Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13425

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,942,548	+				+2.1
2,942,697	+		HGI48_RS13415	0.89	+1.4
2,942,698	-		HGI48_RS13415	0.89	+0.9
2,942,701	+				+2.5
2,942,701	+		HGI48_RS13415	0.89	+0.3
2,942,701	+		HGI48_RS13415	0.89	+0.7
2,942,701	+		HGI48_RS13415	0.89	+0.5
2,942,701	+		HGI48_RS13415	0.89	+0.9
2,942,701	+		HGI48_RS13415	0.89	+0.5
2,942,701	+				+0.7
2,942,701	+		HGI48_RS13415	0.89	+0.5
2,942,701	+		HGI48_RS13415	0.89	+0.6
2,942,701	+		HGI48_RS13415	0.89	-0.8
2,942,701	+		HGI48_RS13415	0.89	-0.2
2,942,701	+		HGI48_RS13415	0.89	-0.6
2,942,701	+		HGI48_RS13415	0.89	-0.6
2,942,702	-		HGI48_RS13415	0.89	-1.3
2,942,702	-		HGI48_RS13415	0.89	+0.5
2,942,702	-		HGI48_RS13415	0.89	+0.4
2,942,702	-		HGI48_RS13415	0.89	+0.6
2,942,702	-		HGI48_RS13415	0.89	+0.4
2,942,702	-		HGI48_RS13415	0.89	+1.9
2,942,702	-		HGI48_RS13415	0.89	-0.7
2,942,702	-		HGI48_RS13415	0.89	-0.4
2,942,702	-		HGI48_RS13415	0.89	+0.5
2,942,702	-		HGI48_RS13415	0.89	-1.3
2,942,702	-		HGI48_RS13415	0.89	+1.2
2,942,702	-				+1.9
2,942,702	-		HGI48_RS13415	0.89	-1.7
2,942,702	-		HGI48_RS13415	0.89	-1.3
2,942,702	-		HGI48_RS13415	0.89	+1.3
2,942,702	-		HGI48_RS13415	0.89	+1.7
2,942,702	-		HGI48_RS13415	0.89	-0.9
2,942,745	+				+2.1
2,942,745	+				+0.6
2,942,745	+				+1.1
2,942,745	+				+1.1
2,942,745	+				-2.9
2,942,745	+				+0.9
2,942,745	+				+1.0
2,942,746	-				+0.1
2,942,746	-				+1.9
2,942,746	-				+0.9
2,942,746	-				-0.9
2,942,746	-				+0.4
2,942,746	-				+0.4
2,942,746	-				+0.6
2,942,746	-				+1.3
2,942,804	+				+1.6
2,942,804	+				+0.7
2,942,805	-				+0.9
2,943,001	+		HGI48_RS13420	0.27	+0.3
2,943,002	-		HGI48_RS13420	0.28	-0.4
2,943,051	+		HGI48_RS13420	0.34	+1.0
2,943,051	+		HGI48_RS13420	0.34	+0.8
2,943,101	-		HGI48_RS13420	0.41	+0.9
2,943,195	-		HGI48_RS13420	0.54	+0.9
2,943,289	+		HGI48_RS13420	0.66	+0.7
2,943,289	+		HGI48_RS13420	0.66	-1.5
2,943,289	+		HGI48_RS13420	0.66	-2.0
2,943,289	+		HGI48_RS13420	0.66	+1.1
2,943,290	-		HGI48_RS13420	0.67	+0.6
2,943,290	-		HGI48_RS13420	0.67	+0.5
2,943,290	-		HGI48_RS13420	0.67	+0.6
2,943,290	-		HGI48_RS13420	0.67	+0.3
2,943,290	-		HGI48_RS13420	0.67	-0.0
2,943,343	+		HGI48_RS13420	0.74	+0.8
2,943,343	+		HGI48_RS13420	0.74	-1.5
2,943,343	+		HGI48_RS13420	0.74	-0.3
2,943,343	+		HGI48_RS13420	0.74	+1.9
2,943,344	-		HGI48_RS13420	0.74	-0.6
2,943,386	+		HGI48_RS13420	0.80	-0.4
2,943,386	+		HGI48_RS13420	0.80	+0.4
2,943,392	+		HGI48_RS13420	0.80	-0.4
2,943,568	+				+1.5
2,943,598	+				-0.2
2,943,610	-				-0.1
2,943,670	+				+1.6
2,943,670	+				-0.9
2,943,670	+				+2.1
2,943,671	-				+1.2
2,943,671	-				-0.2
2,943,671	-				+0.3
2,943,729	+		HGI48_RS13425	0.14	+0.5
2,943,729	+		HGI48_RS13425	0.14	+0.3
2,943,729	+		HGI48_RS13425	0.14	-0.3
2,943,729	+		HGI48_RS13425	0.14	-1.0
2,943,730	-		HGI48_RS13425	0.14	-0.3
2,943,730	-		HGI48_RS13425	0.14	+1.4
2,943,818	+		HGI48_RS13425	0.21	+0.6
2,943,818	+		HGI48_RS13425	0.21	+0.5
2,943,818	+		HGI48_RS13425	0.21	-1.8
2,943,819	-		HGI48_RS13425	0.21	+1.1
2,943,861	+		HGI48_RS13425	0.24	+1.0
2,943,915	+		HGI48_RS13425	0.28	+0.6
2,943,915	+		HGI48_RS13425	0.28	+0.3
2,943,915	+		HGI48_RS13425	0.28	-1.1
2,943,915	+		HGI48_RS13425	0.28	+1.6
2,943,915	+		HGI48_RS13425	0.28	+1.1
2,943,916	-		HGI48_RS13425	0.28	-0.8
2,943,988	+		HGI48_RS13425	0.33	+0.5
2,943,989	-		HGI48_RS13425	0.33	-0.1
2,944,063	+		HGI48_RS13425	0.38	+1.0
2,944,093	+		HGI48_RS13425	0.41	+0.7
2,944,094	-		HGI48_RS13425	0.41	+1.3
2,944,126	+		HGI48_RS13425	0.43	+0.0
2,944,126	+		HGI48_RS13425	0.43	-0.4
2,944,126	+		HGI48_RS13425	0.43	-0.7
2,944,126	+		HGI48_RS13425	0.43	-0.1
2,944,126	+		HGI48_RS13425	0.43	+0.8
2,944,127	-		HGI48_RS13425	0.43	+0.0
2,944,127	-		HGI48_RS13425	0.43	+2.5
2,944,127	-				+2.7
2,944,127	-		HGI48_RS13425	0.43	-0.1
2,944,140	+		HGI48_RS13425	0.44	+1.1
2,944,140	+				-1.3
2,944,140	+		HGI48_RS13425	0.44	+1.4
2,944,140	+		HGI48_RS13425	0.44	+0.7
2,944,140	+		HGI48_RS13425	0.44	+1.0
2,944,140	+		HGI48_RS13425	0.44	-0.3
2,944,141	-				+0.7
2,944,141	-		HGI48_RS13425	0.44	-0.2
2,944,141	-		HGI48_RS13425	0.44	+0.2
2,944,141	-		HGI48_RS13425	0.44	+0.2
2,944,141	-		HGI48_RS13425	0.44	+1.1
2,944,146	+		HGI48_RS13425	0.44	-0.2
2,944,146	+		HGI48_RS13425	0.44	-1.0
2,944,146	+		HGI48_RS13425	0.44	+0.6
2,944,146	+		HGI48_RS13425	0.44	+1.0
2,944,147	-		HGI48_RS13425	0.45	+0.3
2,944,286	+		HGI48_RS13425	0.55	+0.4
2,944,286	+		HGI48_RS13425	0.55	+1.3
2,944,287	-				-0.3
2,944,287	-		HGI48_RS13425	0.55	+1.0
2,944,287	-		HGI48_RS13425	0.55	-1.5
2,944,287	-		HGI48_RS13425	0.55	+1.2
2,944,291	+		HGI48_RS13425	0.55	+0.3
2,944,332	+		HGI48_RS13425	0.58	+0.6
2,944,332	+		HGI48_RS13425	0.58	+0.9
2,944,332	+		HGI48_RS13425	0.58	+0.6
2,944,332	+		HGI48_RS13425	0.58	-0.2
2,944,332	+		HGI48_RS13425	0.58	-0.8
2,944,332	+		HGI48_RS13425	0.58	+0.4
2,944,332	+		HGI48_RS13425	0.58	-0.9
2,944,332	+		HGI48_RS13425	0.58	+1.5
2,944,333	-		HGI48_RS13425	0.58	+1.0
2,944,333	-		HGI48_RS13425	0.58	+0.8
2,944,333	-				+1.7
2,944,333	-		HGI48_RS13425	0.58	+0.9
2,944,333	-		HGI48_RS13425	0.58	+1.4
2,944,333	-		HGI48_RS13425	0.58	+0.3
2,944,333	-		HGI48_RS13425	0.58	+0.4
2,944,333	-		HGI48_RS13425	0.58	+0.8
2,944,333	-		HGI48_RS13425	0.58	-1.0
2,944,333	-		HGI48_RS13425	0.58	-0.4
2,944,333	-		HGI48_RS13425	0.58	-0.6
2,944,333	-		HGI48_RS13425	0.58	+1.2
2,944,333	-		HGI48_RS13425	0.58	+0.5
2,944,343	-		HGI48_RS13425	0.59	+0.2
2,944,362	-		HGI48_RS13425	0.60	-2.3
2,944,478	-		HGI48_RS13425	0.69	-1.1
2,944,478	-		HGI48_RS13425	0.69	+0.3
2,944,508	+		HGI48_RS13425	0.71	+1.0
2,944,510	+		HGI48_RS13425	0.71	+2.0
2,944,511	-		HGI48_RS13425	0.71	-0.5
2,944,511	-				+1.6
2,944,582	+		HGI48_RS13425	0.76	+2.1
2,944,582	+		HGI48_RS13425	0.76	-1.2
2,944,582	+		HGI48_RS13425	0.76	-0.7
2,944,583	-		HGI48_RS13425	0.76	+0.7
2,944,583	-		HGI48_RS13425	0.76	+0.4
2,944,583	-		HGI48_RS13425	0.76	+1.3
2,944,583	-		HGI48_RS13425	0.76	+0.9
2,944,633	+		HGI48_RS13425	0.80	-2.3
2,944,634	-		HGI48_RS13425	0.80	-0.1
2,944,634	-		HGI48_RS13425	0.80	-0.7
2,944,645	+		HGI48_RS13425	0.81	+1.1
2,944,671	+		HGI48_RS13425	0.83	+0.4
2,944,672	-				-1.3
2,944,685	+		HGI48_RS13425	0.84	+0.5
2,944,685	+		HGI48_RS13425	0.84	+0.1
2,944,686	-		HGI48_RS13425	0.84	+1.3
2,944,724	+		HGI48_RS13425	0.87	+0.9
2,944,724	+				+2.0
2,944,747	+		HGI48_RS13425	0.88	+0.0
2,944,748	-		HGI48_RS13425	0.88	-0.7
2,944,760	+		HGI48_RS13425	0.89	-2.0
2,944,797	+				-0.2
2,944,797	+				+1.4
2,944,797	+				+0.1
2,944,797	+				+0.7
2,944,798	-				+0.6
2,944,798	-				+1.2
2,944,798	-				-0.3
2,944,929	+				+0.7
2,944,930	-				+0.5
2,944,930	-				-0.1
2,944,971	+				+0.3
2,944,998	-		HGI48_RS13430	0.19	+0.0
2,945,008	+		HGI48_RS13430	0.21	+1.3
2,945,008	+		HGI48_RS13430	0.21	+0.9
2,945,008	+		HGI48_RS13430	0.21	-0.7
2,945,008	+		HGI48_RS13430	0.21	+0.5
2,945,032	-		HGI48_RS13430	0.27	-2.3
2,945,042	+		HGI48_RS13430	0.29	+1.1
2,945,042	+		HGI48_RS13430	0.29	+0.9
2,945,043	-		HGI48_RS13430	0.29	+1.2
2,945,043	-		HGI48_RS13430	0.29	+0.6
2,945,043	-		HGI48_RS13430	0.29	+0.1
2,945,053	-		HGI48_RS13430	0.31	-0.8
2,945,095	-		HGI48_RS13430	0.41	+0.7
2,945,103	+		HGI48_RS13430	0.43	-0.4
2,945,104	-		HGI48_RS13430	0.43	-0.1
2,945,120	-		HGI48_RS13430	0.46	+0.7
2,945,174	+				+1.9
2,945,175	-		HGI48_RS13430	0.59	+1.2
2,945,177	+		HGI48_RS13430	0.59	-0.1
2,945,177	+		HGI48_RS13430	0.59	-0.8
2,945,178	-		HGI48_RS13430	0.60	+1.0
2,945,178	-		HGI48_RS13430	0.60	+0.0
2,945,247	+		HGI48_RS13430	0.75	+1.0
2,945,247	+				+0.9
2,945,248	-		HGI48_RS13430	0.76	-0.1
2,945,248	-		HGI48_RS13430	0.76	-0.0
2,945,250	+		HGI48_RS13430	0.76	+2.0
2,945,250	+		HGI48_RS13430	0.76	+0.3
2,945,251	-		HGI48_RS13430	0.76	-1.0
2,945,275	-		HGI48_RS13430	0.82	+0.8
2,945,353	+				-1.7
2,945,354	-				+0.3
2,945,354	-				+0.6
2,945,354	-				-0.3
2,945,354	-				-0.5
2,945,354	-				+1.2
2,945,354	-				-2.7
2,945,354	-				+0.3
2,945,354	-				-0.1
2,945,357	+				-0.2
2,945,357	+				-0.2
2,945,358	-				+1.4
2,945,358	-				-0.1
2,945,358	-				-0.2
2,945,358	-				-1.3
2,945,358	-				+0.1
2,945,428	+				+1.2
2,945,428	+				-0.1
2,945,428	+				+0.3
2,945,519	+		HGI48_RS13435	0.12	-0.6
2,945,519	+		HGI48_RS13435	0.12	+1.3
2,945,519	+		HGI48_RS13435	0.12	+0.5
2,945,520	-		HGI48_RS13435	0.12	-0.3
2,945,522	+		HGI48_RS13435	0.12	-1.2
2,945,522	+		HGI48_RS13435	0.12	+0.8
2,945,522	+		HGI48_RS13435	0.12	+1.3
2,945,522	+		HGI48_RS13435	0.12	+0.1
2,945,523	-		HGI48_RS13435	0.12	+0.1
2,945,523	-		HGI48_RS13435	0.12	+0.7
2,945,777	+		HGI48_RS13435	0.31	+1.2
2,945,777	+		HGI48_RS13435	0.31	+0.8
2,945,777	+		HGI48_RS13435	0.31	+0.8
2,945,777	+		HGI48_RS13435	0.31	-0.0
2,945,777	+		HGI48_RS13435	0.31	-0.9
2,945,777	+		HGI48_RS13435	0.31	-0.4
2,945,777	+		HGI48_RS13435	0.31	+1.5
2,945,777	+		HGI48_RS13435	0.31	+1.7
2,945,778	-		HGI48_RS13435	0.32	-0.7
2,945,778	-		HGI48_RS13435	0.32	+0.3
2,945,778	-		HGI48_RS13435	0.32	+1.3
2,945,778	-		HGI48_RS13435	0.32	-1.3
2,945,900	+		HGI48_RS13435	0.41	+0.3
2,945,900	+		HGI48_RS13435	0.41	+1.0
2,945,901	-		HGI48_RS13435	0.41	-0.3