Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,949,352	+		HGI48_RS13460	0.25	+0.9
2,949,352	+				+0.3
2,949,353	-		HGI48_RS13460	0.25	+0.7
2,949,363	+		HGI48_RS13460	0.27	+1.6
2,949,364	-		HGI48_RS13460	0.27	-0.7
2,949,364	-		HGI48_RS13460	0.27	+0.1
2,949,364	-		HGI48_RS13460	0.27	+0.9
2,949,392	-				+2.2
2,949,426	+		HGI48_RS13460	0.35	+0.6
2,949,469	+		HGI48_RS13460	0.40	+2.1
2,949,469	+		HGI48_RS13460	0.40	+1.1
2,949,469	+		HGI48_RS13460	0.40	+0.3
2,949,469	+		HGI48_RS13460	0.40	+0.7
2,949,469	+		HGI48_RS13460	0.40	+0.2
2,949,469	+				+3.3
2,949,470	-		HGI48_RS13460	0.41	+0.3
2,949,514	+				+1.3
2,949,514	+		HGI48_RS13460	0.46	+1.1
2,949,515	-		HGI48_RS13460	0.46	-2.0
2,949,515	-		HGI48_RS13460	0.46	+0.5
2,949,515	-		HGI48_RS13460	0.46	-0.3
2,949,515	-		HGI48_RS13460	0.46	+0.3
2,949,518	+				-0.7
2,949,518	+		HGI48_RS13460	0.47	+0.8
2,949,518	+		HGI48_RS13460	0.47	-0.4
2,949,518	+		HGI48_RS13460	0.47	+0.8
2,949,518	+		HGI48_RS13460	0.47	+1.3
2,949,519	-		HGI48_RS13460	0.47	+0.9
2,949,519	-		HGI48_RS13460	0.47	-0.1
2,949,519	-		HGI48_RS13460	0.47	+1.1
2,949,519	-		HGI48_RS13460	0.47	+0.4
2,949,519	-				+4.0
2,949,519	-		HGI48_RS13460	0.47	-0.9
2,949,519	-				+2.6
2,949,519	-		HGI48_RS13460	0.47	-0.1
2,949,551	-		HGI48_RS13460	0.51	+1.2
2,949,560	-		HGI48_RS13460	0.52	+0.4
2,949,639	+				+0.3
2,949,639	+		HGI48_RS13460	0.62	-0.3
2,949,639	+		HGI48_RS13460	0.62	+0.1
2,949,640	-		HGI48_RS13460	0.62	-0.7
2,949,640	-		HGI48_RS13460	0.62	+1.0
2,949,644	-		HGI48_RS13460	0.63	-0.1
2,949,700	-		HGI48_RS13460	0.70	-0.1
2,949,705	+		HGI48_RS13460	0.71	+0.5
2,949,706	-				+0.3
2,949,706	-		HGI48_RS13460	0.71	-0.4
2,949,713	+		HGI48_RS13460	0.72	-1.7
2,949,713	+		HGI48_RS13460	0.72	-1.4
2,949,713	+		HGI48_RS13460	0.72	-1.1
2,949,713	+		HGI48_RS13460	0.72	-1.7
2,949,713	+		HGI48_RS13460	0.72	-1.2
2,949,713	+		HGI48_RS13460	0.72	+0.8
2,949,713	+		HGI48_RS13460	0.72	+0.3
2,949,713	+		HGI48_RS13460	0.72	+0.9
2,949,713	+		HGI48_RS13460	0.72	+1.0
2,949,713	+		HGI48_RS13460	0.72	-1.0
2,949,713	+		HGI48_RS13460	0.72	+1.4
2,949,713	+		HGI48_RS13460	0.72	+0.3
2,949,713	+		HGI48_RS13460	0.72	+1.3
2,949,713	+		HGI48_RS13460	0.72	+1.3
2,949,713	+		HGI48_RS13460	0.72	+1.2
2,949,713	+		HGI48_RS13460	0.72	-0.1
2,949,713	+		HGI48_RS13460	0.72	-0.2
2,949,713	+		HGI48_RS13460	0.72	-0.5
2,949,713	+		HGI48_RS13460	0.72	+1.0
2,949,713	+		HGI48_RS13460	0.72	-0.3
2,949,713	+		HGI48_RS13460	0.72	+0.3
2,949,714	-		HGI48_RS13460	0.72	+0.3
2,949,714	-				-0.3
2,949,714	-		HGI48_RS13460	0.72	+0.6
2,949,714	-		HGI48_RS13460	0.72	-1.5
2,949,714	-		HGI48_RS13460	0.72	+2.2
2,949,714	-		HGI48_RS13460	0.72	+0.2
2,949,714	-		HGI48_RS13460	0.72	+0.6
2,949,714	-		HGI48_RS13460	0.72	+0.1
2,949,714	-		HGI48_RS13460	0.72	-0.2
2,949,714	-		HGI48_RS13460	0.72	+0.7
2,949,714	-		HGI48_RS13460	0.72	+0.1
2,949,714	-		HGI48_RS13460	0.72	-1.1
2,949,714	-		HGI48_RS13460	0.72	+0.0
2,949,714	-		HGI48_RS13460	0.72	+1.4
2,949,714	-		HGI48_RS13460	0.72	+0.3
2,949,755	-		HGI48_RS13460	0.77	+0.6
2,949,792	+		HGI48_RS13460	0.82	+1.0
2,949,801	+		HGI48_RS13460	0.83	-0.5
2,949,802	-				-1.3
2,949,818	-		HGI48_RS13460	0.85	-1.0
2,949,923	+				-2.5
2,949,923	+				-1.1
2,949,924	-				+0.2
2,949,924	-				+1.9
2,949,924	-				+2.3
2,949,925	+				+2.0
2,949,925	+				+0.8
2,949,925	+				+0.3
2,949,925	+				+0.8
2,949,925	+				+1.6
2,949,925	+				+0.6
2,949,926	-				-1.1
2,949,926	-				+2.6
2,949,926	-				+0.6
2,949,926	-				+0.8
2,949,926	-				-1.7
2,949,926	-				+0.6
2,949,926	-				+1.7
2,949,929	+				-0.9
2,949,929	+				+0.3
2,949,929	+				-1.3
2,949,929	+				-0.2
2,949,929	+				-0.7
2,949,929	+				-1.7
2,949,930	-				+0.6
2,949,930	-				+0.1
2,949,930	-				+0.0
2,949,930	-				+0.3
2,949,930	-				+1.6
2,949,966	+				-1.3
2,949,966	+				-0.5
2,949,966	+				+0.7
2,949,967	-				-1.5
2,949,967	-				-0.7
2,949,967	-				-0.3
2,949,967	-				+0.3
2,949,992	+				-1.3
2,949,993	-				+1.6
2,949,998	-		HGI48_RS13465	0.11	+1.3
2,950,013	+		HGI48_RS13465	0.17	+0.3
2,950,013	+		HGI48_RS13465	0.17	+0.4
2,950,014	-		HGI48_RS13465	0.17	+0.6
2,950,139	+		HGI48_RS13465	0.64	-1.3
2,950,180	-		HGI48_RS13465	0.79	-0.0
2,950,192	+		HGI48_RS13465	0.83	+0.9
2,950,192	+		HGI48_RS13465	0.83	+0.0
2,950,192	+		HGI48_RS13465	0.83	+0.7
2,950,192	+		HGI48_RS13465	0.83	-0.9
2,950,192	+		HGI48_RS13465	0.83	+0.8
2,950,192	+		HGI48_RS13465	0.83	+1.5
2,950,192	+		HGI48_RS13465	0.83	-0.1
2,950,192	+		HGI48_RS13465	0.83	+2.1
2,950,192	+		HGI48_RS13465	0.83	+0.9
2,950,192	+		HGI48_RS13465	0.83	+1.4
2,950,193	-				+0.7
2,950,193	-		HGI48_RS13465	0.84	-1.3
2,950,193	-		HGI48_RS13465	0.84	+0.3
2,950,193	-		HGI48_RS13465	0.84	+1.8
2,950,194	+		HGI48_RS13465	0.84	-0.1
2,950,194	+		HGI48_RS13465	0.84	-0.5
2,950,194	+		HGI48_RS13465	0.84	+0.9
2,950,194	+		HGI48_RS13465	0.84	+0.0
2,950,194	+				+1.0
2,950,195	-		HGI48_RS13465	0.84	-0.3
2,950,195	-		HGI48_RS13465	0.84	+1.3
2,950,195	-		HGI48_RS13465	0.84	+0.6
2,950,195	-		HGI48_RS13465	0.84	-0.1
2,950,195	-		HGI48_RS13465	0.84	+1.2
2,950,195	-				+2.5
2,950,195	-		HGI48_RS13465	0.84	+1.2
2,950,195	-				+0.3
2,950,200	+		HGI48_RS13465	0.86	-0.3
2,950,201	-		HGI48_RS13465	0.87	-0.0
2,950,201	-		HGI48_RS13465	0.87	-1.7
2,950,201	-		HGI48_RS13465	0.87	+1.4
2,950,201	-		HGI48_RS13465	0.87	+0.5
2,950,235	-				+1.3
2,950,235	-				-1.5
2,950,238	+				-0.3
2,950,238	+				+0.3
2,950,238	+				-0.4
2,950,238	+				+0.3
2,950,238	+				+0.3
2,950,239	-				-0.3
2,950,239	-				+0.7
2,950,239	-				+2.0
2,950,239	-				-2.7
2,950,254	-				+2.4
2,950,317	-				-1.7
2,950,319	+		HGI48_RS13470	0.10	+1.6
2,950,319	+		HGI48_RS13470	0.10	+0.5
2,950,319	+		HGI48_RS13470	0.10	+1.2
2,950,320	-				+0.7
2,950,320	-		HGI48_RS13470	0.10	+1.1
2,950,337	+		HGI48_RS13470	0.13	+0.0
2,950,349	+		HGI48_RS13470	0.14	+0.9
2,950,349	+		HGI48_RS13470	0.14	+1.4
2,950,349	+		HGI48_RS13470	0.14	+0.4
2,950,349	+				+1.3
2,950,349	+		HGI48_RS13470	0.14	+0.5
2,950,349	+		HGI48_RS13470	0.14	-0.3
2,950,350	-		HGI48_RS13470	0.14	+1.1
2,950,350	-		HGI48_RS13470	0.14	+0.7
2,950,350	-		HGI48_RS13470	0.14	+0.6
2,950,471	+		HGI48_RS13470	0.30	+0.3
2,950,471	+		HGI48_RS13470	0.30	+0.4
2,950,472	-		HGI48_RS13470	0.30	+0.0
2,950,472	-		HGI48_RS13470	0.30	+2.1
2,950,477	+		HGI48_RS13470	0.30	-2.3
2,950,478	-				+1.7
2,950,478	-		HGI48_RS13470	0.31	+0.0
2,950,483	+				+1.0
2,950,483	+		HGI48_RS13470	0.31	+1.0
2,950,483	+				-0.7
2,950,483	+		HGI48_RS13470	0.31	+0.3
2,950,483	+		HGI48_RS13470	0.31	+0.7
2,950,484	-		HGI48_RS13470	0.31	-2.7
2,950,484	-		HGI48_RS13470	0.31	+2.2
2,950,484	-		HGI48_RS13470	0.31	+0.6
2,950,484	-		HGI48_RS13470	0.31	+1.0
2,950,542	-		HGI48_RS13470	0.39	+1.8
2,950,572	-		HGI48_RS13470	0.43	+1.3
2,950,572	-				-1.3
2,950,572	-		HGI48_RS13470	0.43	+0.4
2,950,602	-		HGI48_RS13470	0.46	+2.0
2,950,669	+		HGI48_RS13470	0.55	-0.4
2,950,669	+		HGI48_RS13470	0.55	+0.4
2,950,669	+		HGI48_RS13470	0.55	-0.1
2,950,669	+		HGI48_RS13470	0.55	-1.3
2,950,669	+				-0.3
2,950,669	+		HGI48_RS13470	0.55	-0.4
2,950,669	+		HGI48_RS13470	0.55	+1.1
2,950,670	-		HGI48_RS13470	0.55	+0.9
2,950,670	-		HGI48_RS13470	0.55	+0.8
2,950,670	-		HGI48_RS13470	0.55	+0.3
2,950,670	-		HGI48_RS13470	0.55	+1.0
2,950,670	-		HGI48_RS13470	0.55	-0.5
2,950,670	-		HGI48_RS13470	0.55	+2.2
2,950,670	-		HGI48_RS13470	0.55	+1.2
2,950,670	-		HGI48_RS13470	0.55	+0.3
2,950,670	-		HGI48_RS13470	0.55	-1.3
2,950,679	-		HGI48_RS13470	0.56	-0.4
2,950,679	-				-0.3
2,950,736	+		HGI48_RS13470	0.63	-0.1
2,950,736	+		HGI48_RS13470	0.63	-2.0
2,950,741	+		HGI48_RS13470	0.64	+1.3
2,950,741	+		HGI48_RS13470	0.64	+1.8
2,950,741	+		HGI48_RS13470	0.64	-0.4
2,950,741	+		HGI48_RS13470	0.64	+0.7
2,950,741	+		HGI48_RS13470	0.64	+0.5
2,950,742	-		HGI48_RS13470	0.64	+0.3
2,950,742	-		HGI48_RS13470	0.64	+0.2
2,950,742	-		HGI48_RS13470	0.64	-0.7
2,950,742	-		HGI48_RS13470	0.64	-0.1
2,950,742	-		HGI48_RS13470	0.64	+0.8
2,950,742	-		HGI48_RS13470	0.64	+0.8
2,950,742	-		HGI48_RS13470	0.64	+2.1
2,950,742	-		HGI48_RS13470	0.64	-2.0
2,950,742	-		HGI48_RS13470	0.64	+0.6
2,950,745	+		HGI48_RS13470	0.65	+0.8
2,950,745	+		HGI48_RS13470	0.65	-0.9
2,950,745	+				+0.9
2,950,746	-		HGI48_RS13470	0.65	+1.6
2,950,746	-		HGI48_RS13470	0.65	+0.5
2,950,746	-		HGI48_RS13470	0.65	-0.4
2,950,774	+		HGI48_RS13470	0.68	+0.0
2,950,775	-				+1.3
2,950,816	+		HGI48_RS13470	0.74	-0.2
2,950,816	+		HGI48_RS13470	0.74	-0.3
2,950,817	-		HGI48_RS13470	0.74	+1.3
2,950,817	-				+1.3
2,950,849	+		HGI48_RS13470	0.78	+0.7
2,950,850	-		HGI48_RS13470	0.78	+0.4
2,950,850	-		HGI48_RS13470	0.78	-0.5
2,950,850	-		HGI48_RS13470	0.78	+0.7
2,950,919	+		HGI48_RS13470	0.87	-1.7
2,950,919	+		HGI48_RS13470	0.87	+0.5
2,950,919	+		HGI48_RS13470	0.87	-0.4
2,950,919	+		HGI48_RS13470	0.87	+0.1
2,950,919	+		HGI48_RS13470	0.87	+0.8
2,950,919	+		HGI48_RS13470	0.87	+0.7
2,950,920	-		HGI48_RS13470	0.87	+0.3
2,950,920	-		HGI48_RS13470	0.87	+1.4
2,950,953	+				+0.9
2,950,953	+				-0.1
2,950,954	-				-0.3
2,950,966	+				-0.3
2,951,000	-				-0.9
2,951,028	+				+0.1
2,951,028	+				+0.6
2,951,058	+				-0.5
2,951,058	+				+0.0
2,951,058	+				-0.5
2,951,058	+				-0.3
2,951,059	-				+2.7
2,951,100	+				-0.7
2,951,100	+				-0.0
2,951,101	-				-1.5
2,951,127	+				-1.0
2,951,127	+				-1.8
2,951,127	+				-0.1
2,951,128	-				-0.5
2,951,154	-				+0.3
2,951,154	-				+0.8
2,951,165	-				-1.7
2,951,205	+				+0.6
2,951,249	+				-0.3
2,951,249	+				+0.0
2,951,249	+				+0.1
2,951,249	+				-0.9
2,951,249	+				+0.4
2,951,249	+				+1.3
2,951,249	+				-2.9
2,951,250	-				+0.8
2,951,250	-				-2.0
2,951,250	-				-0.9
2,951,282	+				-0.1
2,951,282	+				+0.6
2,951,282	+				+0.9
2,951,282	+				+0.3
2,951,282	+				+0.3
2,951,283	-				+0.4
2,951,341	-		HGI48_RS13475	0.15	+1.0
2,951,358	+		HGI48_RS13475	0.17	-0.6
2,951,359	-		HGI48_RS13475	0.17	-0.5
2,951,368	-				-1.3
2,951,428	-		HGI48_RS13475	0.25	-0.4
2,951,428	-		HGI48_RS13475	0.25	+2.1
2,951,443	-				+0.9
2,951,487	+		HGI48_RS13475	0.31	+0.0
2,951,487	+				+1.9
2,951,487	+				+0.3
2,951,488	-		HGI48_RS13475	0.31	+0.9
2,951,557	-		HGI48_RS13475	0.39	-0.5
2,951,580	+		HGI48_RS13475	0.41	+1.3
2,951,581	-		HGI48_RS13475	0.41	-0.0
2,951,584	+				-1.3
2,951,584	+		HGI48_RS13475	0.42	+0.5
2,951,585	-		HGI48_RS13475	0.42	-0.3
2,951,663	+				+3.1
2,951,663	+		HGI48_RS13475	0.50	+0.3
2,951,663	+		HGI48_RS13475	0.50	+0.6
2,951,663	+		HGI48_RS13475	0.50	-0.1
2,951,663	+		HGI48_RS13475	0.50	+1.2
2,951,663	+		HGI48_RS13475	0.50	+0.6
2,951,663	+				+2.3
2,951,663	+		HGI48_RS13475	0.50	-0.5
2,951,663	+		HGI48_RS13475	0.50	+1.5
2,951,663	+		HGI48_RS13475	0.50	-0.5
2,951,663	+		HGI48_RS13475	0.50	-0.0
2,951,664	-		HGI48_RS13475	0.50	+1.3
2,951,688	+		HGI48_RS13475	0.53	-0.1
2,951,689	-		HGI48_RS13475	0.53	+1.0
2,951,689	-		HGI48_RS13475	0.53	+0.3
2,951,689	-		HGI48_RS13475	0.53	-1.3
2,951,715	-		HGI48_RS13475	0.56	+0.6
2,951,829	+		HGI48_RS13475	0.68	-0.3
2,951,842	+		HGI48_RS13475	0.69	-0.3
2,951,842	+				+1.3
2,951,842	+		HGI48_RS13475	0.69	-0.7
2,951,843	-		HGI48_RS13475	0.69	+0.6
2,951,878	+		HGI48_RS13475	0.73	+0.5
2,951,905	-		HGI48_RS13475	0.76	+0.3
2,951,911	-		HGI48_RS13475	0.77	+0.8
2,951,928	+		HGI48_RS13475	0.79	-0.4
2,951,941	-		HGI48_RS13475	0.80	+0.0
2,951,941	-		HGI48_RS13475	0.80	+0.8
2,951,941	-		HGI48_RS13475	0.80	-0.4
2,951,941	-		HGI48_RS13475	0.80	-0.4
2,951,941	-				+0.7
2,951,941	-				+1.9
2,951,942	+		HGI48_RS13475	0.80	+0.0