Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13020

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS13015 and HGI48_RS13020 are separated by 495 nucleotidesHGI48_RS13020 and HGI48_RS13025 are separated by 271 nucleotides HGI48_RS13015: HGI48_RS13015 - EAL domain-containing protein, at 2,849,292 to 2,850,026 _RS13015 HGI48_RS13020: HGI48_RS13020 - C40 family peptidase, at 2,850,522 to 2,850,986 _RS13020 HGI48_RS13025: HGI48_RS13025 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 2,851,258 to 2,852,031 _RS13025 Position (kb) 2850 2851Strain fitness (log2 ratio) -2 -1 0 1at 2849.564 kb on - strand, within HGI48_RS13015at 2849.634 kb on - strand, within HGI48_RS13015at 2849.817 kb on - strand, within HGI48_RS13015at 2849.971 kb on + strandat 2849.971 kb on + strandat 2849.972 kb on - strandat 2850.001 kb on + strandat 2850.026 kb on + strandat 2850.033 kb on - strandat 2850.044 kb on - strandat 2850.133 kb on + strandat 2850.142 kb on + strandat 2850.143 kb on - strandat 2850.143 kb on - strandat 2850.280 kb on - strandat 2850.280 kb on - strandat 2850.283 kb on + strandat 2850.288 kb on - strandat 2850.288 kb on - strandat 2850.288 kb on - strandat 2850.291 kb on + strandat 2850.304 kb on - strandat 2850.311 kb on - strandat 2850.311 kb on - strandat 2850.333 kb on - strandat 2850.334 kb on + strandat 2850.335 kb on - strandat 2850.497 kb on - strandat 2850.545 kb on - strandat 2850.545 kb on - strandat 2850.585 kb on - strand, within HGI48_RS13020at 2850.600 kb on - strand, within HGI48_RS13020at 2850.612 kb on - strand, within HGI48_RS13020at 2850.624 kb on - strand, within HGI48_RS13020at 2850.624 kb on - strand, within HGI48_RS13020at 2850.631 kb on + strand, within HGI48_RS13020at 2850.632 kb on - strand, within HGI48_RS13020at 2850.696 kb on + strand, within HGI48_RS13020at 2850.697 kb on - strandat 2850.697 kb on - strand, within HGI48_RS13020at 2850.787 kb on + strand, within HGI48_RS13020at 2850.810 kb on - strand, within HGI48_RS13020at 2850.833 kb on - strand, within HGI48_RS13020at 2850.912 kb on - strand, within HGI48_RS13020at 2850.948 kb on + strandat 2850.964 kb on - strandat 2850.964 kb on - strandat 2851.109 kb on - strandat 2851.109 kb on - strandat 2851.109 kb on - strandat 2851.109 kb on - strandat 2851.111 kb on + strandat 2851.111 kb on + strandat 2851.130 kb on + strandat 2851.173 kb on + strandat 2851.173 kb on + strandat 2851.174 kb on - strandat 2851.426 kb on - strand, within HGI48_RS13025at 2851.657 kb on - strand, within HGI48_RS13025at 2851.746 kb on - strand, within HGI48_RS13025at 2851.777 kb on - strand, within HGI48_RS13025at 2851.793 kb on + strand, within HGI48_RS13025at 2851.879 kb on + strand, within HGI48_RS13025at 2851.880 kb on - strand, within HGI48_RS13025at 2851.911 kb on + strand, within HGI48_RS13025at 2851.933 kb on - strand, within HGI48_RS13025at 2851.935 kb on + strand, within HGI48_RS13025at 2851.935 kb on + strand, within HGI48_RS13025at 2851.935 kb on + strand, within HGI48_RS13025at 2851.936 kb on - strand, within HGI48_RS13025at 2851.936 kb on - strand, within HGI48_RS13025at 2851.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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2,849,564 - HGI48_RS13015 0.37 +0.0
2,849,634 - HGI48_RS13015 0.47 -1.0
2,849,817 - HGI48_RS13015 0.71 +0.2
2,849,971 + -1.0
2,849,971 + +0.3
2,849,972 - +0.1
2,850,001 + +0.1
2,850,026 + -0.3
2,850,033 - -0.1
2,850,044 - -1.1
2,850,133 + +0.0
2,850,142 + -0.2
2,850,143 - -0.3
2,850,143 - +0.7
2,850,280 - -1.1
2,850,280 - -1.3
2,850,283 + -1.7
2,850,288 - -1.7
2,850,288 - +0.3
2,850,288 - +0.0
2,850,291 + +0.4
2,850,304 - -0.2
2,850,311 - +0.4
2,850,311 - +0.2
2,850,333 - -0.7
2,850,334 + -0.5
2,850,335 - -0.4
2,850,497 - -0.1
2,850,545 - -2.3
2,850,545 - -1.3
2,850,585 - HGI48_RS13020 0.14 -0.1
2,850,600 - HGI48_RS13020 0.17 -0.8
2,850,612 - HGI48_RS13020 0.19 +0.5
2,850,624 - HGI48_RS13020 0.22 -1.2
2,850,624 - HGI48_RS13020 0.22 +0.1
2,850,631 + HGI48_RS13020 0.23 +1.3
2,850,632 - HGI48_RS13020 0.24 +0.3
2,850,696 + HGI48_RS13020 0.37 +0.3
2,850,697 - -0.7
2,850,697 - HGI48_RS13020 0.38 +0.5
2,850,787 + HGI48_RS13020 0.57 +1.1
2,850,810 - HGI48_RS13020 0.62 -0.2
2,850,833 - HGI48_RS13020 0.67 +1.1
2,850,912 - HGI48_RS13020 0.84 +1.0
2,850,948 + -0.5
2,850,964 - -0.7
2,850,964 - +0.1
2,851,109 - +1.1
2,851,109 - +0.7
2,851,109 - -0.5
2,851,109 - +0.2
2,851,111 + +0.3
2,851,111 + -0.3
2,851,130 + +1.4
2,851,173 + -0.4
2,851,173 + -1.2
2,851,174 - -0.4
2,851,426 - HGI48_RS13025 0.22 -0.1
2,851,657 - HGI48_RS13025 0.52 +0.9
2,851,746 - HGI48_RS13025 0.63 -0.9
2,851,777 - HGI48_RS13025 0.67 -0.3
2,851,793 + HGI48_RS13025 0.69 -1.5
2,851,879 + HGI48_RS13025 0.80 -2.3
2,851,880 - HGI48_RS13025 0.80 -1.6
2,851,911 + HGI48_RS13025 0.84 +0.1
2,851,933 - HGI48_RS13025 0.87 +0.5
2,851,935 + HGI48_RS13025 0.87 -0.4
2,851,935 + HGI48_RS13025 0.87 +0.3
2,851,935 + HGI48_RS13025 0.87 -0.7
2,851,936 - HGI48_RS13025 0.88 +0.5
2,851,936 - HGI48_RS13025 0.88 -0.4
2,851,979 - -1.0

Or see this region's nucleotide sequence