Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13280

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,906,451	-		HGI48_RS13275	0.62	-2.0
2,906,457	+		HGI48_RS13275	0.62	-2.5
2,906,458	-		HGI48_RS13275	0.62	-3.0
2,906,458	-		HGI48_RS13275	0.62	-1.3
2,906,532	+				-0.7
2,906,532	+		HGI48_RS13275	0.65	-4.7
2,906,533	-		HGI48_RS13275	0.65	-0.9
2,906,533	-		HGI48_RS13275	0.65	-1.6
2,906,549	+				-0.7
2,906,549	+				-1.3
2,906,549	+		HGI48_RS13275	0.66	-2.0
2,906,549	+		HGI48_RS13275	0.66	-0.2
2,906,549	+		HGI48_RS13275	0.66	-1.7
2,906,549	+		HGI48_RS13275	0.66	-1.0
2,906,549	+		HGI48_RS13275	0.66	-2.5
2,906,549	+		HGI48_RS13275	0.66	-1.7
2,906,550	-		HGI48_RS13275	0.66	-2.3
2,906,550	-		HGI48_RS13275	0.66	-1.7
2,906,550	-		HGI48_RS13275	0.66	-0.7
2,906,550	-		HGI48_RS13275	0.66	-2.9
2,906,550	-		HGI48_RS13275	0.66	-1.3
2,906,550	-				-1.3
2,906,550	-		HGI48_RS13275	0.66	-1.7
2,906,550	-		HGI48_RS13275	0.66	-0.9
2,906,550	-		HGI48_RS13275	0.66	-1.8
2,906,550	-		HGI48_RS13275	0.66	-3.8
2,906,550	-		HGI48_RS13275	0.66	-1.5
2,906,550	-		HGI48_RS13275	0.66	-5.0
2,906,550	-		HGI48_RS13275	0.66	+0.7
2,906,554	-				+1.3
2,906,554	-		HGI48_RS13275	0.66	-2.0
2,906,554	-		HGI48_RS13275	0.66	-3.4
2,906,594	+		HGI48_RS13275	0.68	-0.3
2,906,594	+		HGI48_RS13275	0.68	-4.0
2,906,594	+		HGI48_RS13275	0.68	-2.5
2,906,594	+		HGI48_RS13275	0.68	-0.5
2,906,595	-				-1.3
2,906,709	+				-1.3
2,906,709	+		HGI48_RS13275	0.72	-1.5
2,906,709	+		HGI48_RS13275	0.72	+1.5
2,906,709	+				-1.3
2,906,709	+		HGI48_RS13275	0.72	-2.0
2,906,710	-		HGI48_RS13275	0.72	-3.2
2,906,710	-		HGI48_RS13275	0.72	-3.0
2,906,710	-		HGI48_RS13275	0.72	-4.2
2,906,710	-				+0.3
2,906,714	+		HGI48_RS13275	0.73	-0.1
2,906,714	+		HGI48_RS13275	0.73	-2.0
2,906,714	+				+0.3
2,906,715	-		HGI48_RS13275	0.73	-0.1
2,906,715	-				-0.7
2,906,715	-		HGI48_RS13275	0.73	-2.3
2,906,715	-		HGI48_RS13275	0.73	-1.9
2,906,715	-		HGI48_RS13275	0.73	-1.7
2,906,715	-				-1.3
2,906,718	+		HGI48_RS13275	0.73	-0.9
2,906,719	-		HGI48_RS13275	0.73	-2.0
2,906,719	-		HGI48_RS13275	0.73	+0.3
2,906,828	+				-1.3
2,906,828	+		HGI48_RS13275	0.77	-2.5
2,906,828	+		HGI48_RS13275	0.77	-2.7
2,906,828	+				-1.3
2,906,828	+		HGI48_RS13275	0.77	-1.6
2,906,828	+		HGI48_RS13275	0.77	-2.3
2,906,828	+		HGI48_RS13275	0.77	-1.8
2,906,828	+		HGI48_RS13275	0.77	-2.7
2,906,828	+		HGI48_RS13275	0.77	-0.3
2,906,828	+		HGI48_RS13275	0.77	-0.9
2,906,828	+		HGI48_RS13275	0.77	-2.0
2,906,829	-		HGI48_RS13275	0.77	-2.5
2,906,829	-				+0.3
2,906,829	-		HGI48_RS13275	0.77	-2.5
2,906,829	-		HGI48_RS13275	0.77	-2.0
2,906,916	+		HGI48_RS13275	0.80	-2.9
2,906,916	+		HGI48_RS13275	0.80	-0.4
2,906,916	+		HGI48_RS13275	0.80	-2.0
2,906,917	-		HGI48_RS13275	0.80	-2.9
2,906,917	-		HGI48_RS13275	0.80	-3.2
2,906,925	+		HGI48_RS13275	0.81	-0.9
2,906,925	+		HGI48_RS13275	0.81	-2.0
2,906,925	+		HGI48_RS13275	0.81	-2.7
2,906,926	-				+0.3
2,906,926	-				-0.3
2,906,926	-		HGI48_RS13275	0.81	-1.3
2,906,926	-		HGI48_RS13275	0.81	-1.7
2,906,926	-		HGI48_RS13275	0.81	+0.9
2,906,927	+				-0.7
2,906,927	+				-0.7
2,906,928	-		HGI48_RS13275	0.81	-2.3
2,906,928	-				-1.3
2,906,928	-				+1.5
2,906,965	+		HGI48_RS13275	0.82	-4.0
2,906,975	+		HGI48_RS13275	0.83	-2.5
2,906,975	+		HGI48_RS13275	0.83	-2.5
2,906,976	-				-0.7
2,906,976	-				-0.7
2,906,992	+		HGI48_RS13275	0.83	+0.9
2,906,993	-		HGI48_RS13275	0.83	+1.0
2,907,255	+				-3.2
2,907,255	+				-2.5
2,907,255	+				-1.5
2,907,255	+				+0.3
2,907,256	-				-1.3
2,907,273	+				-2.3
2,907,273	+				-2.3
2,907,273	+				-0.7
2,907,273	+				-1.7
2,907,274	-				-1.3
2,907,274	-				+0.3
2,907,274	-				+0.3
2,907,276	+				-0.7
2,907,276	+				-2.0
2,907,276	+				-2.5
2,907,277	-				-1.3
2,907,277	-				-1.3
2,907,384	+				-1.7
2,907,385	-				-1.3
2,907,386	+				-1.7
2,907,386	+				-2.0
2,907,387	-				-3.3
2,907,396	+				+0.6
2,907,397	-				-0.7
2,907,397	-				-3.4
2,907,397	-				-2.8
2,907,397	-				-3.9
2,907,409	-				-0.8
2,907,409	-				-1.9
2,907,409	-				-1.7
2,907,409	-				-1.4
2,907,416	-				+0.1
2,907,429	+				-0.7
2,907,430	-				-2.7
2,907,550	+				-3.4
2,907,552	+				+1.6
2,907,552	+				-1.3
2,907,553	-				-1.0
2,907,616	+		HGI48_RS13280	0.13	-0.7
2,907,616	+		HGI48_RS13280	0.13	-3.6
2,907,617	-				-0.7
2,907,697	+		HGI48_RS13280	0.18	-3.0
2,907,697	+		HGI48_RS13280	0.18	-0.6
2,907,697	+		HGI48_RS13280	0.18	-2.5
2,907,698	-		HGI48_RS13280	0.19	+0.6
2,907,698	-				-0.7
2,907,741	+		HGI48_RS13280	0.21	+0.5
2,907,741	+		HGI48_RS13280	0.21	-1.5
2,907,741	+		HGI48_RS13280	0.21	-0.7
2,907,741	+		HGI48_RS13280	0.21	+0.3
2,907,741	+		HGI48_RS13280	0.21	-1.0
2,907,741	+		HGI48_RS13280	0.21	-2.5
2,907,741	+		HGI48_RS13280	0.21	-3.3
2,907,741	+		HGI48_RS13280	0.21	-0.5
2,907,741	+		HGI48_RS13280	0.21	-2.0
2,907,741	+		HGI48_RS13280	0.21	-3.5
2,907,741	+		HGI48_RS13280	0.21	-1.5
2,907,742	-				-1.3
2,907,742	-		HGI48_RS13280	0.21	-1.3
2,907,742	-		HGI48_RS13280	0.21	-2.5
2,907,742	-		HGI48_RS13280	0.21	-0.7
2,907,742	-		HGI48_RS13280	0.21	-0.7
2,907,742	-		HGI48_RS13280	0.21	-2.5
2,907,742	-		HGI48_RS13280	0.21	-2.3
2,907,742	-		HGI48_RS13280	0.21	-2.5
2,907,742	-				-0.7
2,907,742	-				-1.3
2,907,795	+		HGI48_RS13280	0.25	-2.3
2,907,795	+		HGI48_RS13280	0.25	-1.7
2,907,796	-		HGI48_RS13280	0.25	-2.0
2,907,814	+				-1.3
2,907,815	-		HGI48_RS13280	0.26	-0.6
2,907,890	+		HGI48_RS13280	0.31	-0.9
2,907,957	+				+0.3
2,907,957	+		HGI48_RS13280	0.35	-5.0
2,908,036	+		HGI48_RS13280	0.40	-2.9
2,908,037	-		HGI48_RS13280	0.40	-1.4
2,908,037	-				-0.3
2,908,038	+				-1.3
2,908,038	+				+0.3
2,908,038	+				-1.3
2,908,038	+		HGI48_RS13280	0.40	-0.1
2,908,038	+		HGI48_RS13280	0.40	-1.7
2,908,038	+		HGI48_RS13280	0.40	-2.0
2,908,038	+		HGI48_RS13280	0.40	-2.9
2,908,038	+		HGI48_RS13280	0.40	-0.9
2,908,039	-				-0.3
2,908,039	-		HGI48_RS13280	0.40	-1.7
2,908,039	-		HGI48_RS13280	0.40	-0.9
2,908,066	+		HGI48_RS13280	0.42	-3.5
2,908,067	-				-0.7
2,908,067	-		HGI48_RS13280	0.42	-2.9
2,908,108	+				-0.3
2,908,108	+		HGI48_RS13280	0.45	+0.2
2,908,108	+		HGI48_RS13280	0.45	-4.6
2,908,108	+		HGI48_RS13280	0.45	-0.6
2,908,108	+		HGI48_RS13280	0.45	-2.3
2,908,108	+		HGI48_RS13280	0.45	-3.7
2,908,108	+		HGI48_RS13280	0.45	-1.7
2,908,109	-		HGI48_RS13280	0.45	-1.3
2,908,109	-		HGI48_RS13280	0.45	+0.3
2,908,112	+		HGI48_RS13280	0.45	-2.0
2,908,112	+		HGI48_RS13280	0.45	+0.5
2,908,112	+				-1.3
2,908,112	+		HGI48_RS13280	0.45	-2.6
2,908,112	+		HGI48_RS13280	0.45	-0.6
2,908,112	+		HGI48_RS13280	0.45	-2.3
2,908,112	+				-1.3
2,908,113	-		HGI48_RS13280	0.45	-2.0
2,908,113	-		HGI48_RS13280	0.45	-1.7
2,908,113	-		HGI48_RS13280	0.45	-1.5
2,908,113	-		HGI48_RS13280	0.45	-1.7
2,908,121	-		HGI48_RS13280	0.46	-1.5
2,908,121	-		HGI48_RS13280	0.46	-3.0
2,908,143	+				+0.3
2,908,186	+		HGI48_RS13280	0.50	+0.5
2,908,186	+		HGI48_RS13280	0.50	-1.1
2,908,186	+		HGI48_RS13280	0.50	-1.7
2,908,186	+		HGI48_RS13280	0.50	-2.0
2,908,186	+		HGI48_RS13280	0.50	-2.7
2,908,186	+		HGI48_RS13280	0.50	-0.5
2,908,187	-		HGI48_RS13280	0.50	-1.7
2,908,187	-		HGI48_RS13280	0.50	-0.3
2,908,187	-		HGI48_RS13280	0.50	-0.1
2,908,187	-		HGI48_RS13280	0.50	-0.1
2,908,187	-		HGI48_RS13280	0.50	-1.4
2,908,233	+		HGI48_RS13280	0.53	-0.1
2,908,233	+		HGI48_RS13280	0.53	-2.0
2,908,233	+		HGI48_RS13280	0.53	-0.0
2,908,233	+		HGI48_RS13280	0.53	-3.0
2,908,234	-		HGI48_RS13280	0.53	-2.0
2,908,234	-		HGI48_RS13280	0.53	-0.8
2,908,234	-		HGI48_RS13280	0.53	+0.6
2,908,326	+				+1.3
2,908,326	+		HGI48_RS13280	0.59	+0.6
2,908,327	-		HGI48_RS13280	0.59	-2.9
2,908,327	-		HGI48_RS13280	0.59	-2.9
2,908,327	-				-0.7
2,908,342	+				-1.3
2,908,342	+		HGI48_RS13280	0.60	-2.3
2,908,342	+				+0.3
2,908,342	+				-1.3
2,908,407	-				-1.3
2,908,446	+				+0.3
2,908,446	+		HGI48_RS13280	0.66	-2.0
2,908,446	+				-1.3
2,908,446	+		HGI48_RS13280	0.66	-1.7
2,908,446	+		HGI48_RS13280	0.66	-2.9
2,908,446	+		HGI48_RS13280	0.66	-3.5
2,908,446	+		HGI48_RS13280	0.66	-4.2
2,908,446	+		HGI48_RS13280	0.66	-4.0
2,908,446	+		HGI48_RS13280	0.66	-2.0
2,908,446	+				+2.6
2,908,446	+		HGI48_RS13280	0.66	-2.0
2,908,447	-		HGI48_RS13280	0.66	-2.0
2,908,447	-		HGI48_RS13280	0.66	-2.0
2,908,447	-		HGI48_RS13280	0.66	-1.7
2,908,447	-		HGI48_RS13280	0.66	-2.9
2,908,447	-		HGI48_RS13280	0.66	-1.7
2,908,447	-		HGI48_RS13280	0.66	-0.9
2,908,447	-				-0.7
2,908,447	-				-1.3
2,908,447	-		HGI48_RS13280	0.66	-1.7
2,908,466	+		HGI48_RS13280	0.67	-0.8
2,908,476	+		HGI48_RS13280	0.68	-1.1
2,908,477	-		HGI48_RS13280	0.68	-1.3
2,908,477	-		HGI48_RS13280	0.68	-1.7
2,908,608	+		HGI48_RS13280	0.77	-0.7
2,908,608	+				-0.7
2,908,615	+		HGI48_RS13280	0.77	-3.2
2,908,620	+				-1.3
2,908,620	+		HGI48_RS13280	0.77	-3.0
2,908,621	-		HGI48_RS13280	0.77	-2.5
2,908,621	-		HGI48_RS13280	0.77	-2.5
2,908,621	-				-0.3
2,908,621	-		HGI48_RS13280	0.77	-2.7
2,908,621	-		HGI48_RS13280	0.77	-2.7
2,908,680	+		HGI48_RS13280	0.81	-0.1
2,908,680	+		HGI48_RS13280	0.81	-1.7
2,908,680	+		HGI48_RS13280	0.81	-3.2
2,908,681	-		HGI48_RS13280	0.81	-2.7
2,908,681	-				+0.3
2,908,681	-		HGI48_RS13280	0.81	+0.0
2,908,695	+				+0.3
2,908,825	-				-2.5
2,908,951	+				-0.7
2,908,963	+				-0.5
2,908,964	-				-1.7
2,908,964	-				-1.3
2,908,987	+				-1.3
2,908,987	+				-0.7
2,908,987	+				-2.0
2,908,987	+				-1.3
2,908,987	+				-2.9
2,908,987	+				-2.9
2,908,987	+				-0.7
2,908,987	+				-3.1
2,908,987	+				-1.7
2,908,988	-				+0.1
2,908,988	-				+0.0
2,908,988	-				-1.7
2,908,988	-				+0.9
2,908,998	-				-2.5
2,909,007	-				-0.0
2,909,018	+				-2.0
2,909,018	+				-1.3
2,909,025	+				+0.9
2,909,025	+				-2.3
2,909,030	+				-0.5
2,909,030	+				-1.7
2,909,030	+				-1.3
2,909,031	-				+0.6
2,909,070	+				-0.7
2,909,070	+				-1.6
2,909,071	-				+1.3
2,909,101	+				-0.5
2,909,102	-				+0.4
2,909,162	-				-0.7
2,909,167	+				+0.7
2,909,213	+				-0.7
2,909,213	+				+0.3
2,909,214	-				-3.2
2,909,243	+				-0.5
2,909,243	+				+0.8
2,909,243	+				-0.3
2,909,244	-				-0.2
2,909,244	-				+0.3
2,909,244	-				-0.9
2,909,244	-				-2.2
2,909,256	-				-0.1
2,909,317	+				-0.1
2,909,346	-				-1.3
2,909,373	+				+0.9
2,909,373	+				+1.2
2,909,373	+				-1.1
2,909,374	-				+0.1
2,909,600	+		HGI48_RS13285	0.52	+0.3
2,909,600	+		HGI48_RS13285	0.52	+0.6
2,909,601	-		HGI48_RS13285	0.52	+1.3
2,909,611	+		HGI48_RS13285	0.55	+1.1
2,909,611	+		HGI48_RS13285	0.55	-0.3
2,909,612	-				-1.3
2,909,612	-		HGI48_RS13285	0.55	-1.1
2,909,644	+		HGI48_RS13285	0.63	+1.7
2,909,644	+				+1.5
2,909,644	+		HGI48_RS13285	0.63	-0.5
2,909,644	+		HGI48_RS13285	0.63	+0.3
2,909,645	-				+0.9
2,909,656	-		HGI48_RS13285	0.65	-0.2
2,909,702	+		HGI48_RS13285	0.76	+0.8
2,909,921	-				+0.1
2,909,949	-				-2.7
2,909,966	+				+0.3
2,909,967	-				-0.6