Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13405

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,938,444	-				-2.0
2,938,480	+				-0.9
2,938,481	-				-1.4
2,938,481	-				-1.4
2,938,481	-				-0.1
2,938,481	-				-0.3
2,938,481	-				+0.3
2,938,481	-				-1.1
2,938,482	+				+1.3
2,938,482	+				-0.4
2,938,483	-				-0.7
2,938,483	-				-1.7
2,938,504	+				-2.5
2,938,563	+		HGI48_RS13395	0.21	-2.0
2,938,563	+				+0.3
2,938,666	-		HGI48_RS13395	0.46	+0.7
2,938,674	+		HGI48_RS13395	0.48	-0.5
2,938,701	-		HGI48_RS13395	0.55	-2.7
2,938,748	-		HGI48_RS13395	0.66	-1.0
2,938,748	-		HGI48_RS13395	0.66	-2.3
2,938,780	-		HGI48_RS13395	0.74	-1.0
2,938,780	-		HGI48_RS13395	0.74	-1.5
2,938,803	-		HGI48_RS13395	0.79	-1.4
2,938,827	+				+1.3
2,938,827	+		HGI48_RS13395	0.85	-0.7
2,938,827	+		HGI48_RS13395	0.85	+0.3
2,938,828	-		HGI48_RS13395	0.85	+0.4
2,938,911	-				+1.5
2,938,973	-		HGI48_RS13400	0.24	+0.8
2,938,999	+		HGI48_RS13400	0.31	-0.1
2,939,000	-		HGI48_RS13400	0.31	-0.1
2,939,004	+		HGI48_RS13400	0.32	+0.2
2,939,005	-		HGI48_RS13400	0.33	+0.7
2,939,005	-		HGI48_RS13400	0.33	+1.6
2,939,005	-		HGI48_RS13400	0.33	-0.0
2,939,005	-		HGI48_RS13400	0.33	-2.0
2,939,005	-		HGI48_RS13400	0.33	-0.1
2,939,071	+		HGI48_RS13400	0.51	+0.7
2,939,098	+		HGI48_RS13400	0.58	+0.8
2,939,099	-		HGI48_RS13400	0.58	-1.0
2,939,202	+		HGI48_RS13400	0.87	+0.3
2,939,202	+		HGI48_RS13400	0.87	-0.5
2,939,202	+				-0.7
2,939,202	+		HGI48_RS13400	0.87	-0.4
2,939,202	+		HGI48_RS13400	0.87	+0.1
2,939,203	-		HGI48_RS13400	0.87	+0.1
2,939,203	-		HGI48_RS13400	0.87	+0.3
2,939,203	-		HGI48_RS13400	0.87	+0.1
2,939,203	-		HGI48_RS13400	0.87	-0.4
2,939,203	-		HGI48_RS13400	0.87	-1.3
2,939,203	-		HGI48_RS13400	0.87	-1.4
2,939,222	+				+0.1
2,939,224	+				-0.0
2,939,224	+				+1.7
2,939,224	+				-1.5
2,939,224	+				-1.1
2,939,224	+				+0.3
2,939,224	+				+0.0
2,939,225	-				-0.3
2,939,225	-				+0.9
2,939,225	-				+0.3
2,939,267	+				-0.1
2,939,267	+				+0.7
2,939,268	-				+0.7
2,939,268	-				-1.3
2,939,268	-				-1.7
2,939,312	+				-1.0
2,939,312	+				-0.4
2,939,313	-				-1.0
2,939,313	-				-1.7
2,939,313	-				-0.7
2,939,313	-				+0.3
2,939,314	+				-0.2
2,939,314	+				+0.3
2,939,314	+				-0.4
2,939,314	+				-0.7
2,939,314	+				-0.4
2,939,314	+				-0.3
2,939,314	+				-1.7
2,939,315	-				-0.1
2,939,315	-				-0.6
2,939,315	-				-0.5
2,939,315	-				-0.7
2,939,315	-				+1.3
2,939,316	+				-1.0
2,939,316	+				-0.1
2,939,316	+				+0.5
2,939,316	+				-0.2
2,939,316	+				+0.1
2,939,316	+				-0.3
2,939,317	-				-0.1
2,939,317	-				-0.7
2,939,317	-				+0.9
2,939,317	-				+0.1
2,939,317	-				-1.3
2,939,317	-				-1.3
2,939,378	+				-0.7
2,939,378	+				-0.2
2,939,379	-				+0.2
2,939,390	-				+0.1
2,939,398	+				-0.0
2,939,415	-				+0.4
2,939,441	+				+0.3
2,939,442	-				-0.1
2,939,443	+				-0.1
2,939,443	+				+0.9
2,939,451	+				+1.1
2,939,451	+				+0.6
2,939,451	+				+1.1
2,939,452	-				+1.9
2,939,484	+		HGI48_RS13405	0.14	-0.0
2,939,485	-		HGI48_RS13405	0.14	-0.7
2,939,517	+		HGI48_RS13405	0.24	+0.3
2,939,517	+		HGI48_RS13405	0.24	-0.7
2,939,517	+		HGI48_RS13405	0.24	-0.0
2,939,517	+		HGI48_RS13405	0.24	-0.5
2,939,517	+		HGI48_RS13405	0.24	+0.7
2,939,518	-		HGI48_RS13405	0.25	+0.5
2,939,518	-		HGI48_RS13405	0.25	+0.3
2,939,518	-		HGI48_RS13405	0.25	+0.1
2,939,518	-		HGI48_RS13405	0.25	+0.1
2,939,577	+		HGI48_RS13405	0.43	+0.8
2,939,578	-		HGI48_RS13405	0.44	+1.1
2,939,578	-		HGI48_RS13405	0.44	-0.6
2,939,578	-		HGI48_RS13405	0.44	+2.0
2,939,749	-				+1.0
2,939,749	-				-0.0
2,939,771	-				-0.5
2,939,800	-				+0.5
2,939,812	+				+0.2
2,939,812	+				+0.7
2,939,816	+				+1.7
2,939,816	+				+0.8
2,939,816	+				+0.7
2,939,816	+				+0.6
2,939,817	-				-0.7
2,939,817	-				+0.1
2,939,818	+				+0.8
2,939,819	-				-0.8
2,939,819	-				-1.3
2,939,861	+				+0.3
2,939,861	+				-0.9
2,939,861	+				+0.8
2,939,861	+				+1.3
2,939,862	-				-0.7
2,939,862	-				-0.9
2,939,862	-				+0.3
2,939,862	-				-0.0
2,939,862	-				+0.0
2,939,862	-				-0.1
2,939,892	+				+0.6
2,939,899	-				-1.1
2,939,903	+				-0.3
2,939,913	+				+0.4
2,939,913	+				-2.3
2,939,913	+				-1.1
2,939,916	-				-1.7
2,939,971	+				-1.3
2,939,991	+				+1.5
2,939,991	+				-1.5
2,939,992	-				+1.3
2,940,007	-				+1.6
2,940,038	+				-0.1
2,940,038	+				-0.3
2,940,039	-				-0.9
2,940,043	+				+2.2
2,940,081	+				+1.3
2,940,081	+				-0.2
2,940,081	+				-0.1
2,940,082	-				-0.7
2,940,082	-				+1.3
2,940,086	+				+0.9
2,940,086	+				+0.2
2,940,086	+				+0.9
2,940,086	+				-1.4
2,940,087	-				+1.2
2,940,087	-				-1.0
2,940,087	-				-1.0
2,940,139	+				+0.3
2,940,140	-				+1.7
2,940,140	-				+0.3
2,940,140	-				-0.0
2,940,140	-				+1.6
2,940,140	-				+0.9
2,940,143	+				+1.3
2,940,144	-				+0.3
2,940,164	+				+0.7
2,940,164	+				-0.0
2,940,165	-				+0.0
2,940,165	-				+1.9
2,940,197	+				+1.3
2,940,197	+				+0.4
2,940,198	-				-2.3
2,940,198	-				+0.3
2,940,198	-				+2.3
2,940,198	-				+0.7
2,940,198	-				+0.2
2,940,198	-				+0.3
2,940,255	+				+0.9
2,940,255	+				+1.1
2,940,255	+				+0.9
2,940,256	-				-0.2
2,940,264	-				-0.7
2,940,284	+				+2.8
2,940,284	+		HGI48_RS13410	0.11	+1.1
2,940,287	+		HGI48_RS13410	0.12	+0.3
2,940,287	+		HGI48_RS13410	0.12	+0.7
2,940,287	+		HGI48_RS13410	0.12	+0.5
2,940,287	+		HGI48_RS13410	0.12	+1.8
2,940,287	+		HGI48_RS13410	0.12	-0.2
2,940,287	+		HGI48_RS13410	0.12	+0.1
2,940,287	+		HGI48_RS13410	0.12	+0.1
2,940,287	+		HGI48_RS13410	0.12	+1.4
2,940,288	-		HGI48_RS13410	0.12	-0.1
2,940,288	-		HGI48_RS13410	0.12	+0.6
2,940,288	-		HGI48_RS13410	0.12	-0.1
2,940,288	-		HGI48_RS13410	0.12	+1.1
2,940,487	-		HGI48_RS13410	0.23	-0.3
2,940,487	-		HGI48_RS13410	0.23	-0.3
2,940,487	-		HGI48_RS13410	0.23	-0.4
2,940,511	+		HGI48_RS13410	0.24	+0.0
2,940,556	+		HGI48_RS13410	0.27	+0.0
2,940,556	+		HGI48_RS13410	0.27	+0.8
2,940,556	+		HGI48_RS13410	0.27	+1.5
2,940,556	+		HGI48_RS13410	0.27	-0.7
2,940,557	-		HGI48_RS13410	0.27	+0.5
2,940,557	-		HGI48_RS13410	0.27	+0.2
2,940,557	-		HGI48_RS13410	0.27	+1.0
2,940,557	-		HGI48_RS13410	0.27	+0.7
2,940,557	-		HGI48_RS13410	0.27	+1.5
2,940,666	-				-0.7
2,940,674	+		HGI48_RS13410	0.34	+0.4
2,940,675	-		HGI48_RS13410	0.34	-0.4
2,940,678	+		HGI48_RS13410	0.34	+0.7
2,940,678	+		HGI48_RS13410	0.34	+0.8
2,940,678	+		HGI48_RS13410	0.34	+0.9
2,940,679	-		HGI48_RS13410	0.34	+0.3
2,940,679	-		HGI48_RS13410	0.34	-0.3
2,940,679	-		HGI48_RS13410	0.34	+0.9
2,940,679	-				+2.6
2,940,679	-		HGI48_RS13410	0.34	+0.3
2,940,679	-		HGI48_RS13410	0.34	-0.0
2,940,743	+		HGI48_RS13410	0.38	-2.2
2,940,743	+		HGI48_RS13410	0.38	-0.0
2,940,744	-		HGI48_RS13410	0.38	+1.2
2,940,744	-		HGI48_RS13410	0.38	+0.3
2,940,744	-		HGI48_RS13410	0.38	+0.7
2,940,744	-		HGI48_RS13410	0.38	+2.7
2,940,744	-		HGI48_RS13410	0.38	-2.5
2,940,744	-		HGI48_RS13410	0.38	-1.7