Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10805

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS10800 and HGI48_RS10805 overlap by 4 nucleotidesHGI48_RS10805 and HGI48_RS10810 are separated by 562 nucleotides HGI48_RS10800: HGI48_RS10800 - virulence factor SrfB, at 2,336,830 to 2,339,820 _RS10800 HGI48_RS10805: HGI48_RS10805 - virulence factor, at 2,339,817 to 2,342,336 _RS10805 HGI48_RS10810: HGI48_RS10810 - hypothetical protein, at 2,342,899 to 2,343,354 _RS10810 Position (kb) 2339 2340 2341 2342 2343Strain fitness (log2 ratio) -2 -1 0 1 2at 2338.859 kb on - strand, within HGI48_RS10800at 2338.951 kb on + strand, within HGI48_RS10800at 2338.951 kb on + strand, within HGI48_RS10800at 2338.952 kb on - strand, within HGI48_RS10800at 2338.952 kb on - strand, within HGI48_RS10800at 2338.952 kb on - strandat 2339.116 kb on + strand, within HGI48_RS10800at 2339.117 kb on - strand, within HGI48_RS10800at 2339.117 kb on - strand, within HGI48_RS10800at 2339.248 kb on + strand, within HGI48_RS10800at 2339.312 kb on + strandat 2339.312 kb on + strand, within HGI48_RS10800at 2339.312 kb on + strand, within HGI48_RS10800at 2339.312 kb on + strand, within HGI48_RS10800at 2339.313 kb on - strand, within HGI48_RS10800at 2339.313 kb on - strand, within HGI48_RS10800at 2339.313 kb on - strand, within HGI48_RS10800at 2339.351 kb on - strand, within HGI48_RS10800at 2339.377 kb on + strand, within HGI48_RS10800at 2339.378 kb on - strand, within HGI48_RS10800at 2339.393 kb on - strand, within HGI48_RS10800at 2339.425 kb on - strand, within HGI48_RS10800at 2339.440 kb on + strand, within HGI48_RS10800at 2339.441 kb on - strandat 2339.441 kb on - strand, within HGI48_RS10800at 2339.441 kb on - strand, within HGI48_RS10800at 2339.441 kb on - strand, within HGI48_RS10800at 2339.441 kb on - strandat 2339.443 kb on + strand, within HGI48_RS10800at 2339.443 kb on + strand, within HGI48_RS10800at 2339.443 kb on + strand, within HGI48_RS10800at 2339.444 kb on - strand, within HGI48_RS10800at 2339.444 kb on - strand, within HGI48_RS10800at 2339.444 kb on - strand, within HGI48_RS10800at 2339.444 kb on - strand, within HGI48_RS10800at 2339.444 kb on - strand, within HGI48_RS10800at 2339.569 kb on + strandat 2339.570 kb on - strandat 2339.624 kb on + strandat 2339.624 kb on + strandat 2339.624 kb on + strandat 2339.624 kb on + strandat 2339.624 kb on + strandat 2339.688 kb on - strandat 2339.688 kb on - strandat 2339.735 kb on + strandat 2339.735 kb on + strandat 2339.736 kb on - strandat 2339.736 kb on - strandat 2339.736 kb on - strandat 2339.751 kb on + strandat 2339.751 kb on + strandat 2339.751 kb on + strandat 2339.751 kb on + strandat 2339.752 kb on - strandat 2339.752 kb on - strandat 2339.785 kb on + strandat 2339.785 kb on + strandat 2339.887 kb on + strandat 2339.888 kb on - strandat 2339.888 kb on - strandat 2339.888 kb on - strandat 2339.888 kb on - strandat 2339.888 kb on - strandat 2340.025 kb on + strandat 2340.026 kb on - strandat 2340.066 kb on + strandat 2340.066 kb on + strandat 2340.067 kb on - strandat 2340.067 kb on - strandat 2340.138 kb on + strand, within HGI48_RS10805at 2340.149 kb on + strandat 2340.149 kb on + strand, within HGI48_RS10805at 2340.150 kb on - strand, within HGI48_RS10805at 2340.241 kb on + strand, within HGI48_RS10805at 2340.242 kb on - strand, within HGI48_RS10805at 2340.242 kb on - strand, within HGI48_RS10805at 2340.266 kb on + strand, within HGI48_RS10805at 2340.269 kb on + strandat 2340.269 kb on + strand, within HGI48_RS10805at 2340.269 kb on + strand, within HGI48_RS10805at 2340.269 kb on + strand, within HGI48_RS10805at 2340.269 kb on + strand, within HGI48_RS10805at 2340.269 kb on + strand, within HGI48_RS10805at 2340.270 kb on - strand, within HGI48_RS10805at 2340.270 kb on - strand, within HGI48_RS10805at 2340.270 kb on - strand, within HGI48_RS10805at 2340.270 kb on - strand, within HGI48_RS10805at 2340.277 kb on - strand, within HGI48_RS10805at 2340.424 kb on - strand, within HGI48_RS10805at 2340.561 kb on + strand, within HGI48_RS10805at 2340.561 kb on + strand, within HGI48_RS10805at 2340.561 kb on + strand, within HGI48_RS10805at 2340.562 kb on - strand, within HGI48_RS10805at 2340.562 kb on - strand, within HGI48_RS10805at 2340.562 kb on - strand, within HGI48_RS10805at 2340.562 kb on - strand, within HGI48_RS10805at 2340.562 kb on - strandat 2340.674 kb on + strand, within HGI48_RS10805at 2340.674 kb on + strand, within HGI48_RS10805at 2340.675 kb on - strand, within HGI48_RS10805at 2340.707 kb on + strand, within HGI48_RS10805at 2340.707 kb on + strand, within HGI48_RS10805at 2340.727 kb on + strand, within HGI48_RS10805at 2340.727 kb on + strand, within HGI48_RS10805at 2340.848 kb on - strand, within HGI48_RS10805at 2340.848 kb on - strand, within HGI48_RS10805at 2340.848 kb on - strand, within HGI48_RS10805at 2340.974 kb on - strand, within HGI48_RS10805at 2341.009 kb on - strand, within HGI48_RS10805at 2341.009 kb on - strand, within HGI48_RS10805at 2341.203 kb on + strand, within HGI48_RS10805at 2341.203 kb on + strand, within HGI48_RS10805at 2341.203 kb on + strandat 2341.203 kb on + strand, within HGI48_RS10805at 2341.206 kb on - strand, within HGI48_RS10805at 2341.206 kb on - strand, within HGI48_RS10805at 2341.231 kb on - strand, within HGI48_RS10805at 2341.492 kb on + strand, within HGI48_RS10805at 2341.538 kb on - strand, within HGI48_RS10805at 2341.548 kb on + strand, within HGI48_RS10805at 2341.629 kb on + strand, within HGI48_RS10805at 2341.629 kb on + strand, within HGI48_RS10805at 2341.629 kb on + strand, within HGI48_RS10805at 2341.629 kb on + strand, within HGI48_RS10805at 2341.629 kb on + strandat 2341.629 kb on + strand, within HGI48_RS10805at 2341.629 kb on + strand, within HGI48_RS10805at 2341.630 kb on - strand, within HGI48_RS10805at 2341.630 kb on - strand, within HGI48_RS10805at 2341.630 kb on - strand, within HGI48_RS10805at 2341.755 kb on + strand, within HGI48_RS10805at 2341.755 kb on + strand, within HGI48_RS10805at 2341.755 kb on + strand, within HGI48_RS10805at 2341.755 kb on + strandat 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strand, within HGI48_RS10805at 2341.756 kb on - strandat 2341.809 kb on - strand, within HGI48_RS10805at 2341.864 kb on + strand, within HGI48_RS10805at 2341.973 kb on + strand, within HGI48_RS10805at 2341.973 kb on + strand, within HGI48_RS10805at 2341.973 kb on + strand, within HGI48_RS10805at 2341.974 kb on - strand, within HGI48_RS10805at 2341.990 kb on + strand, within HGI48_RS10805at 2342.196 kb on + strandat 2342.197 kb on - strandat 2342.197 kb on - strandat 2342.197 kb on - strandat 2342.197 kb on - strandat 2342.199 kb on + strandat 2342.199 kb on + strandat 2342.200 kb on - strandat 2342.200 kb on - strandat 2342.200 kb on - strandat 2342.201 kb on + strandat 2342.201 kb on + strandat 2342.201 kb on + strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.202 kb on - strandat 2342.205 kb on + strandat 2342.205 kb on + strandat 2342.205 kb on + strandat 2342.205 kb on + strandat 2342.206 kb on - strandat 2342.206 kb on - strandat 2342.219 kb on - strandat 2342.219 kb on - strandat 2342.219 kb on - strandat 2342.273 kb on + strandat 2342.274 kb on - strandat 2342.480 kb on + strandat 2342.481 kb on - strandat 2342.499 kb on + strandat 2342.500 kb on - strandat 2342.500 kb on - strandat 2342.516 kb on + strandat 2342.516 kb on + strandat 2342.516 kb on + strandat 2342.517 kb on - strandat 2342.517 kb on - strandat 2342.531 kb on + strandat 2342.531 kb on + strandat 2342.532 kb on - strandat 2342.565 kb on - strandat 2342.584 kb on + strandat 2342.590 kb on + strandat 2342.590 kb on + strandat 2342.661 kb on + strandat 2342.717 kb on - strandat 2342.761 kb on + strandat 2342.762 kb on - strandat 2342.815 kb on + strandat 2342.815 kb on + strandat 2342.816 kb on - strandat 2342.904 kb on + strandat 2342.905 kb on - strandat 2343.176 kb on - strand, within HGI48_RS10810at 2343.220 kb on + strand, within HGI48_RS10810

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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2,338,859 - HGI48_RS10800 0.68 +0.5
2,338,951 + HGI48_RS10800 0.71 +0.2
2,338,951 + HGI48_RS10800 0.71 +1.5
2,338,952 - HGI48_RS10800 0.71 -0.4
2,338,952 - HGI48_RS10800 0.71 +0.6
2,338,952 - +1.6
2,339,116 + HGI48_RS10800 0.76 -0.2
2,339,117 - HGI48_RS10800 0.76 +0.4
2,339,117 - HGI48_RS10800 0.76 -0.3
2,339,248 + HGI48_RS10800 0.81 +1.5
2,339,312 + +2.0
2,339,312 + HGI48_RS10800 0.83 -0.4
2,339,312 + HGI48_RS10800 0.83 -0.3
2,339,312 + HGI48_RS10800 0.83 +0.8
2,339,313 - HGI48_RS10800 0.83 +0.5
2,339,313 - HGI48_RS10800 0.83 -0.1
2,339,313 - HGI48_RS10800 0.83 +0.7
2,339,351 - HGI48_RS10800 0.84 -0.8
2,339,377 + HGI48_RS10800 0.85 -0.8
2,339,378 - HGI48_RS10800 0.85 -0.8
2,339,393 - HGI48_RS10800 0.86 -0.1
2,339,425 - HGI48_RS10800 0.87 +1.5
2,339,440 + HGI48_RS10800 0.87 -1.1
2,339,441 - +0.9
2,339,441 - HGI48_RS10800 0.87 -0.1
2,339,441 - HGI48_RS10800 0.87 +0.7
2,339,441 - HGI48_RS10800 0.87 -1.8
2,339,441 - +0.9
2,339,443 + HGI48_RS10800 0.87 -1.1
2,339,443 + HGI48_RS10800 0.87 -0.6
2,339,443 + HGI48_RS10800 0.87 +1.8
2,339,444 - HGI48_RS10800 0.87 +0.7
2,339,444 - HGI48_RS10800 0.87 +0.5
2,339,444 - HGI48_RS10800 0.87 +1.0
2,339,444 - HGI48_RS10800 0.87 -2.5
2,339,444 - HGI48_RS10800 0.87 +0.1
2,339,569 + +0.8
2,339,570 - -1.4
2,339,624 + +1.1
2,339,624 + -0.2
2,339,624 + +1.7
2,339,624 + +0.1
2,339,624 + +1.5
2,339,688 - +0.4
2,339,688 - +1.5
2,339,735 + +0.2
2,339,735 + +1.2
2,339,736 - -0.8
2,339,736 - -1.5
2,339,736 - +1.1
2,339,751 + +1.0
2,339,751 + +2.5
2,339,751 + +0.2
2,339,751 + +0.9
2,339,752 - +0.1
2,339,752 - +1.5
2,339,785 + +0.7
2,339,785 + -1.9
2,339,887 + -0.2
2,339,888 - +0.2
2,339,888 - +1.0
2,339,888 - +0.7
2,339,888 - +0.2
2,339,888 - +0.0
2,340,025 + +1.1
2,340,026 - -1.4
2,340,066 + -2.1
2,340,066 + -0.3
2,340,067 - -0.9
2,340,067 - +1.4
2,340,138 + HGI48_RS10805 0.13 +0.4
2,340,149 + +0.2
2,340,149 + HGI48_RS10805 0.13 -0.6
2,340,150 - HGI48_RS10805 0.13 +1.1
2,340,241 + HGI48_RS10805 0.17 +0.2
2,340,242 - HGI48_RS10805 0.17 -0.1
2,340,242 - HGI48_RS10805 0.17 +1.1
2,340,266 + HGI48_RS10805 0.18 -0.5
2,340,269 + -1.4
2,340,269 + HGI48_RS10805 0.18 -1.1
2,340,269 + HGI48_RS10805 0.18 +0.5
2,340,269 + HGI48_RS10805 0.18 -1.3
2,340,269 + HGI48_RS10805 0.18 -0.6
2,340,269 + HGI48_RS10805 0.18 -0.3
2,340,270 - HGI48_RS10805 0.18 +0.1
2,340,270 - HGI48_RS10805 0.18 +1.3
2,340,270 - HGI48_RS10805 0.18 +1.3
2,340,270 - HGI48_RS10805 0.18 +0.1
2,340,277 - HGI48_RS10805 0.18 -0.8
2,340,424 - HGI48_RS10805 0.24 +0.1
2,340,561 + HGI48_RS10805 0.30 -0.8
2,340,561 + HGI48_RS10805 0.30 +0.1
2,340,561 + HGI48_RS10805 0.30 +0.5
2,340,562 - HGI48_RS10805 0.30 +1.8
2,340,562 - HGI48_RS10805 0.30 +0.6
2,340,562 - HGI48_RS10805 0.30 +1.4
2,340,562 - HGI48_RS10805 0.30 -0.6
2,340,562 - -1.4
2,340,674 + HGI48_RS10805 0.34 +0.4
2,340,674 + HGI48_RS10805 0.34 +0.8
2,340,675 - HGI48_RS10805 0.34 -2.6
2,340,707 + HGI48_RS10805 0.35 -0.5
2,340,707 + HGI48_RS10805 0.35 -1.8
2,340,727 + HGI48_RS10805 0.36 -1.4
2,340,727 + HGI48_RS10805 0.36 +0.9
2,340,848 - HGI48_RS10805 0.41 +0.0
2,340,848 - HGI48_RS10805 0.41 +0.1
2,340,848 - HGI48_RS10805 0.41 +0.5
2,340,974 - HGI48_RS10805 0.46 +0.0
2,341,009 - HGI48_RS10805 0.47 -2.4
2,341,009 - HGI48_RS10805 0.47 -0.9
2,341,203 + HGI48_RS10805 0.55 +0.4
2,341,203 + HGI48_RS10805 0.55 +0.2
2,341,203 + +1.2
2,341,203 + HGI48_RS10805 0.55 +2.1
2,341,206 - HGI48_RS10805 0.55 +0.5
2,341,206 - HGI48_RS10805 0.55 +1.4
2,341,231 - HGI48_RS10805 0.56 +0.4
2,341,492 + HGI48_RS10805 0.66 -0.8
2,341,538 - HGI48_RS10805 0.68 +0.7
2,341,548 + HGI48_RS10805 0.69 -0.4
2,341,629 + HGI48_RS10805 0.72 -0.0
2,341,629 + HGI48_RS10805 0.72 +0.2
2,341,629 + HGI48_RS10805 0.72 -0.6
2,341,629 + HGI48_RS10805 0.72 +0.2
2,341,629 + +0.6
2,341,629 + HGI48_RS10805 0.72 +0.9
2,341,629 + HGI48_RS10805 0.72 -2.1
2,341,630 - HGI48_RS10805 0.72 +0.2
2,341,630 - HGI48_RS10805 0.72 +1.9
2,341,630 - HGI48_RS10805 0.72 -0.0
2,341,755 + HGI48_RS10805 0.77 -2.4
2,341,755 + HGI48_RS10805 0.77 +0.7
2,341,755 + HGI48_RS10805 0.77 +0.2
2,341,755 + +1.8
2,341,756 - HGI48_RS10805 0.77 -0.9
2,341,756 - HGI48_RS10805 0.77 +0.7
2,341,756 - HGI48_RS10805 0.77 +1.2
2,341,756 - HGI48_RS10805 0.77 -0.5
2,341,756 - HGI48_RS10805 0.77 -1.8
2,341,756 - HGI48_RS10805 0.77 +0.2
2,341,756 - HGI48_RS10805 0.77 +2.5
2,341,756 - HGI48_RS10805 0.77 +0.2
2,341,756 - HGI48_RS10805 0.77 -1.3
2,341,756 - HGI48_RS10805 0.77 +0.2
2,341,756 - HGI48_RS10805 0.77 -0.8
2,341,756 - +0.9
2,341,809 - HGI48_RS10805 0.79 +0.5
2,341,864 + HGI48_RS10805 0.81 -0.9
2,341,973 + HGI48_RS10805 0.86 -0.4
2,341,973 + HGI48_RS10805 0.86 -0.6
2,341,973 + HGI48_RS10805 0.86 +1.1
2,341,974 - HGI48_RS10805 0.86 +0.2
2,341,990 + HGI48_RS10805 0.86 +0.1
2,342,196 + +0.5
2,342,197 - +0.6
2,342,197 - +1.6
2,342,197 - -0.0
2,342,197 - -1.4
2,342,199 + +0.8
2,342,199 + +1.8
2,342,200 - -1.8
2,342,200 - +0.5
2,342,200 - +1.8
2,342,201 + +0.2
2,342,201 + -0.4
2,342,201 + -2.4
2,342,202 - +0.4
2,342,202 - +0.4
2,342,202 - +1.2
2,342,202 - +1.2
2,342,202 - -0.6
2,342,202 - -0.8
2,342,202 - +0.4
2,342,202 - -0.8
2,342,202 - +1.7
2,342,202 - -1.0
2,342,205 + -0.1
2,342,205 + +0.2
2,342,205 + +1.6
2,342,205 + -2.1
2,342,206 - +0.5
2,342,206 - -0.2
2,342,219 - -0.4
2,342,219 - -1.8
2,342,219 - +0.3
2,342,273 + +0.6
2,342,274 - -0.2
2,342,480 + +1.2
2,342,481 - -0.8
2,342,499 + -0.2
2,342,500 - -0.2
2,342,500 - -1.1
2,342,516 + -1.0
2,342,516 + -2.0
2,342,516 + -1.1
2,342,517 - +1.5
2,342,517 - +0.8
2,342,531 + +1.4
2,342,531 + -2.1
2,342,532 - +0.7
2,342,565 - -1.4
2,342,584 + +0.2
2,342,590 + +0.4
2,342,590 + -2.1
2,342,661 + -0.8
2,342,717 - -0.8
2,342,761 + +0.3
2,342,762 - +0.2
2,342,815 + -0.4
2,342,815 + -0.0
2,342,816 - +1.2
2,342,904 + +1.8
2,342,905 - -0.4
2,343,176 - HGI48_RS10810 0.61 -0.5
2,343,220 + HGI48_RS10810 0.70 +0.2

Or see this region's nucleotide sequence