Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11310

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,463,882	+		HGI48_RS11305	0.64	-0.8
2,463,882	+				+1.5
2,463,882	+		HGI48_RS11305	0.64	-0.8
2,463,894	+		HGI48_RS11305	0.65	-1.6
2,463,895	-		HGI48_RS11305	0.65	-0.4
2,463,895	-		HGI48_RS11305	0.65	+0.9
2,463,919	+		HGI48_RS11305	0.67	-0.6
2,463,965	-		HGI48_RS11305	0.70	-0.6
2,464,068	+		HGI48_RS11305	0.76	-0.1
2,464,069	-		HGI48_RS11305	0.76	-0.2
2,464,069	-		HGI48_RS11305	0.76	-0.4
2,464,089	-		HGI48_RS11305	0.78	-0.2
2,464,122	+		HGI48_RS11305	0.80	-0.1
2,464,122	+		HGI48_RS11305	0.80	-0.0
2,464,122	+		HGI48_RS11305	0.80	-0.2
2,464,123	-		HGI48_RS11305	0.80	+0.9
2,464,149	+		HGI48_RS11305	0.81	-0.5
2,464,149	+		HGI48_RS11305	0.81	-0.8
2,464,153	+		HGI48_RS11305	0.82	-0.5
2,464,154	-		HGI48_RS11305	0.82	-1.8
2,464,154	-		HGI48_RS11305	0.82	-0.1
2,464,236	+		HGI48_RS11305	0.87	-2.4
2,464,236	+		HGI48_RS11305	0.87	-2.1
2,464,237	-		HGI48_RS11305	0.87	-0.8
2,464,237	-		HGI48_RS11305	0.87	-0.4
2,464,240	+				-1.4
2,464,240	+		HGI48_RS11305	0.87	-1.8
2,464,426	-				-0.2
2,464,428	+				+0.5
2,464,428	+				-0.1
2,464,429	-				+0.7
2,464,437	+				-1.8
2,464,437	+				-0.1
2,464,437	+				+0.3
2,464,438	-				-2.3
2,464,438	-				+0.0
2,464,438	-				-0.8
2,464,443	+				+0.9
2,464,443	+				-0.5
2,464,444	-				-0.7
2,464,459	+				+0.3
2,464,462	+				+0.0
2,464,463	-				-1.2
2,464,602	-				-0.6
2,464,658	-				+0.5
2,464,680	+				+0.4
2,464,680	+				-0.7
2,464,681	-				+0.2
2,464,780	+				-1.0
2,464,780	+				-0.2
2,464,780	+				+0.9
2,464,780	+				-0.1
2,464,780	+				-0.3
2,464,781	-				-0.3
2,464,781	-				-0.7
2,464,781	-				+0.1
2,464,781	-				-2.1
2,464,781	-				-0.8
2,464,781	-				-0.6
2,464,781	-				+0.1
2,464,781	-				-0.2
2,464,946	+		HGI48_RS11310	0.11	-2.3
2,464,946	+		HGI48_RS11310	0.11	-0.8
2,464,947	-		HGI48_RS11310	0.11	-2.8
2,464,947	-		HGI48_RS11310	0.11	-2.6
2,464,947	-		HGI48_RS11310	0.11	-2.3
2,464,948	+		HGI48_RS11310	0.11	-2.4
2,464,948	+		HGI48_RS11310	0.11	-0.4
2,464,948	+		HGI48_RS11310	0.11	-2.4
2,464,949	-		HGI48_RS11310	0.11	-1.1
2,464,949	-		HGI48_RS11310	0.11	-3.6
2,464,949	-		HGI48_RS11310	0.11	-0.1
2,464,949	-		HGI48_RS11310	0.11	-1.8
2,464,949	-		HGI48_RS11310	0.11	-0.6
2,464,949	-				-0.4
2,465,022	+		HGI48_RS11310	0.16	-2.3
2,465,023	-		HGI48_RS11310	0.16	-1.2
2,465,102	+		HGI48_RS11310	0.21	-3.6
2,465,349	-		HGI48_RS11310	0.37	-1.4
2,465,414	+		HGI48_RS11310	0.41	-0.6
2,465,480	+		HGI48_RS11310	0.45	-1.8
2,465,480	+				-0.8
2,465,480	+		HGI48_RS11310	0.45	-1.6
2,465,480	+		HGI48_RS11310	0.45	-2.4
2,465,480	+		HGI48_RS11310	0.45	-2.1
2,465,480	+		HGI48_RS11310	0.45	-1.5
2,465,480	+		HGI48_RS11310	0.45	-1.8
2,465,481	-		HGI48_RS11310	0.45	-2.6
2,465,481	-		HGI48_RS11310	0.45	-1.6
2,465,481	-				+0.2
2,465,481	-		HGI48_RS11310	0.45	-2.7
2,465,481	-		HGI48_RS11310	0.45	-1.0
2,465,481	-		HGI48_RS11310	0.45	+0.2
2,465,481	-		HGI48_RS11310	0.45	-1.4
2,465,481	-		HGI48_RS11310	0.45	-1.1
2,465,482	+		HGI48_RS11310	0.45	-1.6
2,465,482	+		HGI48_RS11310	0.45	+0.4
2,465,482	+				+1.2
2,465,482	+		HGI48_RS11310	0.45	-2.1
2,465,483	-		HGI48_RS11310	0.45	-0.8
2,465,483	-		HGI48_RS11310	0.45	+0.4
2,465,483	-		HGI48_RS11310	0.45	-2.4
2,465,483	-		HGI48_RS11310	0.45	-0.2
2,465,633	+		HGI48_RS11310	0.55	-2.6
2,465,633	+		HGI48_RS11310	0.55	-1.1
2,465,634	-		HGI48_RS11310	0.55	-1.9
2,465,651	+		HGI48_RS11310	0.56	-1.4
2,465,689	+		HGI48_RS11310	0.59	-2.7
2,465,690	-				-0.8
2,465,695	+		HGI48_RS11310	0.59	-3.0
2,465,696	-		HGI48_RS11310	0.59	-1.6
2,465,696	-		HGI48_RS11310	0.59	-2.5
2,465,841	-		HGI48_RS11310	0.68	-0.1
2,465,933	+		HGI48_RS11310	0.74	-2.4
2,465,934	-		HGI48_RS11310	0.74	-2.1
2,465,934	-				-1.4
2,466,018	+		HGI48_RS11310	0.80	-3.4
2,466,018	+		HGI48_RS11310	0.80	-1.8
2,466,018	+		HGI48_RS11310	0.80	-2.1
2,466,019	-		HGI48_RS11310	0.80	-3.1
2,466,019	-		HGI48_RS11310	0.80	-2.6
2,466,148	-		HGI48_RS11310	0.88	-0.6
2,466,282	+				-3.0
2,466,282	+				-1.1
2,466,283	-				+0.2
2,466,283	-				-2.3
2,466,294	+				-2.4
2,466,294	+				-1.4
2,466,294	+				-2.8
2,466,294	+				-2.1
2,466,295	-				-1.1
2,466,405	+				-0.4
2,466,406	-				-0.0
2,466,406	-				-0.6
2,466,411	+				-1.0
2,466,412	-				-0.6
2,466,534	+				+0.2
2,466,555	+				+0.7
2,466,564	+				+1.2
2,466,565	-				-0.4
2,466,567	+				-1.2
2,466,571	-				-1.7
2,466,618	+				-0.8
2,466,619	-				+0.5
2,466,642	+				-0.7
2,466,674	+				+2.0
2,466,674	+				-0.4
2,466,712	+				-0.8
2,466,787	+				+0.8
2,466,804	+				-1.1
2,466,807	+				+0.4
2,466,807	+				-0.6
2,466,807	+				+0.9
2,466,808	-				-1.1
2,466,808	-				-0.3
2,466,816	-				-0.0
2,466,860	+				-1.0
2,466,861	-				-0.8
2,466,861	-				-1.4
2,466,869	+				-1.8
2,466,869	+				-0.3
2,466,870	-				-2.1
2,466,870	-				-0.3
2,466,919	+				+0.2
2,466,933	+				-0.2
2,466,933	+				-1.6
2,466,933	+				-0.1
2,466,934	-				-0.1
2,466,934	-				+1.4
2,466,967	-				-0.8
2,466,967	-				-0.1
2,466,971	-				-2.1
2,466,971	-				+0.1
2,467,001	-				+0.3
2,467,058	+		HGI48_RS11315	0.15	-0.6
2,467,196	-		HGI48_RS11315	0.29	-0.9
2,467,220	-		HGI48_RS11315	0.32	-0.8