Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS13015 and HGI48_RS13020 are separated by 495 nucleotides HGI48_RS13020 and HGI48_RS13025 are separated by 271 nucleotides
HGI48_RS13015: HGI48_RS13015 - EAL domain-containing protein, at 2,849,292 to 2,850,026
_RS13015
HGI48_RS13020: HGI48_RS13020 - C40 family peptidase, at 2,850,522 to 2,850,986
_RS13020
HGI48_RS13025: HGI48_RS13025 - vitamin B12 ABC transporter ATP-binding protein BtuD, at 2,851,258 to 2,852,031
_RS13025
Position (kb)
2850
2851 Strain fitness (log2 ratio)
-2
-1
0
1 at 2849.564 kb on - strand, within HGI48_RS13015 at 2849.634 kb on - strand, within HGI48_RS13015 at 2849.817 kb on - strand, within HGI48_RS13015 at 2849.971 kb on + strand at 2849.971 kb on + strand at 2849.972 kb on - strand at 2850.001 kb on + strand at 2850.026 kb on + strand at 2850.033 kb on - strand at 2850.044 kb on - strand at 2850.133 kb on + strand at 2850.142 kb on + strand at 2850.143 kb on - strand at 2850.143 kb on - strand at 2850.280 kb on - strand at 2850.280 kb on - strand at 2850.283 kb on + strand at 2850.288 kb on - strand at 2850.288 kb on - strand at 2850.288 kb on - strand at 2850.291 kb on + strand at 2850.304 kb on - strand at 2850.311 kb on - strand at 2850.311 kb on - strand at 2850.333 kb on - strand at 2850.334 kb on + strand at 2850.335 kb on - strand at 2850.497 kb on - strand at 2850.545 kb on - strand at 2850.545 kb on - strand at 2850.585 kb on - strand, within HGI48_RS13020 at 2850.600 kb on - strand, within HGI48_RS13020 at 2850.612 kb on - strand, within HGI48_RS13020 at 2850.624 kb on - strand, within HGI48_RS13020 at 2850.624 kb on - strand, within HGI48_RS13020 at 2850.631 kb on + strand, within HGI48_RS13020 at 2850.632 kb on - strand, within HGI48_RS13020 at 2850.696 kb on + strand, within HGI48_RS13020 at 2850.697 kb on - strand at 2850.697 kb on - strand, within HGI48_RS13020 at 2850.787 kb on + strand, within HGI48_RS13020 at 2850.810 kb on - strand, within HGI48_RS13020 at 2850.833 kb on - strand, within HGI48_RS13020 at 2850.912 kb on - strand, within HGI48_RS13020 at 2850.948 kb on + strand at 2850.964 kb on - strand at 2850.964 kb on - strand at 2851.109 kb on - strand at 2851.109 kb on - strand at 2851.109 kb on - strand at 2851.109 kb on - strand at 2851.111 kb on + strand at 2851.111 kb on + strand at 2851.130 kb on + strand at 2851.173 kb on + strand at 2851.173 kb on + strand at 2851.174 kb on - strand at 2851.426 kb on - strand, within HGI48_RS13025 at 2851.657 kb on - strand, within HGI48_RS13025 at 2851.746 kb on - strand, within HGI48_RS13025 at 2851.777 kb on - strand, within HGI48_RS13025 at 2851.793 kb on + strand, within HGI48_RS13025 at 2851.879 kb on + strand, within HGI48_RS13025 at 2851.880 kb on - strand, within HGI48_RS13025 at 2851.911 kb on + strand, within HGI48_RS13025 at 2851.933 kb on - strand, within HGI48_RS13025 at 2851.935 kb on + strand, within HGI48_RS13025 at 2851.935 kb on + strand, within HGI48_RS13025 at 2851.935 kb on + strand, within HGI48_RS13025 at 2851.936 kb on - strand, within HGI48_RS13025 at 2851.936 kb on - strand, within HGI48_RS13025 at 2851.979 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 2,849,564 - HGI48_RS13015 0.37 +0.0 2,849,634 - HGI48_RS13015 0.47 -1.0 2,849,817 - HGI48_RS13015 0.71 +0.2 2,849,971 + -1.0 2,849,971 + +0.3 2,849,972 - +0.1 2,850,001 + +0.1 2,850,026 + -0.3 2,850,033 - -0.1 2,850,044 - -1.1 2,850,133 + +0.0 2,850,142 + -0.2 2,850,143 - -0.3 2,850,143 - +0.7 2,850,280 - -1.1 2,850,280 - -1.3 2,850,283 + -1.7 2,850,288 - -1.7 2,850,288 - +0.3 2,850,288 - +0.0 2,850,291 + +0.4 2,850,304 - -0.2 2,850,311 - +0.4 2,850,311 - +0.2 2,850,333 - -0.7 2,850,334 + -0.5 2,850,335 - -0.4 2,850,497 - -0.1 2,850,545 - -2.3 2,850,545 - -1.3 2,850,585 - HGI48_RS13020 0.14 -0.1 2,850,600 - HGI48_RS13020 0.17 -0.8 2,850,612 - HGI48_RS13020 0.19 +0.5 2,850,624 - HGI48_RS13020 0.22 -1.2 2,850,624 - HGI48_RS13020 0.22 +0.1 2,850,631 + HGI48_RS13020 0.23 +1.3 2,850,632 - HGI48_RS13020 0.24 +0.3 2,850,696 + HGI48_RS13020 0.37 +0.3 2,850,697 - -0.7 2,850,697 - HGI48_RS13020 0.38 +0.5 2,850,787 + HGI48_RS13020 0.57 +1.1 2,850,810 - HGI48_RS13020 0.62 -0.2 2,850,833 - HGI48_RS13020 0.67 +1.1 2,850,912 - HGI48_RS13020 0.84 +1.0 2,850,948 + -0.5 2,850,964 - -0.7 2,850,964 - +0.1 2,851,109 - +1.1 2,851,109 - +0.7 2,851,109 - -0.5 2,851,109 - +0.2 2,851,111 + +0.3 2,851,111 + -0.3 2,851,130 + +1.4 2,851,173 + -0.4 2,851,173 + -1.2 2,851,174 - -0.4 2,851,426 - HGI48_RS13025 0.22 -0.1 2,851,657 - HGI48_RS13025 0.52 +0.9 2,851,746 - HGI48_RS13025 0.63 -0.9 2,851,777 - HGI48_RS13025 0.67 -0.3 2,851,793 + HGI48_RS13025 0.69 -1.5 2,851,879 + HGI48_RS13025 0.80 -2.3 2,851,880 - HGI48_RS13025 0.80 -1.6 2,851,911 + HGI48_RS13025 0.84 +0.1 2,851,933 - HGI48_RS13025 0.87 +0.5 2,851,935 + HGI48_RS13025 0.87 -0.4 2,851,935 + HGI48_RS13025 0.87 +0.3 2,851,935 + HGI48_RS13025 0.87 -0.7 2,851,936 - HGI48_RS13025 0.88 +0.5 2,851,936 - HGI48_RS13025 0.88 -0.4 2,851,979 - -1.0
Or see this region's nucleotide sequence