Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13505

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,956,940	+				+0.5
2,956,940	+				+0.7
2,956,940	+				+0.3
2,956,940	+				+0.2
2,956,940	+				+1.3
2,956,940	+				+1.4
2,956,941	-				+0.3
2,956,941	-				-1.0
2,956,941	-				+0.6
2,956,941	-				-0.0
2,956,941	-				+0.4
2,956,990	-				+0.4
2,957,030	+				+0.5
2,957,030	+				+1.4
2,957,038	+				-0.9
2,957,038	+				+0.7
2,957,039	-				+0.6
2,957,090	-				+1.5
2,957,102	+				+1.0
2,957,103	-				-0.4
2,957,103	-				+2.3
2,957,106	+				-0.5
2,957,106	+				+0.6
2,957,106	+				+0.3
2,957,107	-				-2.1
2,957,130	+				+0.0
2,957,131	-				-0.7
2,957,180	-				-0.9
2,957,193	+				-1.4
2,957,194	-				-1.7
2,957,300	-		HGI48_RS13500	0.22	+4.2
2,957,300	-		HGI48_RS13500	0.22	-1.7
2,957,300	-		HGI48_RS13500	0.22	+0.1
2,957,337	+		HGI48_RS13500	0.27	+0.8
2,957,337	+		HGI48_RS13500	0.27	+0.9
2,957,338	-		HGI48_RS13500	0.27	+0.5
2,957,383	+		HGI48_RS13500	0.32	-1.9
2,957,383	+		HGI48_RS13500	0.32	+0.8
2,957,383	+		HGI48_RS13500	0.32	+0.7
2,957,383	+		HGI48_RS13500	0.32	+0.3
2,957,383	+		HGI48_RS13500	0.32	+0.3
2,957,384	-		HGI48_RS13500	0.33	-1.9
2,957,384	-		HGI48_RS13500	0.33	+0.3
2,957,384	-		HGI48_RS13500	0.33	+1.1
2,957,392	+		HGI48_RS13500	0.34	-0.5
2,957,392	+		HGI48_RS13500	0.34	+1.3
2,957,393	-		HGI48_RS13500	0.34	-0.4
2,957,571	+		HGI48_RS13500	0.56	+0.7
2,957,571	+		HGI48_RS13500	0.56	+1.0
2,957,571	+		HGI48_RS13500	0.56	+0.8
2,957,572	-		HGI48_RS13500	0.57	+0.3
2,957,572	-		HGI48_RS13500	0.57	+0.3
2,957,642	-		HGI48_RS13500	0.66	+0.6
2,957,668	+		HGI48_RS13500	0.69	+0.6
2,957,775	+		HGI48_RS13500	0.83	-0.0
2,957,776	-		HGI48_RS13500	0.83	+0.5
2,957,776	-		HGI48_RS13500	0.83	+0.4
2,957,792	+		HGI48_RS13500	0.85	+0.2
2,957,809	+		HGI48_RS13500	0.87	-0.4
2,957,810	-		HGI48_RS13500	0.87	+0.2
2,957,939	+				-0.7
2,957,939	+				-1.0
2,957,939	+				-0.1
2,957,939	+				-0.3
2,957,939	+				+0.6
2,957,940	-				-0.1
2,957,940	-				-0.0
2,957,953	+				+0.7
2,957,953	+				-0.1
2,957,953	+				-0.7
2,957,954	-				-0.1
2,957,954	-				-0.0
2,957,954	-				+0.2
2,957,962	-				+0.6
2,957,973	+				+0.8
2,957,973	+				+0.7
2,957,974	-				+0.4
2,957,976	+				+0.4
2,957,976	+				+0.3
2,958,067	-		HGI48_RS13505	0.17	+1.6
2,958,116	-		HGI48_RS13505	0.24	-0.9
2,958,118	+				+2.3
2,958,382	-				+0.3
2,958,384	+		HGI48_RS13505	0.59	-1.0
2,958,384	+		HGI48_RS13505	0.59	+0.4
2,958,385	-		HGI48_RS13505	0.59	+0.3
2,958,398	+		HGI48_RS13505	0.61	+2.0
2,958,398	+		HGI48_RS13505	0.61	+1.1
2,958,398	+		HGI48_RS13505	0.61	+0.7
2,958,398	+		HGI48_RS13505	0.61	-0.7
2,958,398	+		HGI48_RS13505	0.61	+0.7
2,958,398	+		HGI48_RS13505	0.61	-1.3
2,958,399	-		HGI48_RS13505	0.61	+1.4
2,958,399	-		HGI48_RS13505	0.61	+0.3
2,958,520	+		HGI48_RS13505	0.77	-0.9
2,958,521	-				+1.9
2,958,532	-		HGI48_RS13505	0.79	+0.3
2,958,532	-		HGI48_RS13505	0.79	+0.8
2,958,630	+				+0.9
2,958,631	-				+0.8
2,958,676	-				-0.7
2,958,676	-				+0.9
2,958,677	+				+1.7
2,958,677	+				-0.7
2,958,677	+				-1.7
2,958,677	+				+1.5
2,958,677	+				-0.0
2,958,677	+				+0.5
2,958,678	-				+2.9
2,958,678	-				+0.6
2,958,678	-				+0.1
2,958,678	-				+0.3
2,958,678	-				+0.3
2,958,678	-				-0.0
2,958,681	+				+0.2
2,958,681	+				+0.7
2,958,682	-				-0.3
2,958,682	-				+1.1
2,958,682	-				+0.3
2,958,682	-				+0.6
2,958,712	+				+0.6
2,958,712	+				+1.4
2,958,712	+				-0.1
2,958,713	-				+0.3
2,958,713	-				+0.4
2,958,713	-				-0.1
2,958,716	+				+1.9
2,958,716	+				-2.0
2,958,782	+				+0.8
2,958,782	+				+0.9
2,958,786	+				-0.6
2,958,786	+				+1.3
2,958,786	+				+0.3
2,958,786	+				+0.7
2,958,787	-				+0.6
2,958,787	-				+1.4
2,958,787	-				-0.3
2,958,819	+				+0.1
2,958,892	+		HGI48_RS13510	0.15	+1.2
2,958,892	+		HGI48_RS13510	0.15	+0.1
2,958,934	-		HGI48_RS13510	0.18	-0.1
2,959,016	+		HGI48_RS13510	0.25	+0.6
2,959,017	-		HGI48_RS13510	0.25	+1.8
2,959,050	+		HGI48_RS13510	0.28	+1.5
2,959,050	+				-0.3
2,959,050	+		HGI48_RS13510	0.28	+0.8
2,959,050	+		HGI48_RS13510	0.28	+0.8
2,959,050	+		HGI48_RS13510	0.28	-1.3
2,959,050	+		HGI48_RS13510	0.28	+0.7
2,959,050	+		HGI48_RS13510	0.28	-0.3
2,959,051	-		HGI48_RS13510	0.28	-0.8
2,959,051	-		HGI48_RS13510	0.28	+0.1
2,959,051	-				+0.3
2,959,051	-		HGI48_RS13510	0.28	+0.1
2,959,051	-		HGI48_RS13510	0.28	-0.5
2,959,051	-		HGI48_RS13510	0.28	+1.3
2,959,051	-		HGI48_RS13510	0.28	+0.5
2,959,051	-		HGI48_RS13510	0.28	-1.3
2,959,051	-		HGI48_RS13510	0.28	-0.1
2,959,051	-		HGI48_RS13510	0.28	+0.7
2,959,052	+		HGI48_RS13510	0.28	-2.0
2,959,076	+		HGI48_RS13510	0.30	+0.3
2,959,076	+		HGI48_RS13510	0.30	+0.1
2,959,077	-		HGI48_RS13510	0.30	+0.8
2,959,149	+				+0.3
2,959,149	+		HGI48_RS13510	0.36	+0.5
2,959,150	-		HGI48_RS13510	0.36	-1.0
2,959,186	-		HGI48_RS13510	0.39	+1.4
2,959,194	+		HGI48_RS13510	0.40	-1.8
2,959,209	+		HGI48_RS13510	0.41	+0.3
2,959,209	+		HGI48_RS13510	0.41	+1.3
2,959,227	+				+1.0
2,959,289	+		HGI48_RS13510	0.48	+0.6
2,959,289	+		HGI48_RS13510	0.48	+1.4
2,959,290	-		HGI48_RS13510	0.48	+0.5
2,959,290	-		HGI48_RS13510	0.48	+0.3
2,959,325	+		HGI48_RS13510	0.51	-0.8
2,959,326	-		HGI48_RS13510	0.51	+0.2
2,959,338	+		HGI48_RS13510	0.52	-0.2
2,959,339	-		HGI48_RS13510	0.52	+0.5
2,959,356	+		HGI48_RS13510	0.53	-0.9
2,959,356	+		HGI48_RS13510	0.53	+1.0
2,959,357	-		HGI48_RS13510	0.54	+0.6
2,959,361	+		HGI48_RS13510	0.54	+0.2
2,959,361	+		HGI48_RS13510	0.54	+1.1
2,959,361	+		HGI48_RS13510	0.54	+1.0
2,959,361	+		HGI48_RS13510	0.54	+1.9
2,959,361	+				+0.3
2,959,361	+		HGI48_RS13510	0.54	+1.5
2,959,362	-		HGI48_RS13510	0.54	-0.6
2,959,362	-		HGI48_RS13510	0.54	+1.4
2,959,362	-		HGI48_RS13510	0.54	+0.5
2,959,362	-		HGI48_RS13510	0.54	+0.5
2,959,362	-		HGI48_RS13510	0.54	+0.2
2,959,362	-		HGI48_RS13510	0.54	+0.7
2,959,371	+		HGI48_RS13510	0.55	+2.2
2,959,371	+		HGI48_RS13510	0.55	-0.2
2,959,371	+				+1.5
2,959,372	-		HGI48_RS13510	0.55	-0.5
2,959,372	-		HGI48_RS13510	0.55	+1.4
2,959,380	+		HGI48_RS13510	0.55	-0.9
2,959,381	-		HGI48_RS13510	0.56	-0.5
2,959,381	-		HGI48_RS13510	0.56	+0.3
2,959,382	+		HGI48_RS13510	0.56	+0.9
2,959,382	+		HGI48_RS13510	0.56	+1.5
2,959,382	+		HGI48_RS13510	0.56	-0.7
2,959,382	+				+0.9
2,959,383	-		HGI48_RS13510	0.56	+0.3
2,959,383	-		HGI48_RS13510	0.56	+0.6
2,959,392	+		HGI48_RS13510	0.56	-0.1
2,959,392	+		HGI48_RS13510	0.56	+1.3
2,959,392	+				+0.7
2,959,393	-				+1.6
2,959,393	-		HGI48_RS13510	0.56	-0.7
2,959,584	+		HGI48_RS13510	0.72	-1.8
2,959,587	+		HGI48_RS13510	0.73	+0.9
2,959,587	+		HGI48_RS13510	0.73	-1.3
2,959,588	-		HGI48_RS13510	0.73	-0.5
2,959,588	-		HGI48_RS13510	0.73	+0.6
2,959,591	+				-0.3
2,959,591	+		HGI48_RS13510	0.73	-0.1
2,959,591	+		HGI48_RS13510	0.73	+2.7
2,959,592	-		HGI48_RS13510	0.73	+0.7
2,959,592	-		HGI48_RS13510	0.73	+0.3
2,959,592	-		HGI48_RS13510	0.73	+1.6
2,959,592	-		HGI48_RS13510	0.73	+0.6
2,959,635	-		HGI48_RS13510	0.77	+1.6
2,959,653	+		HGI48_RS13510	0.78	+0.9