
2,959,787	+		HGI48_RS13510	0.89	-0.1
2,959,787	+		HGI48_RS13510	0.89	-0.2
2,959,787	+		HGI48_RS13510	0.89	+2.2
2,959,787	+				+2.1
2,959,787	+		HGI48_RS13510	0.89	-0.1
2,959,787	+		HGI48_RS13510	0.89	+0.9
2,959,787	+		HGI48_RS13510	0.89	-1.3
2,959,787	+		HGI48_RS13510	0.89	-0.7
2,959,787	+		HGI48_RS13510	0.89	+0.1
2,959,788	-		HGI48_RS13510	0.89	+0.4
2,959,788	-		HGI48_RS13510	0.89	+1.3
2,959,788	-		HGI48_RS13510	0.89	+0.6
2,959,788	-		HGI48_RS13510	0.89	+0.5
2,959,788	-		HGI48_RS13510	0.89	+0.2
2,959,788	-		HGI48_RS13510	0.89	+1.9
2,959,788	-		HGI48_RS13510	0.89	-0.3
2,959,788	-		HGI48_RS13510	0.89	-0.4
2,959,788	-		HGI48_RS13510	0.89	+0.4
2,959,788	-		HGI48_RS13510	0.89	+0.5
2,959,788	-		HGI48_RS13510	0.89	+0.9
2,959,788	-		HGI48_RS13510	0.89	+1.5
2,959,788	-				+1.3
2,959,788	-		HGI48_RS13510	0.89	+1.5
2,959,788	-		HGI48_RS13510	0.89	+1.6
2,959,788	-		HGI48_RS13510	0.89	-0.1
2,959,788	-				-0.3
2,959,788	-		HGI48_RS13510	0.89	+0.3
2,959,788	-		HGI48_RS13510	0.89	-0.8
2,959,792	-		HGI48_RS13510	0.90	+0.8
2,959,792	-		HGI48_RS13510	0.90	+0.5
2,959,792	-		HGI48_RS13510	0.90	-0.4
2,959,806	+				-1.3
2,959,807	-				+1.5
2,959,807	-				+0.9
2,959,886	-				+0.6
2,959,886	-				+1.1
2,959,886	-				+0.1
2,959,914	+				+0.3
2,959,914	+				+1.2
2,959,914	+				-0.9
2,959,943	+				+0.8
2,959,943	+				-0.7
2,959,967	+				+2.0
2,959,967	+				+1.4
2,959,967	+				+0.0
2,959,968	-				+0.2
2,959,968	-				-1.7
2,959,968	-				-1.3
2,959,969	+				+0.9
2,959,970	-				-0.4
2,959,976	-				-2.5
2,959,996	+				+1.0
2,959,996	+				-0.4
2,959,996	+				+1.8
2,959,996	+				-0.5
2,959,997	-				-0.2
2,959,997	-				-1.5
2,959,997	-				+1.1
2,960,038	+				+1.0
2,960,039	-				+1.0
2,960,075	+				+1.1
2,960,075	+		HGI48_RS13515	0.14	+0.5
2,960,075	+		HGI48_RS13515	0.14	+0.3
2,960,076	-		HGI48_RS13515	0.14	-1.0
2,960,076	-		HGI48_RS13515	0.14	-0.5
2,960,081	+		HGI48_RS13515	0.15	-0.5
2,960,081	+		HGI48_RS13515	0.15	+1.2
2,960,082	-		HGI48_RS13515	0.15	+1.7
2,960,082	-		HGI48_RS13515	0.15	+0.4
2,960,098	+		HGI48_RS13515	0.17	+0.3
2,960,139	+		HGI48_RS13515	0.24	-0.2
2,960,139	+		HGI48_RS13515	0.24	+0.8
2,960,139	+		HGI48_RS13515	0.24	+0.7
2,960,140	-		HGI48_RS13515	0.24	+0.4
2,960,140	-		HGI48_RS13515	0.24	-0.5
2,960,140	-		HGI48_RS13515	0.24	+1.1
2,960,140	-		HGI48_RS13515	0.24	+1.6
2,960,140	-		HGI48_RS13515	0.24	-1.0
2,960,140	-		HGI48_RS13515	0.24	+0.9
2,960,141	+		HGI48_RS13515	0.24	+1.1
2,960,142	-				-0.7
2,960,192	+				+1.9
2,960,192	+		HGI48_RS13515	0.31	+0.3
2,960,193	-		HGI48_RS13515	0.32	+0.9
2,960,193	-		HGI48_RS13515	0.32	+0.3
2,960,229	+				+2.9
2,960,262	+		HGI48_RS13515	0.42	+1.1
2,960,263	-		HGI48_RS13515	0.42	+0.7
2,960,465	-		HGI48_RS13515	0.72	+1.4
2,960,556	+		HGI48_RS13515	0.86	+2.8
2,960,556	+		HGI48_RS13515	0.86	-0.7
2,960,557	-				+1.5
2,960,557	-		HGI48_RS13515	0.86	+0.7
2,960,557	-		HGI48_RS13515	0.86	+1.0
2,960,563	+		HGI48_RS13515	0.87	+0.4
2,960,563	+		HGI48_RS13515	0.87	+1.8
2,960,577	+		HGI48_RS13515	0.89	+3.0
2,960,578	-				+0.3
2,960,578	-		HGI48_RS13515	0.89	+2.2
2,960,578	-		HGI48_RS13515	0.89	+1.8
2,960,613	+				-2.7
2,960,613	+				+0.8
2,960,613	+				+1.7
2,960,614	-				+1.2
2,960,614	-				-0.2
2,960,614	-				-0.4
2,960,614	-				+2.1
2,960,616	+				+0.3
2,960,616	+				+0.7
2,960,616	+				-1.4
2,960,617	-				+0.8
2,960,617	-				+2.7
2,960,617	-				+1.3
2,960,617	-				+1.7
2,960,666	+				+0.6
2,960,680	+				-0.8
2,960,710	-		HGI48_RS13520	0.11	+0.6
2,960,716	+		HGI48_RS13520	0.13	+0.0
2,960,716	+		HGI48_RS13520	0.13	+2.5
2,960,717	-		HGI48_RS13520	0.13	+0.6
2,960,717	-		HGI48_RS13520	0.13	+0.7
2,960,717	-		HGI48_RS13520	0.13	+1.7
2,960,735	+		HGI48_RS13520	0.17	+0.8
2,960,735	+		HGI48_RS13520	0.17	+0.3
2,960,735	+		HGI48_RS13520	0.17	+0.7
2,960,736	-		HGI48_RS13520	0.18	+2.1
2,960,801	+		HGI48_RS13520	0.34	-0.5
2,960,801	+		HGI48_RS13520	0.34	+0.3
2,960,802	-		HGI48_RS13520	0.34	+0.6
2,960,802	-		HGI48_RS13520	0.34	+1.4
2,960,802	-		HGI48_RS13520	0.34	+0.3
2,960,802	-		HGI48_RS13520	0.34	+0.8
2,960,802	-		HGI48_RS13520	0.34	-0.6
2,960,837	+		HGI48_RS13520	0.42	-1.1
2,960,838	-		HGI48_RS13520	0.43	+0.3
2,960,838	-		HGI48_RS13520	0.43	-1.7
2,960,991	+		HGI48_RS13520	0.80	+0.3
2,960,992	-		HGI48_RS13520	0.81	+1.0
2,961,055	-				+0.5
2,961,057	+				-0.7
2,961,083	+				+0.9
2,961,083	+				+1.4
2,961,083	+				+0.9
2,961,083	+				-0.9
2,961,083	+				+1.3
2,961,083	+				-0.1
2,961,083	+				+0.3
2,961,083	+				+1.6
2,961,083	+				+1.4
2,961,083	+				+0.3
2,961,084	-				+1.8
2,961,084	-				+0.2
2,961,084	-				-1.3
2,961,084	-				-0.3
2,961,084	-				-0.4
2,961,084	-				-1.1
2,961,084	-				+2.3
2,961,084	-				-0.5
2,961,084	-				+0.8
2,961,084	-				+1.0
2,961,084	-				+1.3
2,961,085	+				+0.3
2,961,085	+				+2.0
2,961,085	+				+1.9
2,961,085	+				+0.6
2,961,085	+				-1.3
2,961,086	-				-0.4
2,961,086	-				+1.0
2,961,105	-				+0.4
2,961,124	+				-0.5
2,961,125	-				-0.9
2,961,177	-		HGI48_RS13525	0.18	-1.7
2,961,177	-		HGI48_RS13525	0.18	-0.7
2,961,177	-		HGI48_RS13525	0.18	-1.6
2,961,205	-		HGI48_RS13525	0.24	+1.2
2,961,205	-		HGI48_RS13525	0.24	+0.7
2,961,205	-		HGI48_RS13525	0.24	+1.4
2,961,263	+		HGI48_RS13525	0.38	+1.3
2,961,263	+		HGI48_RS13525	0.38	+0.8
2,961,289	+				+0.3
2,961,289	+		HGI48_RS13525	0.44	-2.5
2,961,290	-		HGI48_RS13525	0.45	+0.5
2,961,545	+				+1.1
2,961,555	+				+1.0
2,961,555	+				-0.4
2,961,593	-				+0.5
2,961,598	+				+1.3
2,961,598	+				-0.1
2,961,598	+				+0.9
2,961,599	-				+0.7
2,961,612	-				-0.7
2,961,612	-				+0.5
2,961,612	-				+1.5
2,961,615	+				-2.0
2,961,615	+				-1.2
2,961,616	-				+1.8
2,961,623	+				+1.1
2,961,624	-				-1.0
2,961,629	+				-0.6
2,961,630	-				+2.3
2,961,630	-				-1.6
2,961,630	-				+0.3
2,961,637	+				-0.7
2,961,638	-				+1.3
2,961,638	-				-0.0
2,961,638	-				+0.9
2,961,644	-				+0.8