Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13390

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,935,922	-		HGI48_RS13385	0.62	-0.6
2,936,009	-		HGI48_RS13385	0.72	+0.5
2,936,033	+		HGI48_RS13385	0.75	+0.3
2,936,034	-		HGI48_RS13385	0.75	+2.0
2,936,034	-		HGI48_RS13385	0.75	+0.5
2,936,034	-		HGI48_RS13385	0.75	+0.5
2,936,089	+		HGI48_RS13385	0.81	+0.4
2,936,221	+				+0.1
2,936,221	+				+0.6
2,936,221	+				-2.5
2,936,221	+				+0.4
2,936,222	-				+0.5
2,936,222	-				+0.5
2,936,222	-				+0.8
2,936,222	-				-0.1
2,936,222	-				+1.6
2,936,222	-				+0.5
2,936,222	-				+0.1
2,936,222	-				-1.3
2,936,224	+				-0.9
2,936,224	+				+0.6
2,936,224	+				-2.0
2,936,224	+				+0.3
2,936,224	+				-2.0
2,936,224	+				-0.7
2,936,225	-				-1.7
2,936,225	-				+1.6
2,936,225	-				+0.5
2,936,225	-				+0.0
2,936,225	-				-0.5
2,936,225	-				-1.5
2,936,225	-				+0.7
2,936,225	-				+0.8
2,936,225	-				+1.0
2,936,227	+				-0.7
2,936,227	+				+0.3
2,936,227	+				-0.4
2,936,227	+				-0.1
2,936,227	+				-2.0
2,936,227	+				+0.8
2,936,227	+				-0.2
2,936,228	-				+1.5
2,936,230	+				+0.7
2,936,231	-				+0.7
2,936,231	-				-0.1
2,936,231	-				-0.3
2,936,245	+				+1.1
2,936,246	-				-1.7
2,936,246	-				+0.7
2,936,249	+				+0.5
2,936,249	+				+0.6
2,936,249	+				+2.3
2,936,249	+				+1.5
2,936,249	+				+0.3
2,936,249	+				+1.1
2,936,250	-				+1.4
2,936,250	-				-0.4
2,936,250	-				+1.9
2,936,250	-				+0.3
2,936,252	-				+1.9
2,936,252	-				-3.3
2,936,266	+				+0.8
2,936,266	+				-2.3
2,936,267	-				+2.0
2,936,311	+				-1.0
2,936,312	-				-2.6
2,936,312	-				-2.3
2,936,317	+				+0.3
2,936,342	-				+0.0
2,936,368	-				-1.2
2,936,411	+				-0.7
2,936,411	+				-1.7
2,936,464	+				-0.1
2,936,465	-				-0.1
2,936,486	+				+1.4
2,936,486	+				-0.4
2,936,495	-				-0.7
2,936,495	-				-1.2
2,936,495	-				+0.3
2,936,495	-				-0.2
2,936,499	-				-1.4
2,936,580	+				-0.9
2,936,622	+				+1.6
2,936,622	+				-0.9
2,936,623	-				-0.2
2,936,726	+				+0.3
2,936,726	+				+0.3
2,936,753	+				+0.3
2,936,754	-				+0.1
2,936,762	+				-0.3
2,936,762	+				+0.3
2,936,762	+				+0.6
2,936,764	+				-0.4
2,936,766	+				-1.9
2,936,766	+				+0.3
2,936,766	+				-0.3
2,936,766	+				+0.1
2,936,766	+				+0.9
2,936,766	+				-0.5
2,936,773	+				-0.9
2,936,824	-				-1.4
2,936,840	+				+2.1
2,936,840	+				+0.3
2,936,840	+				-0.0
2,936,841	-				+1.6
2,936,841	-				+0.6
2,936,841	-				-2.0
2,936,859	+				-1.3
2,936,861	+				-1.3
2,936,861	+				+0.2
2,936,861	+				-0.1
2,936,862	-				-1.3
2,936,933	-				-1.2
2,936,955	+				-1.3
2,936,955	+				-1.5
2,936,959	+				-2.0
2,936,959	+				-1.7
2,936,959	+				-1.5
2,936,960	-				-2.0
2,936,960	-				-0.5
2,936,960	-				+2.1
2,937,053	+				-0.5
2,937,053	+				-0.7
2,937,053	+				-1.6
2,937,054	-				+0.9
2,937,055	+				-2.3
2,937,095	+		HGI48_RS13390	0.13	-2.0
2,937,221	-				+0.3
2,937,256	+				-0.7
2,937,259	+		HGI48_RS13390	0.24	+0.3
2,937,289	+		HGI48_RS13390	0.26	-1.1
2,937,290	-		HGI48_RS13390	0.26	+1.3
2,937,296	-		HGI48_RS13390	0.26	-2.0
2,937,319	-		HGI48_RS13390	0.28	-1.3
2,937,319	-		HGI48_RS13390	0.28	-0.7
2,937,377	-		HGI48_RS13390	0.32	+0.1
2,937,377	-		HGI48_RS13390	0.32	-0.7
2,937,418	-		HGI48_RS13390	0.35	-1.5
2,937,436	+		HGI48_RS13390	0.36	-2.0
2,937,454	+		HGI48_RS13390	0.37	+1.6
2,937,663	+		HGI48_RS13390	0.51	-2.5
2,937,663	+		HGI48_RS13390	0.51	-0.1
2,937,668	-		HGI48_RS13390	0.52	-0.7
2,937,697	+				-0.3
2,937,698	-		HGI48_RS13390	0.54	-2.3
2,937,834	-		HGI48_RS13390	0.63	-1.0
2,937,907	+		HGI48_RS13390	0.68	-1.6
2,937,907	+		HGI48_RS13390	0.68	-3.2
2,937,908	-		HGI48_RS13390	0.68	-3.2
2,937,910	+		HGI48_RS13390	0.68	-1.3
2,937,933	+		HGI48_RS13390	0.70	-1.1
2,937,933	+		HGI48_RS13390	0.70	-2.7
2,937,933	+		HGI48_RS13390	0.70	-0.2
2,937,934	-		HGI48_RS13390	0.70	-1.5
2,937,934	-		HGI48_RS13390	0.70	-1.1
2,937,954	+		HGI48_RS13390	0.71	-1.7
2,937,955	-				+0.3
2,937,962	-		HGI48_RS13390	0.72	+0.8
2,938,140	-		HGI48_RS13390	0.84	+0.6
2,938,218	+				+0.3
2,938,219	-		HGI48_RS13390	0.89	-1.5
2,938,258	+				+0.3
2,938,259	-				-0.4
2,938,285	+				-0.4
2,938,288	+				-0.3
2,938,297	+				+0.0
2,938,298	-				-1.7
2,938,309	+				-0.7
2,938,309	+				-0.6
2,938,331	+				+0.7
2,938,374	+				-0.2
2,938,418	-				+0.1
2,938,429	+				-0.7
2,938,430	-				-0.3
2,938,444	-				-2.0
2,938,480	+				-0.9
2,938,481	-				-1.4
2,938,481	-				-1.4
2,938,481	-				-0.1
2,938,481	-				-0.3
2,938,481	-				+0.3
2,938,481	-				-1.1
2,938,482	+				+1.3
2,938,482	+				-0.4
2,938,483	-				-0.7
2,938,483	-				-1.7
2,938,504	+				-2.5
2,938,563	+		HGI48_RS13395	0.21	-2.0
2,938,563	+				+0.3
2,938,666	-		HGI48_RS13395	0.46	+0.7
2,938,674	+		HGI48_RS13395	0.48	-0.5
2,938,701	-		HGI48_RS13395	0.55	-2.7
2,938,748	-		HGI48_RS13395	0.66	-1.0
2,938,748	-		HGI48_RS13395	0.66	-2.3
2,938,780	-		HGI48_RS13395	0.74	-1.0
2,938,780	-		HGI48_RS13395	0.74	-1.5
2,938,803	-		HGI48_RS13395	0.79	-1.4
2,938,827	+				+1.3
2,938,827	+		HGI48_RS13395	0.85	-0.7
2,938,827	+		HGI48_RS13395	0.85	+0.3
2,938,828	-		HGI48_RS13395	0.85	+0.4
2,938,911	-				+1.5
2,938,973	-		HGI48_RS13400	0.24	+0.8
2,938,999	+		HGI48_RS13400	0.31	-0.1
2,939,000	-		HGI48_RS13400	0.31	-0.1
2,939,004	+		HGI48_RS13400	0.32	+0.2
2,939,005	-		HGI48_RS13400	0.33	+0.7
2,939,005	-		HGI48_RS13400	0.33	+1.6
2,939,005	-		HGI48_RS13400	0.33	-0.0
2,939,005	-		HGI48_RS13400	0.33	-2.0
2,939,005	-		HGI48_RS13400	0.33	-0.1
2,939,071	+		HGI48_RS13400	0.51	+0.7
2,939,098	+		HGI48_RS13400	0.58	+0.8
2,939,099	-		HGI48_RS13400	0.58	-1.0
2,939,202	+		HGI48_RS13400	0.87	+0.3
2,939,202	+		HGI48_RS13400	0.87	-0.5
2,939,202	+				-0.7
2,939,202	+		HGI48_RS13400	0.87	-0.4
2,939,202	+		HGI48_RS13400	0.87	+0.1
2,939,203	-		HGI48_RS13400	0.87	+0.1
2,939,203	-		HGI48_RS13400	0.87	+0.3
2,939,203	-		HGI48_RS13400	0.87	+0.1
2,939,203	-		HGI48_RS13400	0.87	-0.4
2,939,203	-		HGI48_RS13400	0.87	-1.3
2,939,203	-		HGI48_RS13400	0.87	-1.4
2,939,222	+				+0.1
2,939,224	+				-0.0
2,939,224	+				+1.7
2,939,224	+				-1.5
2,939,224	+				-1.1
2,939,224	+				+0.3
2,939,224	+				+0.0
2,939,225	-				-0.3
2,939,225	-				+0.9
2,939,225	-				+0.3
2,939,267	+				-0.1
2,939,267	+				+0.7
2,939,268	-				+0.7
2,939,268	-				-1.3
2,939,268	-				-1.7
2,939,312	+				-1.0
2,939,312	+				-0.4
2,939,313	-				-1.0
2,939,313	-				-1.7
2,939,313	-				-0.7
2,939,313	-				+0.3
2,939,314	+				-0.2
2,939,314	+				+0.3
2,939,314	+				-0.4
2,939,314	+				-0.7
2,939,314	+				-0.4
2,939,314	+				-0.3
2,939,314	+				-1.7
2,939,315	-				-0.1
2,939,315	-				-0.6
2,939,315	-				-0.5
2,939,315	-				-0.7
2,939,315	-				+1.3
2,939,316	+				-1.0
2,939,316	+				-0.1
2,939,316	+				+0.5
2,939,316	+				-0.2
2,939,316	+				+0.1
2,939,316	+				-0.3
2,939,317	-				-0.1
2,939,317	-				-0.7
2,939,317	-				+0.9
2,939,317	-				+0.1
2,939,317	-				-1.3
2,939,317	-				-1.3