Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11030

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,391,496	+				-0.4
2,391,496	+				+0.9
2,391,497	-				-0.3
2,391,497	-				+0.0
2,391,499	+				-0.7
2,391,500	-				-0.5
2,391,561	+		HGI48_RS11025	0.13	+0.3
2,391,561	+		HGI48_RS11025	0.13	-1.8
2,391,562	-		HGI48_RS11025	0.14	-0.2
2,391,646	+		HGI48_RS11025	0.23	-1.1
2,391,646	+		HGI48_RS11025	0.23	-0.5
2,391,646	+		HGI48_RS11025	0.23	-1.1
2,391,646	+		HGI48_RS11025	0.23	+0.2
2,391,647	-		HGI48_RS11025	0.24	+0.6
2,391,648	+		HGI48_RS11025	0.24	-2.0
2,391,648	+		HGI48_RS11025	0.24	-0.2
2,391,648	+		HGI48_RS11025	0.24	+0.5
2,391,648	+		HGI48_RS11025	0.24	+0.2
2,391,648	+				+1.4
2,391,648	+		HGI48_RS11025	0.24	-1.1
2,391,648	+		HGI48_RS11025	0.24	+0.8
2,391,648	+				+2.0
2,391,649	-		HGI48_RS11025	0.24	+0.2
2,391,649	-		HGI48_RS11025	0.24	-1.8
2,391,649	-		HGI48_RS11025	0.24	-0.1
2,391,649	-		HGI48_RS11025	0.24	+0.4
2,391,649	-		HGI48_RS11025	0.24	-0.8
2,391,649	-		HGI48_RS11025	0.24	+0.0
2,391,649	-		HGI48_RS11025	0.24	-0.5
2,391,667	+				+0.9
2,391,667	+		HGI48_RS11025	0.26	-0.4
2,391,668	-		HGI48_RS11025	0.26	-1.8
2,391,668	-		HGI48_RS11025	0.26	+0.5
2,391,668	-				+1.5
2,391,671	+		HGI48_RS11025	0.26	-0.7
2,391,671	+		HGI48_RS11025	0.26	-1.8
2,391,697	+		HGI48_RS11025	0.29	-0.0
2,391,697	+		HGI48_RS11025	0.29	-1.9
2,391,697	+		HGI48_RS11025	0.29	-0.8
2,391,698	-		HGI48_RS11025	0.29	-0.1
2,391,698	-		HGI48_RS11025	0.29	-1.0
2,391,798	+		HGI48_RS11025	0.41	-1.8
2,391,835	+		HGI48_RS11025	0.45	-0.3
2,391,867	+				+0.9
2,391,877	+		HGI48_RS11025	0.50	+0.2
2,391,879	+		HGI48_RS11025	0.51	-1.1
2,391,879	+		HGI48_RS11025	0.51	-0.1
2,391,880	-				-1.4
2,391,883	+		HGI48_RS11025	0.51	-1.1
2,391,884	-		HGI48_RS11025	0.51	+0.2
2,391,943	+		HGI48_RS11025	0.58	-0.4
2,392,001	+		HGI48_RS11025	0.65	-2.3
2,392,023	+		HGI48_RS11025	0.67	+0.6
2,392,023	+		HGI48_RS11025	0.67	-0.1
2,392,023	+		HGI48_RS11025	0.67	-0.5
2,392,027	+		HGI48_RS11025	0.68	+0.1
2,392,027	+		HGI48_RS11025	0.68	-0.5
2,392,027	+		HGI48_RS11025	0.68	-1.2
2,392,027	+		HGI48_RS11025	0.68	+1.7
2,392,027	+		HGI48_RS11025	0.68	-1.1
2,392,027	+		HGI48_RS11025	0.68	-0.5
2,392,027	+		HGI48_RS11025	0.68	+0.7
2,392,028	-		HGI48_RS11025	0.68	+0.2
2,392,028	-		HGI48_RS11025	0.68	-0.2
2,392,028	-				+1.4
2,392,029	+		HGI48_RS11025	0.68	-0.3
2,392,029	+				-0.4
2,392,030	-		HGI48_RS11025	0.68	-0.1
2,392,040	+		HGI48_RS11025	0.69	-1.0
2,392,040	+		HGI48_RS11025	0.69	-1.4
2,392,041	-		HGI48_RS11025	0.70	+0.5
2,392,115	+		HGI48_RS11025	0.78	-0.8
2,392,115	+		HGI48_RS11025	0.78	-1.2
2,392,116	-		HGI48_RS11025	0.78	-0.3
2,392,116	-				+0.6
2,392,120	+		HGI48_RS11025	0.79	-0.1
2,392,120	+		HGI48_RS11025	0.79	+0.5
2,392,120	+		HGI48_RS11025	0.79	+0.0
2,392,120	+		HGI48_RS11025	0.79	+0.7
2,392,121	-				+0.6
2,392,121	-		HGI48_RS11025	0.79	+0.7
2,392,121	-		HGI48_RS11025	0.79	-0.2
2,392,121	-		HGI48_RS11025	0.79	-1.3
2,392,121	-		HGI48_RS11025	0.79	+0.8
2,392,121	-		HGI48_RS11025	0.79	+0.5
2,392,123	-		HGI48_RS11025	0.79	+0.8
2,392,123	-		HGI48_RS11025	0.79	-1.3
2,392,123	-		HGI48_RS11025	0.79	+0.7
2,392,134	+		HGI48_RS11025	0.80	-0.8
2,392,240	-				+1.1
2,392,240	-				+0.2
2,392,262	-				-0.3
2,392,279	+				-1.1
2,392,301	-				+0.6
2,392,302	+				-0.2
2,392,302	+				-0.4
2,392,303	-				+1.8
2,392,303	-				-1.1
2,392,303	-				+1.2
2,392,303	-				+0.2
2,392,342	+				-0.1
2,392,343	-				-0.8
2,392,343	-				+0.7
2,392,363	+				-1.4
2,392,363	+				-0.0
2,392,389	+				+0.3
2,392,413	+				-0.1
2,392,421	+				+0.9
2,392,421	+				-0.6
2,392,421	+				+0.4
2,392,422	-				-1.9
2,392,422	-				+0.2
2,392,426	-				+1.1
2,392,459	-				+0.2
2,393,657	+				-0.3
2,393,657	+				-0.0
2,393,674	+				-0.5
2,393,674	+				+0.3
2,393,674	+				+0.2
2,393,674	+				+0.6
2,393,674	+				-1.0
2,393,675	-				-0.9
2,393,676	+				+0.2
2,393,676	+				+0.6
2,393,677	-				-3.0
2,393,695	+				-0.3
2,393,696	-				-0.5
2,393,740	+				+1.7
2,393,764	+				-0.2
2,393,789	-				+1.2
2,393,816	+				-2.1
2,393,817	-				+0.0
2,393,862	-				-0.5
2,393,886	+				+1.1
2,393,887	-				-1.4
2,393,986	-				-1.8
2,393,996	-				-2.4
2,394,017	+				-1.2
2,394,041	+				-1.5
2,394,041	+				+0.9
2,394,042	-				-0.7
2,394,045	+				-0.6
2,394,045	+				-0.7
2,394,046	-				-0.3
2,394,046	-				+0.6
2,394,084	+				+0.8
2,394,127	-				-0.5
2,394,127	-				+0.4
2,394,143	-				+0.6
2,394,205	+				-0.2
2,394,208	+				-0.2
2,394,208	+				-1.0
2,394,208	+				-0.4
2,394,224	+				-0.6
2,394,225	-				-1.1
2,394,225	-				-0.8
2,394,227	+				-1.1
2,394,227	+				-1.0
2,394,228	-				-0.2
2,394,276	-				-0.4
2,394,276	-				+1.0
2,394,290	+				-1.8
2,394,290	+				-0.5
2,394,291	-				+3.0
2,394,293	+				-0.2
2,394,294	-				+1.4
2,394,316	-				+1.4
2,394,381	-		HGI48_RS11035	0.14	-0.5
2,394,389	+		HGI48_RS11035	0.15	-0.8
2,394,393	+		HGI48_RS11035	0.16	-1.0
2,394,428	-		HGI48_RS11035	0.22	-1.1
2,394,430	-		HGI48_RS11035	0.22	+0.3
2,394,470	+		HGI48_RS11035	0.29	+0.5
2,394,470	+		HGI48_RS11035	0.29	+1.2
2,394,471	-				+1.8
2,394,471	-		HGI48_RS11035	0.29	-2.4
2,394,471	-		HGI48_RS11035	0.29	-2.4
2,394,477	-		HGI48_RS11035	0.30	-0.4
2,394,477	-		HGI48_RS11035	0.30	-0.5
2,394,477	-		HGI48_RS11035	0.30	-2.1
2,394,477	-		HGI48_RS11035	0.30	-0.2
2,394,535	+		HGI48_RS11035	0.39	-0.9
2,394,536	-		HGI48_RS11035	0.40	-0.8
2,394,536	-		HGI48_RS11035	0.40	+1.0
2,394,542	-		HGI48_RS11035	0.41	+0.5
2,394,542	-		HGI48_RS11035	0.41	-0.2
2,394,551	+				-1.4
2,394,569	+		HGI48_RS11035	0.45	-0.2
2,394,569	+		HGI48_RS11035	0.45	+0.2
2,394,569	+		HGI48_RS11035	0.45	-0.2
2,394,569	+		HGI48_RS11035	0.45	-0.7
2,394,569	+		HGI48_RS11035	0.45	-0.6
2,394,569	+		HGI48_RS11035	0.45	+0.8
2,394,570	-		HGI48_RS11035	0.45	-0.1
2,394,570	-				+0.9
2,394,570	-		HGI48_RS11035	0.45	+0.2
2,394,570	-		HGI48_RS11035	0.45	+0.2
2,394,570	-		HGI48_RS11035	0.45	+0.8