Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11015

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,388,577	+				+0.5
2,388,578	-				-0.8
2,388,646	-				-0.8
2,388,684	+				-0.8
2,388,685	-				-0.2
2,388,685	-				+0.6
2,388,717	+				+1.0
2,388,718	-				+0.1
2,388,740	+		HGI48_RS11010	0.10	-0.8
2,388,741	-		HGI48_RS11010	0.10	+0.0
2,388,741	-		HGI48_RS11010	0.10	-0.1
2,388,741	-				-1.4
2,388,761	-		HGI48_RS11010	0.13	-1.2
2,388,761	-		HGI48_RS11010	0.13	+1.0
2,388,763	+		HGI48_RS11010	0.13	-0.5
2,388,764	-		HGI48_RS11010	0.13	+1.0
2,388,764	-		HGI48_RS11010	0.13	-0.3
2,388,774	+		HGI48_RS11010	0.14	+0.2
2,388,774	+		HGI48_RS11010	0.14	-1.6
2,388,775	-		HGI48_RS11010	0.14	+0.8
2,388,807	+		HGI48_RS11010	0.18	-2.8
2,388,808	-		HGI48_RS11010	0.18	-0.1
2,388,919	-		HGI48_RS11010	0.30	-2.1
2,388,925	-		HGI48_RS11010	0.31	+0.5
2,388,925	-		HGI48_RS11010	0.31	+1.1
2,388,927	+		HGI48_RS11010	0.31	-1.4
2,388,969	+		HGI48_RS11010	0.36	-1.4
2,388,969	+				-1.4
2,388,970	-		HGI48_RS11010	0.36	-1.0
2,388,975	+		HGI48_RS11010	0.36	+0.5
2,388,975	+		HGI48_RS11010	0.36	+0.7
2,389,070	+		HGI48_RS11010	0.47	-3.0
2,389,070	+		HGI48_RS11010	0.47	-0.5
2,389,071	-		HGI48_RS11010	0.47	+1.3
2,389,103	+		HGI48_RS11010	0.51	-0.1
2,389,176	+		HGI48_RS11010	0.59	-0.1
2,389,177	-		HGI48_RS11010	0.59	-0.9
2,389,189	+		HGI48_RS11010	0.60	-0.6
2,389,189	+		HGI48_RS11010	0.60	+0.3
2,389,190	-		HGI48_RS11010	0.61	-1.2
2,389,213	-				+1.2
2,389,221	+		HGI48_RS11010	0.64	+0.2
2,389,236	+		HGI48_RS11010	0.66	-0.3
2,389,237	-		HGI48_RS11010	0.66	-1.4
2,389,247	+		HGI48_RS11010	0.67	-1.0
2,389,253	+		HGI48_RS11010	0.68	+0.2
2,389,253	+		HGI48_RS11010	0.68	+0.4
2,389,253	+		HGI48_RS11010	0.68	-0.4
2,389,254	-		HGI48_RS11010	0.68	-1.2
2,389,281	-				+0.8
2,389,314	+		HGI48_RS11010	0.74	+0.1
2,389,314	+		HGI48_RS11010	0.74	-2.1
2,389,322	+		HGI48_RS11010	0.75	+0.2
2,389,343	-		HGI48_RS11010	0.78	-0.0
2,389,343	-		HGI48_RS11010	0.78	-0.8
2,389,375	-		HGI48_RS11010	0.81	+0.3
2,389,375	-		HGI48_RS11010	0.81	-0.8
2,389,377	+				+2.0
2,389,378	-				+0.2
2,389,392	-		HGI48_RS11010	0.83	-1.1
2,389,450	+		HGI48_RS11010	0.90	-0.5
2,389,471	-				-0.5
2,389,494	+				-1.5
2,389,516	-				+1.2
2,389,543	-				-0.6
2,389,545	+				-0.5
2,389,546	-				+0.5
2,389,635	+				+0.6
2,389,778	-		HGI48_RS11015	0.23	-0.8
2,389,817	-		HGI48_RS11015	0.27	-0.4
2,389,838	+		HGI48_RS11015	0.29	-2.4
2,389,858	+				-1.4
2,389,929	+		HGI48_RS11015	0.39	-1.4
2,389,940	+		HGI48_RS11015	0.40	-1.4
2,389,941	-		HGI48_RS11015	0.40	+0.2
2,390,029	+		HGI48_RS11015	0.49	+0.1
2,390,030	-		HGI48_RS11015	0.49	-0.1
2,390,030	-		HGI48_RS11015	0.49	-0.4
2,390,030	-		HGI48_RS11015	0.49	-0.4
2,390,101	-		HGI48_RS11015	0.56	-2.6
2,390,143	+		HGI48_RS11015	0.61	-0.4
2,390,143	+		HGI48_RS11015	0.61	+1.3
2,390,143	+				+0.6
2,390,144	-		HGI48_RS11015	0.61	+0.4
2,390,148	+		HGI48_RS11015	0.61	+0.0
2,390,250	+		HGI48_RS11015	0.72	+0.8
2,390,251	-		HGI48_RS11015	0.72	-0.2
2,390,251	-		HGI48_RS11015	0.72	+0.7
2,390,260	+		HGI48_RS11015	0.73	-0.5
2,390,260	+		HGI48_RS11015	0.73	-0.2
2,390,261	-		HGI48_RS11015	0.73	+1.4
2,390,261	-		HGI48_RS11015	0.73	-2.1
2,390,271	+		HGI48_RS11015	0.74	-1.9
2,390,272	-		HGI48_RS11015	0.74	-0.5
2,390,273	+		HGI48_RS11015	0.74	-0.8
2,390,273	+		HGI48_RS11015	0.74	-0.8
2,390,274	-		HGI48_RS11015	0.74	+0.2
2,390,284	+		HGI48_RS11015	0.75	+1.6
2,390,285	-		HGI48_RS11015	0.75	+0.5
2,390,293	+				+1.9
2,390,294	-		HGI48_RS11015	0.76	+0.4
2,390,294	-				+2.5
2,390,306	-		HGI48_RS11015	0.78	-0.1
2,390,325	+		HGI48_RS11015	0.80	+1.6
2,390,344	-		HGI48_RS11015	0.82	-2.4
2,390,350	+		HGI48_RS11015	0.82	-0.5
2,390,351	-		HGI48_RS11015	0.82	-1.2
2,390,367	+		HGI48_RS11015	0.84	+0.4
2,390,367	+		HGI48_RS11015	0.84	-0.1
2,390,367	+		HGI48_RS11015	0.84	+0.7
2,390,368	-		HGI48_RS11015	0.84	+0.4
2,390,368	-		HGI48_RS11015	0.84	-1.8
2,390,368	-		HGI48_RS11015	0.84	-3.3
2,390,368	-		HGI48_RS11015	0.84	-0.3
2,390,368	-		HGI48_RS11015	0.84	-1.0
2,390,369	+		HGI48_RS11015	0.84	-0.5
2,390,370	-		HGI48_RS11015	0.84	-2.1
2,390,388	+		HGI48_RS11015	0.86	-0.6
2,390,464	+				+0.5
2,390,464	+				-0.2
2,390,464	+				-0.2
2,390,464	+				-0.2
2,390,464	+				+0.4
2,390,464	+				+0.2
2,390,464	+				-0.5
2,390,464	+				+0.8
2,390,464	+				-3.0
2,390,464	+				+0.6
2,390,465	-				-0.8
2,390,465	-				+1.0
2,390,465	-				+0.9
2,390,465	-				+0.1
2,390,465	-				-0.5
2,390,465	-				+0.2
2,390,466	+				+0.8
2,390,467	-				-1.2
2,390,467	-				-1.8
2,390,467	-				+0.8
2,390,467	-				+0.2
2,390,467	-				+0.6
2,390,467	-				+0.6
2,390,467	-				-0.5
2,390,467	-				+1.4
2,390,467	-				-0.9
2,390,467	-				+0.0
2,390,467	-				-1.6
2,390,467	-				+1.7
2,390,514	-				-0.4
2,390,536	+				-0.7
2,390,564	-				+0.5
2,390,564	-				-1.1
2,390,575	+				+0.2
2,390,576	-				-0.8
2,390,576	-				+0.2
2,390,611	+				+1.2
2,390,612	-				-0.7
2,390,638	+				-0.2
2,390,642	+				+0.5
2,390,642	+				+0.5
2,390,643	-				-0.2
2,390,646	+				-1.1
2,390,647	-				-0.4
2,390,717	-				-0.6
2,390,733	-				-2.4
2,390,815	-				-0.1
2,390,841	+				+0.4
2,390,844	+				+0.5
2,390,844	+				-0.2
2,390,844	+				-1.0
2,390,844	+				-0.6
2,390,844	+				+0.4
2,390,849	+				+0.2
2,390,875	-				-1.0
2,390,875	-				+0.4
2,390,934	+				+0.2
2,390,934	+				+0.2
2,390,934	+				+1.4
2,390,935	-				-0.3
2,390,956	-				-1.4
2,390,959	-				+1.9
2,390,959	-				+1.4
2,390,959	-				-2.6
2,391,000	-				-0.8
2,391,011	+				-1.5
2,391,015	+				-1.4
2,391,015	+				-0.5
2,391,042	+				-1.0
2,391,048	+				+0.6
2,391,049	-				-1.1
2,391,184	+		HGI48_RS11020	0.78	+0.2
2,391,184	+				+0.2
2,391,184	+		HGI48_RS11020	0.78	-1.0
2,391,189	+		HGI48_RS11020	0.81	-0.9
2,391,189	+		HGI48_RS11020	0.81	+0.8
2,391,190	-		HGI48_RS11020	0.82	-1.4
2,391,223	+				-0.2
2,391,223	+				-0.2
2,391,223	+				+1.0
2,391,223	+				+0.2
2,391,223	+				-0.8
2,391,223	+				+1.2
2,391,224	-				-0.2
2,391,224	-				+0.2
2,391,224	-				+0.5
2,391,224	-				-0.2
2,391,224	-				-0.6
2,391,274	+				-0.0
2,391,274	+				+0.2
2,391,275	-				+1.1
2,391,300	+				+2.9
2,391,312	-				+0.6
2,391,323	+				+0.8
2,391,324	-				-0.2
2,391,324	-				+0.4
2,391,326	+				+0.6
2,391,327	-				-0.5
2,391,327	-				+1.6
2,391,327	-				-0.1
2,391,331	+				-1.0
2,391,331	+				-0.0
2,391,332	-				+0.8
2,391,334	-				-0.1
2,391,349	-				-0.5
2,391,394	+				-1.8
2,391,430	-				-1.4
2,391,447	+				-1.4
2,391,448	-				-0.5
2,391,471	+				-0.1
2,391,496	+				-0.4
2,391,496	+				+0.9
2,391,497	-				-0.3
2,391,497	-				+0.0
2,391,499	+				-0.7
2,391,500	-				-0.5