Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,919,624	+		HGI48_RS13325	0.77	-0.3
2,919,625	-		HGI48_RS13325	0.78	-1.1
2,919,625	-		HGI48_RS13325	0.78	-1.5
2,919,646	+		HGI48_RS13325	0.81	-0.4
2,919,646	+		HGI48_RS13325	0.81	-0.2
2,919,705	+				+1.7
2,919,744	+				-0.9
2,919,744	+				-0.1
2,919,745	-				+1.0
2,919,745	-				+0.8
2,919,784	+				-0.7
2,919,784	+				-0.5
2,919,887	-				-1.1
2,919,899	+				-1.7
2,919,917	+				+0.6
2,919,917	+				-0.5
2,919,917	+				-1.3
2,919,917	+				-2.7
2,919,918	-				-0.3
2,919,920	+				-0.3
2,919,995	+		HGI48_RS13330	0.49	+0.0
2,920,131	+				-0.4
2,920,132	-				-1.8
2,920,205	-				-0.9
2,920,223	+				-2.0
2,920,224	-				+0.5
2,920,230	+				+1.5
2,920,341	-				+1.1
2,920,361	+				-2.7
2,920,402	-				-0.6
2,920,415	-				-0.5
2,920,415	-				+0.1
2,920,417	-				+0.3
2,920,429	+				-0.4
2,920,430	-				+0.1
2,920,497	-				+1.6
2,920,538	+				-0.5
2,920,539	-				-0.5
2,920,563	+				+0.3
2,920,588	+				-0.6
2,920,588	+				-0.7
2,920,588	+				-1.0
2,920,588	+				-0.5
2,920,707	+		HGI48_RS13335	0.14	+2.4
2,920,708	-		HGI48_RS13335	0.14	+0.1
2,920,708	-		HGI48_RS13335	0.14	-1.3
2,920,712	+				+0.3
2,920,712	+				+1.0
2,920,713	-		HGI48_RS13335	0.15	-1.0
2,920,765	+		HGI48_RS13335	0.18	-0.1
2,920,766	-		HGI48_RS13335	0.18	-0.9
2,920,767	+				+0.3
2,920,767	+		HGI48_RS13335	0.18	-0.2
2,920,767	+		HGI48_RS13335	0.18	-0.5
2,920,797	+		HGI48_RS13335	0.20	+0.5
2,920,815	+		HGI48_RS13335	0.21	-1.3
2,920,815	+		HGI48_RS13335	0.21	-0.6
2,920,816	-		HGI48_RS13335	0.21	-0.8
2,920,825	+		HGI48_RS13335	0.22	-0.7
2,920,825	+		HGI48_RS13335	0.22	-0.7
2,920,855	-				+1.6
2,920,918	+		HGI48_RS13335	0.27	-0.4
2,920,918	+		HGI48_RS13335	0.27	-0.2
2,920,918	+		HGI48_RS13335	0.27	+0.7
2,920,919	-		HGI48_RS13335	0.28	-1.6
2,920,919	-		HGI48_RS13335	0.28	-0.6
2,920,919	-				-0.7
2,920,919	-		HGI48_RS13335	0.28	+0.2
2,920,919	-		HGI48_RS13335	0.28	+0.5
2,920,919	-				+1.9
2,920,967	-		HGI48_RS13335	0.31	-1.7
2,920,972	+		HGI48_RS13335	0.31	-1.5
2,920,972	+		HGI48_RS13335	0.31	-0.7
2,920,973	-				+0.7
2,920,973	-		HGI48_RS13335	0.31	+0.5
2,920,973	-		HGI48_RS13335	0.31	-0.3
2,920,979	+		HGI48_RS13335	0.31	-1.3
2,920,980	-		HGI48_RS13335	0.31	+2.0
2,920,980	-		HGI48_RS13335	0.31	+0.5
2,920,980	-		HGI48_RS13335	0.31	+0.5
2,920,980	-		HGI48_RS13335	0.31	+0.5
2,920,980	-		HGI48_RS13335	0.31	-0.6
2,921,010	+		HGI48_RS13335	0.33	-1.5
2,921,010	+		HGI48_RS13335	0.33	-0.3
2,921,011	-		HGI48_RS13335	0.33	-0.7
2,921,011	-		HGI48_RS13335	0.33	-0.7
2,921,011	-		HGI48_RS13335	0.33	+0.3
2,921,089	-		HGI48_RS13335	0.38	+0.2
2,921,104	+		HGI48_RS13335	0.39	+0.3
2,921,105	-		HGI48_RS13335	0.39	-0.7
2,921,105	-		HGI48_RS13335	0.39	-0.6
2,921,105	-		HGI48_RS13335	0.39	-0.1
2,921,204	+		HGI48_RS13335	0.45	-0.2
2,921,204	+				+0.3
2,921,205	-		HGI48_RS13335	0.45	-0.1
2,921,205	-		HGI48_RS13335	0.45	+1.2
2,921,226	+		HGI48_RS13335	0.47	-0.7
2,921,227	-		HGI48_RS13335	0.47	-0.4
2,921,267	+		HGI48_RS13335	0.49	+0.1
2,921,267	+		HGI48_RS13335	0.49	-0.5
2,921,268	-		HGI48_RS13335	0.49	+0.1
2,921,268	-		HGI48_RS13335	0.49	+0.6
2,921,268	-		HGI48_RS13335	0.49	+0.5
2,921,268	-		HGI48_RS13335	0.49	+0.6
2,921,268	-		HGI48_RS13335	0.49	-0.5
2,921,268	-		HGI48_RS13335	0.49	+0.8
2,921,489	+		HGI48_RS13335	0.63	-0.0
2,921,496	+		HGI48_RS13335	0.63	+1.6
2,921,496	+		HGI48_RS13335	0.63	-0.8
2,921,496	+		HGI48_RS13335	0.63	-0.1
2,921,496	+		HGI48_RS13335	0.63	-0.0
2,921,496	+		HGI48_RS13335	0.63	-1.0
2,921,496	+		HGI48_RS13335	0.63	-1.2
2,921,496	+		HGI48_RS13335	0.63	-0.5
2,921,497	-		HGI48_RS13335	0.64	-0.0
2,921,497	-		HGI48_RS13335	0.64	+0.5
2,921,497	-		HGI48_RS13335	0.64	-0.1
2,921,497	-		HGI48_RS13335	0.64	+0.5
2,921,497	-		HGI48_RS13335	0.64	-0.3
2,921,519	+		HGI48_RS13335	0.65	+0.1
2,921,519	+				-0.3
2,921,520	-		HGI48_RS13335	0.65	-1.5
2,921,610	-				-1.3
2,921,742	-		HGI48_RS13335	0.79	-0.3
2,922,039	+				+1.4
2,922,039	+				+1.0
2,922,039	+				-1.0
2,922,039	+				+0.7
2,922,040	-				+0.1
2,922,053	+				+1.7
2,922,053	+				-0.2
2,922,053	+				-0.7
2,922,053	+				-0.1
2,922,054	-				-0.7
2,922,158	+				-0.7
2,922,158	+				-0.1
2,922,158	+				-2.3
2,922,158	+				+0.3
2,922,171	+				+0.5
2,922,172	-				-0.7
2,922,172	-				+1.0
2,922,172	-				+1.9
2,922,432	+		HGI48_RS13340	0.36	+1.6
2,922,432	+		HGI48_RS13340	0.36	-2.3
2,922,432	+		HGI48_RS13340	0.36	-0.9
2,922,433	-		HGI48_RS13340	0.36	-0.1
2,922,433	-		HGI48_RS13340	0.36	+0.8
2,922,433	-		HGI48_RS13340	0.36	+0.8
2,922,434	+		HGI48_RS13340	0.36	+0.5
2,922,434	+		HGI48_RS13340	0.36	-0.2
2,922,434	+		HGI48_RS13340	0.36	-1.3
2,922,434	+		HGI48_RS13340	0.36	-0.9
2,922,434	+		HGI48_RS13340	0.36	-0.0
2,922,434	+		HGI48_RS13340	0.36	-2.7
2,922,435	-		HGI48_RS13340	0.36	-1.7
2,922,482	+		HGI48_RS13340	0.42	+0.0
2,922,524	+		HGI48_RS13340	0.47	+1.1
2,922,524	+		HGI48_RS13340	0.47	-0.2
2,922,524	+		HGI48_RS13340	0.47	+0.0
2,922,524	+		HGI48_RS13340	0.47	+0.1
2,922,524	+		HGI48_RS13340	0.47	+0.1
2,922,524	+		HGI48_RS13340	0.47	-0.7
2,922,525	-				+0.9
2,922,525	-		HGI48_RS13340	0.47	-0.4
2,922,525	-		HGI48_RS13340	0.47	-2.3
2,922,619	-		HGI48_RS13340	0.59	+0.4
2,922,619	-		HGI48_RS13340	0.59	+0.3
2,922,619	-		HGI48_RS13340	0.59	+0.9
2,922,619	-		HGI48_RS13340	0.59	-0.4
2,922,619	-		HGI48_RS13340	0.59	+0.4
2,922,621	+		HGI48_RS13340	0.60	-0.7
2,922,621	+		HGI48_RS13340	0.60	-0.4
2,922,621	+		HGI48_RS13340	0.60	-0.1
2,922,621	+		HGI48_RS13340	0.60	-1.7
2,922,622	-		HGI48_RS13340	0.60	-0.9
2,922,622	-		HGI48_RS13340	0.60	-0.1
2,922,622	-		HGI48_RS13340	0.60	-0.1
2,922,622	-				+0.3
2,922,636	+		HGI48_RS13340	0.61	+0.5
2,922,721	-		HGI48_RS13340	0.72	-2.0
2,922,727	+		HGI48_RS13340	0.73	-0.7
2,922,728	-				-0.3
2,922,728	-		HGI48_RS13340	0.73	-0.6
2,922,740	+				+0.3
2,922,740	+				-0.7
2,922,741	-		HGI48_RS13340	0.75	+0.0
2,922,741	-		HGI48_RS13340	0.75	-0.0
2,922,741	-		HGI48_RS13340	0.75	-0.9
2,922,741	-		HGI48_RS13340	0.75	-2.3
2,922,741	-				+0.9
2,922,940	-				+0.0
2,922,950	+				-2.5
2,922,950	+				-1.0
2,922,950	+				-0.1
2,922,950	+				+0.5
2,922,950	+				-0.7
2,922,950	+				+0.7
2,922,951	-				+0.3
2,922,951	-				+0.3
2,922,951	-				-0.6
2,923,024	+				-1.1
2,923,024	+				+0.5
2,923,025	-				-1.3
2,923,025	-				-0.4