Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS10915 and HGI48_RS10920 are separated by 511 nucleotides HGI48_RS10920 and HGI48_RS10925 are separated by 123 nucleotides
HGI48_RS10915: HGI48_RS10915 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 2,367,557 to 2,369,089
_RS10915
HGI48_RS10920: HGI48_RS10920 - DUF1471 domain-containing protein, at 2,369,601 to 2,370,551
_RS10920
HGI48_RS10925: HGI48_RS10925 - 3-deoxy-8-phosphooctulonate synthase, at 2,370,675 to 2,371,529
_RS10925
Position (kb)
2369
2370
2371 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2368.712 kb on - strand, within HGI48_RS10915 at 2368.712 kb on - strand, within HGI48_RS10915 at 2368.941 kb on + strand at 2368.941 kb on + strand at 2369.083 kb on + strand at 2369.084 kb on - strand at 2369.132 kb on - strand at 2369.189 kb on + strand at 2369.201 kb on + strand at 2369.202 kb on - strand at 2369.222 kb on - strand at 2369.321 kb on - strand at 2369.327 kb on - strand at 2369.329 kb on + strand at 2369.383 kb on - strand at 2369.404 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.567 kb on + strand at 2369.568 kb on - strand at 2369.568 kb on - strand at 2369.568 kb on - strand at 2369.568 kb on - strand at 2369.572 kb on - strand at 2369.615 kb on + strand at 2369.644 kb on + strand at 2369.644 kb on + strand at 2369.645 kb on - strand at 2369.645 kb on - strand at 2369.679 kb on - strand at 2369.717 kb on + strand, within HGI48_RS10920 at 2369.718 kb on - strand, within HGI48_RS10920 at 2369.749 kb on - strand, within HGI48_RS10920 at 2369.806 kb on - strand, within HGI48_RS10920 at 2369.806 kb on - strand, within HGI48_RS10920 at 2369.862 kb on + strand, within HGI48_RS10920 at 2369.863 kb on - strand, within HGI48_RS10920 at 2369.867 kb on + strand, within HGI48_RS10920 at 2369.868 kb on - strand, within HGI48_RS10920 at 2369.948 kb on - strand at 2369.962 kb on - strand, within HGI48_RS10920 at 2370.057 kb on + strand, within HGI48_RS10920 at 2370.057 kb on + strand, within HGI48_RS10920 at 2370.058 kb on - strand, within HGI48_RS10920 at 2370.058 kb on - strand, within HGI48_RS10920 at 2370.058 kb on - strand, within HGI48_RS10920 at 2370.081 kb on - strand, within HGI48_RS10920 at 2370.081 kb on - strand, within HGI48_RS10920 at 2370.224 kb on + strand at 2370.269 kb on + strand, within HGI48_RS10920 at 2370.270 kb on - strand, within HGI48_RS10920 at 2370.278 kb on + strand, within HGI48_RS10920 at 2370.320 kb on + strand, within HGI48_RS10920 at 2370.320 kb on + strand, within HGI48_RS10920 at 2370.321 kb on - strand, within HGI48_RS10920 at 2370.321 kb on - strand, within HGI48_RS10920 at 2370.402 kb on - strand, within HGI48_RS10920 at 2370.402 kb on - strand, within HGI48_RS10920 at 2370.402 kb on - strand, within HGI48_RS10920 at 2370.402 kb on - strand at 2370.420 kb on - strand, within HGI48_RS10920 at 2370.483 kb on + strand at 2370.522 kb on + strand at 2370.522 kb on + strand at 2370.522 kb on + strand at 2370.523 kb on - strand at 2370.523 kb on - strand at 2370.523 kb on - strand at 2370.543 kb on + strand at 2370.544 kb on - strand at 2370.549 kb on + strand at 2370.549 kb on + strand at 2370.549 kb on + strand at 2370.599 kb on - strand at 2370.614 kb on - strand at 2370.614 kb on - strand at 2370.618 kb on - strand at 2370.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 2,368,712 - HGI48_RS10915 0.75 +0.6 2,368,712 - HGI48_RS10915 0.75 -1.2 2,368,941 + -1.4 2,368,941 + +0.2 2,369,083 + +0.3 2,369,084 - +0.0 2,369,132 - +0.4 2,369,189 + +0.1 2,369,201 + -3.0 2,369,202 - -1.1 2,369,222 - -0.0 2,369,321 - -0.7 2,369,327 - -2.4 2,369,329 + -1.3 2,369,383 - -0.8 2,369,404 + -0.4 2,369,567 + +0.9 2,369,567 + +1.2 2,369,567 + +0.2 2,369,567 + +0.5 2,369,567 + +0.2 2,369,567 + -0.8 2,369,567 + -0.2 2,369,567 + -0.8 2,369,567 + +0.2 2,369,567 + -2.5 2,369,568 - -0.5 2,369,568 - -0.4 2,369,568 - +1.1 2,369,568 - +1.8 2,369,572 - -0.2 2,369,615 + +1.2 2,369,644 + +0.7 2,369,644 + +0.2 2,369,645 - -1.8 2,369,645 - -0.6 2,369,679 - +1.4 2,369,717 + HGI48_RS10920 0.12 -1.1 2,369,718 - HGI48_RS10920 0.12 -1.8 2,369,749 - HGI48_RS10920 0.16 +0.4 2,369,806 - HGI48_RS10920 0.22 -0.1 2,369,806 - HGI48_RS10920 0.22 -0.0 2,369,862 + HGI48_RS10920 0.27 +0.4 2,369,863 - HGI48_RS10920 0.28 -0.2 2,369,867 + HGI48_RS10920 0.28 +0.5 2,369,868 - HGI48_RS10920 0.28 -1.8 2,369,948 - +0.8 2,369,962 - HGI48_RS10920 0.38 +1.5 2,370,057 + HGI48_RS10920 0.48 +0.4 2,370,057 + HGI48_RS10920 0.48 +0.8 2,370,058 - HGI48_RS10920 0.48 -0.3 2,370,058 - HGI48_RS10920 0.48 +1.2 2,370,058 - HGI48_RS10920 0.48 +1.1 2,370,081 - HGI48_RS10920 0.50 -1.6 2,370,081 - HGI48_RS10920 0.50 -1.5 2,370,224 + +1.2 2,370,269 + HGI48_RS10920 0.70 -0.5 2,370,270 - HGI48_RS10920 0.70 +0.1 2,370,278 + HGI48_RS10920 0.71 -1.8 2,370,320 + HGI48_RS10920 0.76 -1.2 2,370,320 + HGI48_RS10920 0.76 +0.9 2,370,321 - HGI48_RS10920 0.76 +0.1 2,370,321 - HGI48_RS10920 0.76 +0.5 2,370,402 - HGI48_RS10920 0.84 +0.4 2,370,402 - HGI48_RS10920 0.84 +0.2 2,370,402 - HGI48_RS10920 0.84 +0.6 2,370,402 - -1.4 2,370,420 - HGI48_RS10920 0.86 -0.7 2,370,483 + +1.2 2,370,522 + +0.5 2,370,522 + -0.6 2,370,522 + +0.2 2,370,523 - -0.6 2,370,523 - +0.2 2,370,523 - -0.8 2,370,543 + -1.6 2,370,544 - +0.7 2,370,549 + +0.6 2,370,549 + -0.9 2,370,549 + +0.5 2,370,599 - +0.9 2,370,614 - +1.4 2,370,614 - +0.9 2,370,618 - +0.4 2,370,631 + +0.5
Or see this region's nucleotide sequence