Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13440

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,945,900	+		HGI48_RS13435	0.41	+0.3
2,945,900	+		HGI48_RS13435	0.41	+1.0
2,945,901	-		HGI48_RS13435	0.41	-0.3
2,945,933	+		HGI48_RS13435	0.43	-1.1
2,945,960	+		HGI48_RS13435	0.45	+2.3
2,945,961	-		HGI48_RS13435	0.45	+0.9
2,945,964	-		HGI48_RS13435	0.45	+1.1
2,945,984	+		HGI48_RS13435	0.47	+0.6
2,945,985	-		HGI48_RS13435	0.47	-0.7
2,945,985	-				+2.6
2,945,985	-		HGI48_RS13435	0.47	+0.7
2,945,987	+		HGI48_RS13435	0.47	+1.1
2,945,987	+		HGI48_RS13435	0.47	+0.9
2,945,988	-		HGI48_RS13435	0.47	-0.2
2,945,988	-		HGI48_RS13435	0.47	+0.3
2,946,010	+		HGI48_RS13435	0.49	+0.9
2,946,011	-		HGI48_RS13435	0.49	+1.5
2,946,018	-		HGI48_RS13435	0.50	+0.8
2,946,057	-		HGI48_RS13435	0.52	-3.3
2,946,057	-		HGI48_RS13435	0.52	+1.5
2,946,057	-		HGI48_RS13435	0.52	+0.9
2,946,209	-		HGI48_RS13435	0.64	+0.0
2,946,209	-		HGI48_RS13435	0.64	-0.1
2,946,332	-		HGI48_RS13435	0.73	+1.3
2,946,406	+		HGI48_RS13435	0.79	+0.9
2,946,487	+		HGI48_RS13435	0.85	+0.5
2,946,488	-		HGI48_RS13435	0.85	+1.2
2,946,488	-		HGI48_RS13435	0.85	+0.2
2,946,574	-				-0.0
2,946,574	-				-1.1
2,946,574	-				+0.5
2,946,643	+				+0.8
2,946,643	+				+1.1
2,946,643	+				+0.3
2,946,643	+				-0.1
2,946,643	+				-0.7
2,946,644	-				-0.1
2,946,644	-				-0.9
2,946,644	-				+0.9
2,946,644	-				-0.0
2,946,644	-				-0.2
2,946,711	+				+0.2
2,946,712	-				-0.3
2,946,727	+				-1.3
2,946,727	+				+0.8
2,946,727	+				+0.5
2,946,728	-				+1.3
2,946,728	-				-0.0
2,946,728	-				-0.2
2,946,728	-				+1.6
2,946,742	+				+1.1
2,946,775	+				-0.1
2,946,794	+				-0.7
2,946,817	-				-0.1
2,946,818	+				+2.1
2,946,818	+				+0.1
2,946,819	-				-0.4
2,946,828	+				+0.2
2,946,834	+				-0.5
2,946,835	-				+0.1
2,946,837	+				+0.9
2,946,862	-				+0.6
2,946,862	-				-1.3
2,946,862	-				-2.3
2,946,881	+		HGI48_RS13440	0.12	+1.1
2,946,881	+		HGI48_RS13440	0.12	+0.8
2,946,941	+		HGI48_RS13440	0.24	-1.4
2,946,941	+		HGI48_RS13440	0.24	+0.1
2,946,941	+		HGI48_RS13440	0.24	+0.3
2,946,941	+		HGI48_RS13440	0.24	+1.8
2,946,941	+		HGI48_RS13440	0.24	+0.7
2,946,941	+				+1.3
2,946,941	+		HGI48_RS13440	0.24	-0.6
2,946,941	+		HGI48_RS13440	0.24	+0.1
2,946,941	+		HGI48_RS13440	0.24	+0.7
2,946,941	+		HGI48_RS13440	0.24	+0.7
2,946,941	+		HGI48_RS13440	0.24	-0.0
2,946,941	+		HGI48_RS13440	0.24	-0.7
2,946,942	-		HGI48_RS13440	0.24	-0.4
2,946,942	-		HGI48_RS13440	0.24	+0.3
2,946,942	-		HGI48_RS13440	0.24	+0.9
2,946,942	-		HGI48_RS13440	0.24	+1.0
2,946,942	-		HGI48_RS13440	0.24	+0.8
2,946,942	-		HGI48_RS13440	0.24	-0.2
2,946,942	-		HGI48_RS13440	0.24	+1.1
2,946,942	-		HGI48_RS13440	0.24	+1.0
2,947,015	-		HGI48_RS13440	0.39	+0.6
2,947,066	+		HGI48_RS13440	0.50	-0.0
2,947,066	+		HGI48_RS13440	0.50	-1.3
2,947,066	+		HGI48_RS13440	0.50	-1.5
2,947,066	+		HGI48_RS13440	0.50	+0.3
2,947,067	-		HGI48_RS13440	0.50	+1.4
2,947,067	-		HGI48_RS13440	0.50	+0.2
2,947,067	-		HGI48_RS13440	0.50	+0.0
2,947,067	-		HGI48_RS13440	0.50	+0.6
2,947,067	-		HGI48_RS13440	0.50	-0.3
2,947,067	-		HGI48_RS13440	0.50	-0.4
2,947,067	-		HGI48_RS13440	0.50	+1.3
2,947,067	-		HGI48_RS13440	0.50	-0.2
2,947,067	-		HGI48_RS13440	0.50	-0.4
2,947,067	-		HGI48_RS13440	0.50	-1.7
2,947,067	-		HGI48_RS13440	0.50	+0.5
2,947,067	-		HGI48_RS13440	0.50	+0.8
2,947,067	-		HGI48_RS13440	0.50	-0.6
2,947,067	-		HGI48_RS13440	0.50	+0.3
2,947,123	+				-0.3
2,947,124	-		HGI48_RS13440	0.62	+0.3
2,947,124	-		HGI48_RS13440	0.62	+0.9
2,947,152	+		HGI48_RS13440	0.67	-0.4
2,947,153	-		HGI48_RS13440	0.67	+0.3
2,947,153	-		HGI48_RS13440	0.67	-1.3
2,947,221	+		HGI48_RS13440	0.81	+1.4
2,947,232	+				+1.3
2,947,233	-		HGI48_RS13440	0.84	+0.3
2,947,233	-		HGI48_RS13440	0.84	-0.1
2,947,235	+		HGI48_RS13440	0.84	+0.9
2,947,235	+				+0.7
2,947,264	-				+0.3
2,947,272	-				-0.0
2,947,312	+				-0.3
2,947,312	+				-0.1
2,947,312	+				+0.7
2,947,313	-				-0.2
2,947,313	-				+0.0
2,947,317	-				-2.2
2,947,317	-				-0.2
2,947,317	-				+1.1
2,947,380	-				+0.6
2,947,382	+				+0.3
2,947,382	+				-0.4
2,947,434	+		HGI48_RS13445	0.12	+2.3
2,947,434	+		HGI48_RS13445	0.12	+1.6
2,947,435	-		HGI48_RS13445	0.12	-0.3
2,947,435	-		HGI48_RS13445	0.12	+0.9
2,947,435	-		HGI48_RS13445	0.12	+1.5
2,947,445	+				+1.9
2,947,445	+		HGI48_RS13445	0.13	+0.3
2,947,446	-		HGI48_RS13445	0.13	+0.1
2,947,446	-		HGI48_RS13445	0.13	+0.5
2,947,556	+		HGI48_RS13445	0.24	+0.2
2,947,557	-		HGI48_RS13445	0.24	-0.5
2,947,559	+		HGI48_RS13445	0.24	+0.6
2,947,572	-		HGI48_RS13445	0.25	+0.9
2,947,587	+		HGI48_RS13445	0.27	+0.6
2,947,609	+		HGI48_RS13445	0.29	+0.2
2,947,636	+		HGI48_RS13445	0.31	-1.3
2,947,636	+		HGI48_RS13445	0.31	+0.5
2,947,636	+		HGI48_RS13445	0.31	+0.5
2,947,636	+		HGI48_RS13445	0.31	+1.6
2,947,637	-		HGI48_RS13445	0.31	+0.5
2,947,637	-		HGI48_RS13445	0.31	+0.3
2,947,637	-		HGI48_RS13445	0.31	+0.2
2,947,637	-		HGI48_RS13445	0.31	+0.8
2,947,761	-		HGI48_RS13445	0.44	+2.3
2,947,796	+		HGI48_RS13445	0.47	+0.9
2,947,796	+		HGI48_RS13445	0.47	-1.6
2,947,797	-		HGI48_RS13445	0.47	+1.5
2,947,797	-		HGI48_RS13445	0.47	-1.5
2,947,815	+		HGI48_RS13445	0.49	+1.4
2,947,835	+		HGI48_RS13445	0.51	+1.5
2,947,836	-		HGI48_RS13445	0.51	+0.3
2,947,836	-		HGI48_RS13445	0.51	-1.0
2,947,836	-				+2.5
2,947,839	+		HGI48_RS13445	0.51	+0.3
2,947,839	+		HGI48_RS13445	0.51	+0.5
2,947,840	-		HGI48_RS13445	0.51	+0.3
2,947,846	+		HGI48_RS13445	0.52	+1.1
2,947,846	+		HGI48_RS13445	0.52	+0.6
2,947,846	+		HGI48_RS13445	0.52	+1.1
2,947,846	+		HGI48_RS13445	0.52	-0.3
2,947,847	-		HGI48_RS13445	0.52	+1.2
2,947,847	-		HGI48_RS13445	0.52	+0.7
2,947,847	-		HGI48_RS13445	0.52	-0.5
2,947,847	-				+0.9
2,947,857	+		HGI48_RS13445	0.53	+0.6
2,947,857	+		HGI48_RS13445	0.53	+1.3
2,947,857	+		HGI48_RS13445	0.53	+0.9
2,947,857	+		HGI48_RS13445	0.53	+1.3
2,947,857	+		HGI48_RS13445	0.53	-0.8
2,947,857	+		HGI48_RS13445	0.53	-0.1
2,947,858	-		HGI48_RS13445	0.53	+2.3
2,947,858	-		HGI48_RS13445	0.53	+0.0
2,947,858	-		HGI48_RS13445	0.53	-2.3
2,947,913	+		HGI48_RS13445	0.59	+1.1
2,947,970	+		HGI48_RS13445	0.64	+0.7
2,947,970	+		HGI48_RS13445	0.64	-0.8
2,947,971	-		HGI48_RS13445	0.64	-0.5
2,947,971	-		HGI48_RS13445	0.64	-0.3
2,947,971	-		HGI48_RS13445	0.64	+0.1
2,947,971	-		HGI48_RS13445	0.64	-0.0
2,947,976	+		HGI48_RS13445	0.65	+0.5
2,947,976	+		HGI48_RS13445	0.65	+2.1
2,947,977	-		HGI48_RS13445	0.65	+1.6
2,947,993	+		HGI48_RS13445	0.66	+1.0
2,947,993	+		HGI48_RS13445	0.66	-0.3
2,947,994	-		HGI48_RS13445	0.67	+0.1
2,947,994	-		HGI48_RS13445	0.67	+1.5
2,947,994	-		HGI48_RS13445	0.67	+0.7
2,948,083	+				-0.3
2,948,084	-		HGI48_RS13445	0.75	+1.2
2,948,084	-		HGI48_RS13445	0.75	-0.4
2,948,084	-		HGI48_RS13445	0.75	+0.3
2,948,168	+		HGI48_RS13445	0.84	-0.5
2,948,169	-		HGI48_RS13445	0.84	+0.9
2,948,169	-		HGI48_RS13445	0.84	+1.3
2,948,184	-		HGI48_RS13445	0.85	+0.8
2,948,184	-		HGI48_RS13445	0.85	-1.8
2,948,244	-				-0.7
2,948,248	+				+1.5
2,948,248	+				+1.5
2,948,248	+				+0.1
2,948,248	+				+1.0
2,948,249	-				+0.4
2,948,249	-				+1.6
2,948,249	-				+0.2
2,948,259	+				+0.1
2,948,259	+				-0.8
2,948,260	-				+1.3
2,948,286	-				+0.7
2,948,292	-				+0.7
2,948,296	+				-0.4
2,948,297	-				+0.0
2,948,297	-				+0.0