Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13455

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,947,761	-		HGI48_RS13445	0.44	+2.3
2,947,796	+		HGI48_RS13445	0.47	+0.9
2,947,796	+		HGI48_RS13445	0.47	-1.6
2,947,797	-		HGI48_RS13445	0.47	+1.5
2,947,797	-		HGI48_RS13445	0.47	-1.5
2,947,815	+		HGI48_RS13445	0.49	+1.4
2,947,835	+		HGI48_RS13445	0.51	+1.5
2,947,836	-		HGI48_RS13445	0.51	+0.3
2,947,836	-		HGI48_RS13445	0.51	-1.0
2,947,836	-				+2.5
2,947,839	+		HGI48_RS13445	0.51	+0.3
2,947,839	+		HGI48_RS13445	0.51	+0.5
2,947,840	-		HGI48_RS13445	0.51	+0.3
2,947,846	+		HGI48_RS13445	0.52	+1.1
2,947,846	+		HGI48_RS13445	0.52	+0.6
2,947,846	+		HGI48_RS13445	0.52	+1.1
2,947,846	+		HGI48_RS13445	0.52	-0.3
2,947,847	-		HGI48_RS13445	0.52	+1.2
2,947,847	-		HGI48_RS13445	0.52	+0.7
2,947,847	-		HGI48_RS13445	0.52	-0.5
2,947,847	-				+0.9
2,947,857	+		HGI48_RS13445	0.53	+0.6
2,947,857	+		HGI48_RS13445	0.53	+1.3
2,947,857	+		HGI48_RS13445	0.53	+0.9
2,947,857	+		HGI48_RS13445	0.53	+1.3
2,947,857	+		HGI48_RS13445	0.53	-0.8
2,947,857	+		HGI48_RS13445	0.53	-0.1
2,947,858	-		HGI48_RS13445	0.53	+2.3
2,947,858	-		HGI48_RS13445	0.53	+0.0
2,947,858	-		HGI48_RS13445	0.53	-2.3
2,947,913	+		HGI48_RS13445	0.59	+1.1
2,947,970	+		HGI48_RS13445	0.64	+0.7
2,947,970	+		HGI48_RS13445	0.64	-0.8
2,947,971	-		HGI48_RS13445	0.64	-0.5
2,947,971	-		HGI48_RS13445	0.64	-0.3
2,947,971	-		HGI48_RS13445	0.64	+0.1
2,947,971	-		HGI48_RS13445	0.64	-0.0
2,947,976	+		HGI48_RS13445	0.65	+0.5
2,947,976	+		HGI48_RS13445	0.65	+2.1
2,947,977	-		HGI48_RS13445	0.65	+1.6
2,947,993	+		HGI48_RS13445	0.66	+1.0
2,947,993	+		HGI48_RS13445	0.66	-0.3
2,947,994	-		HGI48_RS13445	0.67	+0.1
2,947,994	-		HGI48_RS13445	0.67	+1.5
2,947,994	-		HGI48_RS13445	0.67	+0.7
2,948,083	+				-0.3
2,948,084	-		HGI48_RS13445	0.75	+1.2
2,948,084	-		HGI48_RS13445	0.75	-0.4
2,948,084	-		HGI48_RS13445	0.75	+0.3
2,948,168	+		HGI48_RS13445	0.84	-0.5
2,948,169	-		HGI48_RS13445	0.84	+0.9
2,948,169	-		HGI48_RS13445	0.84	+1.3
2,948,184	-		HGI48_RS13445	0.85	+0.8
2,948,184	-		HGI48_RS13445	0.85	-1.8
2,948,244	-				-0.7
2,948,248	+				+1.5
2,948,248	+				+1.5
2,948,248	+				+0.1
2,948,248	+				+1.0
2,948,249	-				+0.4
2,948,249	-				+1.6
2,948,249	-				+0.2
2,948,259	+				+0.1
2,948,259	+				-0.8
2,948,260	-				+1.3
2,948,286	-				+0.7
2,948,292	-				+0.7
2,948,296	+				-0.4
2,948,297	-				+0.0
2,948,297	-				+0.0
2,948,391	+		HGI48_RS13450	0.16	+1.0
2,948,392	-				+1.3
2,948,439	+		HGI48_RS13450	0.27	-0.4
2,948,439	+		HGI48_RS13450	0.27	-0.5
2,948,439	+		HGI48_RS13450	0.27	+1.1
2,948,439	+		HGI48_RS13450	0.27	+0.8
2,948,439	+		HGI48_RS13450	0.27	-1.3
2,948,439	+		HGI48_RS13450	0.27	+0.3
2,948,440	-		HGI48_RS13450	0.27	-0.7
2,948,440	-		HGI48_RS13450	0.27	+0.9
2,948,440	-		HGI48_RS13450	0.27	-2.7
2,948,440	-		HGI48_RS13450	0.27	+1.5
2,948,440	-		HGI48_RS13450	0.27	+2.3
2,948,638	+		HGI48_RS13450	0.75	-2.0
2,948,680	+		HGI48_RS13450	0.85	+0.2
2,948,680	+		HGI48_RS13450	0.85	+0.1
2,948,681	-		HGI48_RS13450	0.85	+1.9
2,948,681	-		HGI48_RS13450	0.85	-0.7
2,948,681	-		HGI48_RS13450	0.85	+0.5
2,948,691	+				+2.5
2,948,692	-				+1.7
2,948,692	-		HGI48_RS13450	0.88	+1.6
2,948,695	-		HGI48_RS13450	0.88	+0.5
2,948,703	+				-0.0
2,948,703	+				-0.0
2,948,703	+				+1.2
2,948,703	+				+0.8
2,948,704	-				+0.3
2,948,704	-				-0.3
2,948,704	-				+1.3
2,948,704	-				+0.5
2,948,704	-				+0.8
2,948,706	+				-0.7
2,948,707	-				-0.0
2,948,721	+				+0.3
2,948,721	+				+0.5
2,948,721	+				+0.6
2,948,722	-				-2.5
2,948,722	-				-0.4
2,948,722	-				-0.5
2,948,732	+				+0.1
2,948,860	+		HGI48_RS13455	0.28	-0.3
2,948,860	+		HGI48_RS13455	0.28	+0.8
2,948,860	+		HGI48_RS13455	0.28	-0.7
2,948,860	+		HGI48_RS13455	0.28	-0.7
2,948,860	+		HGI48_RS13455	0.28	+0.4
2,948,860	+		HGI48_RS13455	0.28	-0.5
2,948,861	-		HGI48_RS13455	0.29	+0.9
2,948,861	-				+0.7
2,948,861	-		HGI48_RS13455	0.29	+0.5
2,948,861	-		HGI48_RS13455	0.29	-0.1
2,948,861	-		HGI48_RS13455	0.29	-0.2
2,948,861	-		HGI48_RS13455	0.29	+0.8
2,948,899	+				-1.3
2,948,900	-		HGI48_RS13455	0.38	-0.0
2,948,900	-		HGI48_RS13455	0.38	+0.8
2,948,927	+		HGI48_RS13455	0.44	+0.5
2,948,927	+				+2.8
2,948,927	+		HGI48_RS13455	0.44	+0.6
2,948,975	+				+1.5
2,948,975	+		HGI48_RS13455	0.56	+0.9
2,948,976	-				+1.5
2,948,999	+		HGI48_RS13455	0.62	+0.8
2,948,999	+		HGI48_RS13455	0.62	-1.7
2,949,000	-		HGI48_RS13455	0.62	-2.7
2,949,010	+		HGI48_RS13455	0.64	+0.5
2,949,010	+		HGI48_RS13455	0.64	+0.5
2,949,010	+		HGI48_RS13455	0.64	+0.6
2,949,010	+		HGI48_RS13455	0.64	+0.2
2,949,010	+		HGI48_RS13455	0.64	+0.6
2,949,011	-		HGI48_RS13455	0.65	-0.4
2,949,011	-		HGI48_RS13455	0.65	+1.0
2,949,011	-		HGI48_RS13455	0.65	+0.5
2,949,011	-		HGI48_RS13455	0.65	+1.9
2,949,011	-				-0.7
2,949,011	-		HGI48_RS13455	0.65	+1.0
2,949,047	+		HGI48_RS13455	0.73	+1.2
2,949,204	+				+0.7
2,949,204	+				+0.3
2,949,204	+				-0.3
2,949,204	+				-1.3
2,949,204	+				+0.7
2,949,205	-				-0.5
2,949,205	-				+1.5
2,949,205	-				+0.6
2,949,205	-				+1.2
2,949,223	+				-0.9
2,949,223	+				+0.6
2,949,223	+				-0.1
2,949,224	-				+1.0
2,949,224	-				+1.0
2,949,224	-				-1.3
2,949,224	-				+1.5
2,949,224	-				+0.7
2,949,224	-				+1.2
2,949,352	+		HGI48_RS13460	0.25	+0.9
2,949,352	+				+0.3
2,949,353	-		HGI48_RS13460	0.25	+0.7
2,949,363	+		HGI48_RS13460	0.27	+1.6
2,949,364	-		HGI48_RS13460	0.27	-0.7
2,949,364	-		HGI48_RS13460	0.27	+0.1
2,949,364	-		HGI48_RS13460	0.27	+0.9
2,949,392	-				+2.2
2,949,426	+		HGI48_RS13460	0.35	+0.6
2,949,469	+		HGI48_RS13460	0.40	+2.1
2,949,469	+		HGI48_RS13460	0.40	+1.1
2,949,469	+		HGI48_RS13460	0.40	+0.3
2,949,469	+		HGI48_RS13460	0.40	+0.7
2,949,469	+		HGI48_RS13460	0.40	+0.2
2,949,469	+				+3.3
2,949,470	-		HGI48_RS13460	0.41	+0.3
2,949,514	+				+1.3
2,949,514	+		HGI48_RS13460	0.46	+1.1
2,949,515	-		HGI48_RS13460	0.46	-2.0
2,949,515	-		HGI48_RS13460	0.46	+0.5
2,949,515	-		HGI48_RS13460	0.46	-0.3
2,949,515	-		HGI48_RS13460	0.46	+0.3
2,949,518	+				-0.7
2,949,518	+		HGI48_RS13460	0.47	+0.8
2,949,518	+		HGI48_RS13460	0.47	-0.4
2,949,518	+		HGI48_RS13460	0.47	+0.8
2,949,518	+		HGI48_RS13460	0.47	+1.3
2,949,519	-		HGI48_RS13460	0.47	+0.9
2,949,519	-		HGI48_RS13460	0.47	-0.1
2,949,519	-		HGI48_RS13460	0.47	+1.1
2,949,519	-		HGI48_RS13460	0.47	+0.4
2,949,519	-				+4.0
2,949,519	-		HGI48_RS13460	0.47	-0.9
2,949,519	-				+2.6
2,949,519	-		HGI48_RS13460	0.47	-0.1
2,949,551	-		HGI48_RS13460	0.51	+1.2
2,949,560	-		HGI48_RS13460	0.52	+0.4
2,949,639	+				+0.3
2,949,639	+		HGI48_RS13460	0.62	-0.3
2,949,639	+		HGI48_RS13460	0.62	+0.1
2,949,640	-		HGI48_RS13460	0.62	-0.7
2,949,640	-		HGI48_RS13460	0.62	+1.0
2,949,644	-		HGI48_RS13460	0.63	-0.1
2,949,700	-		HGI48_RS13460	0.70	-0.1
2,949,705	+		HGI48_RS13460	0.71	+0.5
2,949,706	-				+0.3
2,949,706	-		HGI48_RS13460	0.71	-0.4
2,949,713	+		HGI48_RS13460	0.72	-1.7
2,949,713	+		HGI48_RS13460	0.72	-1.4
2,949,713	+		HGI48_RS13460	0.72	-1.1
2,949,713	+		HGI48_RS13460	0.72	-1.7
2,949,713	+		HGI48_RS13460	0.72	-1.2
2,949,713	+		HGI48_RS13460	0.72	+0.8
2,949,713	+		HGI48_RS13460	0.72	+0.3
2,949,713	+		HGI48_RS13460	0.72	+0.9
2,949,713	+		HGI48_RS13460	0.72	+1.0
2,949,713	+		HGI48_RS13460	0.72	-1.0
2,949,713	+		HGI48_RS13460	0.72	+1.4
2,949,713	+		HGI48_RS13460	0.72	+0.3
2,949,713	+		HGI48_RS13460	0.72	+1.3
2,949,713	+		HGI48_RS13460	0.72	+1.3
2,949,713	+		HGI48_RS13460	0.72	+1.2
2,949,713	+		HGI48_RS13460	0.72	-0.1
2,949,713	+		HGI48_RS13460	0.72	-0.2
2,949,713	+		HGI48_RS13460	0.72	-0.5
2,949,713	+		HGI48_RS13460	0.72	+1.0
2,949,713	+		HGI48_RS13460	0.72	-0.3
2,949,713	+		HGI48_RS13460	0.72	+0.3
2,949,714	-		HGI48_RS13460	0.72	+0.3
2,949,714	-				-0.3
2,949,714	-		HGI48_RS13460	0.72	+0.6
2,949,714	-		HGI48_RS13460	0.72	-1.5
2,949,714	-		HGI48_RS13460	0.72	+2.2
2,949,714	-		HGI48_RS13460	0.72	+0.2
2,949,714	-		HGI48_RS13460	0.72	+0.6
2,949,714	-		HGI48_RS13460	0.72	+0.1
2,949,714	-		HGI48_RS13460	0.72	-0.2
2,949,714	-		HGI48_RS13460	0.72	+0.7
2,949,714	-		HGI48_RS13460	0.72	+0.1
2,949,714	-		HGI48_RS13460	0.72	-1.1
2,949,714	-		HGI48_RS13460	0.72	+0.0
2,949,714	-		HGI48_RS13460	0.72	+1.4
2,949,714	-		HGI48_RS13460	0.72	+0.3
2,949,755	-		HGI48_RS13460	0.77	+0.6
2,949,792	+		HGI48_RS13460	0.82	+1.0
2,949,801	+		HGI48_RS13460	0.83	-0.5
2,949,802	-				-1.3
2,949,818	-		HGI48_RS13460	0.85	-1.0
2,949,923	+				-2.5
2,949,923	+				-1.1
2,949,924	-				+0.2
2,949,924	-				+1.9
2,949,924	-				+2.3
2,949,925	+				+2.0
2,949,925	+				+0.8
2,949,925	+				+0.3
2,949,925	+				+0.8
2,949,925	+				+1.6
2,949,925	+				+0.6
2,949,926	-				-1.1
2,949,926	-				+2.6
2,949,926	-				+0.6
2,949,926	-				+0.8
2,949,926	-				-1.7
2,949,926	-				+0.6
2,949,926	-				+1.7
2,949,929	+				-0.9
2,949,929	+				+0.3
2,949,929	+				-1.3
2,949,929	+				-0.2
2,949,929	+				-0.7
2,949,929	+				-1.7
2,949,930	-				+0.6
2,949,930	-				+0.1
2,949,930	-				+0.0
2,949,930	-				+0.3
2,949,930	-				+1.6
2,949,966	+				-1.3
2,949,966	+				-0.5
2,949,966	+				+0.7
2,949,967	-				-1.5
2,949,967	-				-0.7
2,949,967	-				-0.3
2,949,967	-				+0.3
2,949,992	+				-1.3
2,949,993	-				+1.6
2,949,998	-		HGI48_RS13465	0.11	+1.3
2,950,013	+		HGI48_RS13465	0.17	+0.3
2,950,013	+		HGI48_RS13465	0.17	+0.4
2,950,014	-		HGI48_RS13465	0.17	+0.6
2,950,139	+		HGI48_RS13465	0.64	-1.3