Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10920

Experiment: Upstate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS10915 and HGI48_RS10920 are separated by 511 nucleotidesHGI48_RS10920 and HGI48_RS10925 are separated by 123 nucleotides HGI48_RS10915: HGI48_RS10915 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 2,367,557 to 2,369,089 _RS10915 HGI48_RS10920: HGI48_RS10920 - DUF1471 domain-containing protein, at 2,369,601 to 2,370,551 _RS10920 HGI48_RS10925: HGI48_RS10925 - 3-deoxy-8-phosphooctulonate synthase, at 2,370,675 to 2,371,529 _RS10925 Position (kb) 2369 2370 2371Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2368.712 kb on - strand, within HGI48_RS10915at 2368.712 kb on - strand, within HGI48_RS10915at 2368.941 kb on + strandat 2368.941 kb on + strandat 2369.083 kb on + strandat 2369.084 kb on - strandat 2369.132 kb on - strandat 2369.189 kb on + strandat 2369.201 kb on + strandat 2369.202 kb on - strandat 2369.222 kb on - strandat 2369.321 kb on - strandat 2369.327 kb on - strandat 2369.329 kb on + strandat 2369.383 kb on - strandat 2369.404 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.567 kb on + strandat 2369.568 kb on - strandat 2369.568 kb on - strandat 2369.568 kb on - strandat 2369.568 kb on - strandat 2369.572 kb on - strandat 2369.615 kb on + strandat 2369.644 kb on + strandat 2369.644 kb on + strandat 2369.645 kb on - strandat 2369.645 kb on - strandat 2369.679 kb on - strandat 2369.717 kb on + strand, within HGI48_RS10920at 2369.718 kb on - strand, within HGI48_RS10920at 2369.749 kb on - strand, within HGI48_RS10920at 2369.806 kb on - strand, within HGI48_RS10920at 2369.806 kb on - strand, within HGI48_RS10920at 2369.862 kb on + strand, within HGI48_RS10920at 2369.863 kb on - strand, within HGI48_RS10920at 2369.867 kb on + strand, within HGI48_RS10920at 2369.868 kb on - strand, within HGI48_RS10920at 2369.948 kb on - strandat 2369.962 kb on - strand, within HGI48_RS10920at 2370.057 kb on + strand, within HGI48_RS10920at 2370.057 kb on + strand, within HGI48_RS10920at 2370.058 kb on - strand, within HGI48_RS10920at 2370.058 kb on - strand, within HGI48_RS10920at 2370.058 kb on - strand, within HGI48_RS10920at 2370.081 kb on - strand, within HGI48_RS10920at 2370.081 kb on - strand, within HGI48_RS10920at 2370.224 kb on + strandat 2370.269 kb on + strand, within HGI48_RS10920at 2370.270 kb on - strand, within HGI48_RS10920at 2370.278 kb on + strand, within HGI48_RS10920at 2370.320 kb on + strand, within HGI48_RS10920at 2370.320 kb on + strand, within HGI48_RS10920at 2370.321 kb on - strand, within HGI48_RS10920at 2370.321 kb on - strand, within HGI48_RS10920at 2370.402 kb on - strand, within HGI48_RS10920at 2370.402 kb on - strand, within HGI48_RS10920at 2370.402 kb on - strand, within HGI48_RS10920at 2370.402 kb on - strandat 2370.420 kb on - strand, within HGI48_RS10920at 2370.483 kb on + strandat 2370.522 kb on + strandat 2370.522 kb on + strandat 2370.522 kb on + strandat 2370.523 kb on - strandat 2370.523 kb on - strandat 2370.523 kb on - strandat 2370.543 kb on + strandat 2370.544 kb on - strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.549 kb on + strandat 2370.599 kb on - strandat 2370.614 kb on - strandat 2370.614 kb on - strandat 2370.618 kb on - strandat 2370.631 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
remove
2,368,712 - HGI48_RS10915 0.75 +0.6
2,368,712 - HGI48_RS10915 0.75 -1.2
2,368,941 + -1.4
2,368,941 + +0.2
2,369,083 + +0.3
2,369,084 - +0.0
2,369,132 - +0.4
2,369,189 + +0.1
2,369,201 + -3.0
2,369,202 - -1.1
2,369,222 - -0.0
2,369,321 - -0.7
2,369,327 - -2.4
2,369,329 + -1.3
2,369,383 - -0.8
2,369,404 + -0.4
2,369,567 + +0.9
2,369,567 + +1.2
2,369,567 + +0.2
2,369,567 + +0.5
2,369,567 + +0.2
2,369,567 + -0.8
2,369,567 + -0.2
2,369,567 + -0.8
2,369,567 + +0.2
2,369,567 + -2.5
2,369,568 - -0.5
2,369,568 - -0.4
2,369,568 - +1.1
2,369,568 - +1.8
2,369,572 - -0.2
2,369,615 + +1.2
2,369,644 + +0.7
2,369,644 + +0.2
2,369,645 - -1.8
2,369,645 - -0.6
2,369,679 - +1.4
2,369,717 + HGI48_RS10920 0.12 -1.1
2,369,718 - HGI48_RS10920 0.12 -1.8
2,369,749 - HGI48_RS10920 0.16 +0.4
2,369,806 - HGI48_RS10920 0.22 -0.1
2,369,806 - HGI48_RS10920 0.22 -0.0
2,369,862 + HGI48_RS10920 0.27 +0.4
2,369,863 - HGI48_RS10920 0.28 -0.2
2,369,867 + HGI48_RS10920 0.28 +0.5
2,369,868 - HGI48_RS10920 0.28 -1.8
2,369,948 - +0.8
2,369,962 - HGI48_RS10920 0.38 +1.5
2,370,057 + HGI48_RS10920 0.48 +0.4
2,370,057 + HGI48_RS10920 0.48 +0.8
2,370,058 - HGI48_RS10920 0.48 -0.3
2,370,058 - HGI48_RS10920 0.48 +1.2
2,370,058 - HGI48_RS10920 0.48 +1.1
2,370,081 - HGI48_RS10920 0.50 -1.6
2,370,081 - HGI48_RS10920 0.50 -1.5
2,370,224 + +1.2
2,370,269 + HGI48_RS10920 0.70 -0.5
2,370,270 - HGI48_RS10920 0.70 +0.1
2,370,278 + HGI48_RS10920 0.71 -1.8
2,370,320 + HGI48_RS10920 0.76 -1.2
2,370,320 + HGI48_RS10920 0.76 +0.9
2,370,321 - HGI48_RS10920 0.76 +0.1
2,370,321 - HGI48_RS10920 0.76 +0.5
2,370,402 - HGI48_RS10920 0.84 +0.4
2,370,402 - HGI48_RS10920 0.84 +0.2
2,370,402 - HGI48_RS10920 0.84 +0.6
2,370,402 - -1.4
2,370,420 - HGI48_RS10920 0.86 -0.7
2,370,483 + +1.2
2,370,522 + +0.5
2,370,522 + -0.6
2,370,522 + +0.2
2,370,523 - -0.6
2,370,523 - +0.2
2,370,523 - -0.8
2,370,543 + -1.6
2,370,544 - +0.7
2,370,549 + +0.6
2,370,549 + -0.9
2,370,549 + +0.5
2,370,599 - +0.9
2,370,614 - +1.4
2,370,614 - +0.9
2,370,618 - +0.4
2,370,631 + +0.5

Or see this region's nucleotide sequence