Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS10800 and HGI48_RS10805 overlap by 4 nucleotides HGI48_RS10805 and HGI48_RS10810 are separated by 562 nucleotides
HGI48_RS10800: HGI48_RS10800 - virulence factor SrfB, at 2,336,830 to 2,339,820
_RS10800
HGI48_RS10805: HGI48_RS10805 - virulence factor, at 2,339,817 to 2,342,336
_RS10805
HGI48_RS10810: HGI48_RS10810 - hypothetical protein, at 2,342,899 to 2,343,354
_RS10810
Position (kb)
2339
2340
2341
2342
2343 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2338.859 kb on - strand, within HGI48_RS10800 at 2338.951 kb on + strand, within HGI48_RS10800 at 2338.951 kb on + strand, within HGI48_RS10800 at 2338.952 kb on - strand, within HGI48_RS10800 at 2338.952 kb on - strand, within HGI48_RS10800 at 2338.952 kb on - strand at 2339.116 kb on + strand, within HGI48_RS10800 at 2339.117 kb on - strand, within HGI48_RS10800 at 2339.117 kb on - strand, within HGI48_RS10800 at 2339.248 kb on + strand, within HGI48_RS10800 at 2339.312 kb on + strand at 2339.312 kb on + strand, within HGI48_RS10800 at 2339.312 kb on + strand, within HGI48_RS10800 at 2339.312 kb on + strand, within HGI48_RS10800 at 2339.313 kb on - strand, within HGI48_RS10800 at 2339.313 kb on - strand, within HGI48_RS10800 at 2339.313 kb on - strand, within HGI48_RS10800 at 2339.351 kb on - strand, within HGI48_RS10800 at 2339.377 kb on + strand, within HGI48_RS10800 at 2339.378 kb on - strand, within HGI48_RS10800 at 2339.393 kb on - strand, within HGI48_RS10800 at 2339.425 kb on - strand, within HGI48_RS10800 at 2339.440 kb on + strand, within HGI48_RS10800 at 2339.441 kb on - strand at 2339.441 kb on - strand, within HGI48_RS10800 at 2339.441 kb on - strand, within HGI48_RS10800 at 2339.441 kb on - strand, within HGI48_RS10800 at 2339.441 kb on - strand at 2339.443 kb on + strand, within HGI48_RS10800 at 2339.443 kb on + strand, within HGI48_RS10800 at 2339.443 kb on + strand, within HGI48_RS10800 at 2339.444 kb on - strand, within HGI48_RS10800 at 2339.444 kb on - strand, within HGI48_RS10800 at 2339.444 kb on - strand, within HGI48_RS10800 at 2339.444 kb on - strand, within HGI48_RS10800 at 2339.444 kb on - strand, within HGI48_RS10800 at 2339.569 kb on + strand at 2339.570 kb on - strand at 2339.624 kb on + strand at 2339.624 kb on + strand at 2339.624 kb on + strand at 2339.624 kb on + strand at 2339.624 kb on + strand at 2339.688 kb on - strand at 2339.688 kb on - strand at 2339.735 kb on + strand at 2339.735 kb on + strand at 2339.736 kb on - strand at 2339.736 kb on - strand at 2339.736 kb on - strand at 2339.751 kb on + strand at 2339.751 kb on + strand at 2339.751 kb on + strand at 2339.751 kb on + strand at 2339.752 kb on - strand at 2339.752 kb on - strand at 2339.785 kb on + strand at 2339.785 kb on + strand at 2339.887 kb on + strand at 2339.888 kb on - strand at 2339.888 kb on - strand at 2339.888 kb on - strand at 2339.888 kb on - strand at 2339.888 kb on - strand at 2340.025 kb on + strand at 2340.026 kb on - strand at 2340.066 kb on + strand at 2340.066 kb on + strand at 2340.067 kb on - strand at 2340.067 kb on - strand at 2340.138 kb on + strand, within HGI48_RS10805 at 2340.149 kb on + strand at 2340.149 kb on + strand, within HGI48_RS10805 at 2340.150 kb on - strand, within HGI48_RS10805 at 2340.241 kb on + strand, within HGI48_RS10805 at 2340.242 kb on - strand, within HGI48_RS10805 at 2340.242 kb on - strand, within HGI48_RS10805 at 2340.266 kb on + strand, within HGI48_RS10805 at 2340.269 kb on + strand at 2340.269 kb on + strand, within HGI48_RS10805 at 2340.269 kb on + strand, within HGI48_RS10805 at 2340.269 kb on + strand, within HGI48_RS10805 at 2340.269 kb on + strand, within HGI48_RS10805 at 2340.269 kb on + strand, within HGI48_RS10805 at 2340.270 kb on - strand, within HGI48_RS10805 at 2340.270 kb on - strand, within HGI48_RS10805 at 2340.270 kb on - strand, within HGI48_RS10805 at 2340.270 kb on - strand, within HGI48_RS10805 at 2340.277 kb on - strand, within HGI48_RS10805 at 2340.424 kb on - strand, within HGI48_RS10805 at 2340.561 kb on + strand, within HGI48_RS10805 at 2340.561 kb on + strand, within HGI48_RS10805 at 2340.561 kb on + strand, within HGI48_RS10805 at 2340.562 kb on - strand, within HGI48_RS10805 at 2340.562 kb on - strand, within HGI48_RS10805 at 2340.562 kb on - strand, within HGI48_RS10805 at 2340.562 kb on - strand, within HGI48_RS10805 at 2340.562 kb on - strand at 2340.674 kb on + strand, within HGI48_RS10805 at 2340.674 kb on + strand, within HGI48_RS10805 at 2340.675 kb on - strand, within HGI48_RS10805 at 2340.707 kb on + strand, within HGI48_RS10805 at 2340.707 kb on + strand, within HGI48_RS10805 at 2340.727 kb on + strand, within HGI48_RS10805 at 2340.727 kb on + strand, within HGI48_RS10805 at 2340.848 kb on - strand, within HGI48_RS10805 at 2340.848 kb on - strand, within HGI48_RS10805 at 2340.848 kb on - strand, within HGI48_RS10805 at 2340.974 kb on - strand, within HGI48_RS10805 at 2341.009 kb on - strand, within HGI48_RS10805 at 2341.009 kb on - strand, within HGI48_RS10805 at 2341.203 kb on + strand, within HGI48_RS10805 at 2341.203 kb on + strand, within HGI48_RS10805 at 2341.203 kb on + strand at 2341.203 kb on + strand, within HGI48_RS10805 at 2341.206 kb on - strand, within HGI48_RS10805 at 2341.206 kb on - strand, within HGI48_RS10805 at 2341.231 kb on - strand, within HGI48_RS10805 at 2341.492 kb on + strand, within HGI48_RS10805 at 2341.538 kb on - strand, within HGI48_RS10805 at 2341.548 kb on + strand, within HGI48_RS10805 at 2341.629 kb on + strand, within HGI48_RS10805 at 2341.629 kb on + strand, within HGI48_RS10805 at 2341.629 kb on + strand, within HGI48_RS10805 at 2341.629 kb on + strand, within HGI48_RS10805 at 2341.629 kb on + strand at 2341.629 kb on + strand, within HGI48_RS10805 at 2341.629 kb on + strand, within HGI48_RS10805 at 2341.630 kb on - strand, within HGI48_RS10805 at 2341.630 kb on - strand, within HGI48_RS10805 at 2341.630 kb on - strand, within HGI48_RS10805 at 2341.755 kb on + strand, within HGI48_RS10805 at 2341.755 kb on + strand, within HGI48_RS10805 at 2341.755 kb on + strand, within HGI48_RS10805 at 2341.755 kb on + strand at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand, within HGI48_RS10805 at 2341.756 kb on - strand at 2341.809 kb on - strand, within HGI48_RS10805 at 2341.864 kb on + strand, within HGI48_RS10805 at 2341.973 kb on + strand, within HGI48_RS10805 at 2341.973 kb on + strand, within HGI48_RS10805 at 2341.973 kb on + strand, within HGI48_RS10805 at 2341.974 kb on - strand, within HGI48_RS10805 at 2341.990 kb on + strand, within HGI48_RS10805 at 2342.196 kb on + strand at 2342.197 kb on - strand at 2342.197 kb on - strand at 2342.197 kb on - strand at 2342.197 kb on - strand at 2342.199 kb on + strand at 2342.199 kb on + strand at 2342.200 kb on - strand at 2342.200 kb on - strand at 2342.200 kb on - strand at 2342.201 kb on + strand at 2342.201 kb on + strand at 2342.201 kb on + strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.202 kb on - strand at 2342.205 kb on + strand at 2342.205 kb on + strand at 2342.205 kb on + strand at 2342.205 kb on + strand at 2342.206 kb on - strand at 2342.206 kb on - strand at 2342.219 kb on - strand at 2342.219 kb on - strand at 2342.219 kb on - strand at 2342.273 kb on + strand at 2342.274 kb on - strand at 2342.480 kb on + strand at 2342.481 kb on - strand at 2342.499 kb on + strand at 2342.500 kb on - strand at 2342.500 kb on - strand at 2342.516 kb on + strand at 2342.516 kb on + strand at 2342.516 kb on + strand at 2342.517 kb on - strand at 2342.517 kb on - strand at 2342.531 kb on + strand at 2342.531 kb on + strand at 2342.532 kb on - strand at 2342.565 kb on - strand at 2342.584 kb on + strand at 2342.590 kb on + strand at 2342.590 kb on + strand at 2342.661 kb on + strand at 2342.717 kb on - strand at 2342.761 kb on + strand at 2342.762 kb on - strand at 2342.815 kb on + strand at 2342.815 kb on + strand at 2342.816 kb on - strand at 2342.904 kb on + strand at 2342.905 kb on - strand at 2343.176 kb on - strand, within HGI48_RS10810 at 2343.220 kb on + strand, within HGI48_RS10810
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 2,338,859 - HGI48_RS10800 0.68 +0.5 2,338,951 + HGI48_RS10800 0.71 +0.2 2,338,951 + HGI48_RS10800 0.71 +1.5 2,338,952 - HGI48_RS10800 0.71 -0.4 2,338,952 - HGI48_RS10800 0.71 +0.6 2,338,952 - +1.6 2,339,116 + HGI48_RS10800 0.76 -0.2 2,339,117 - HGI48_RS10800 0.76 +0.4 2,339,117 - HGI48_RS10800 0.76 -0.3 2,339,248 + HGI48_RS10800 0.81 +1.5 2,339,312 + +2.0 2,339,312 + HGI48_RS10800 0.83 -0.4 2,339,312 + HGI48_RS10800 0.83 -0.3 2,339,312 + HGI48_RS10800 0.83 +0.8 2,339,313 - HGI48_RS10800 0.83 +0.5 2,339,313 - HGI48_RS10800 0.83 -0.1 2,339,313 - HGI48_RS10800 0.83 +0.7 2,339,351 - HGI48_RS10800 0.84 -0.8 2,339,377 + HGI48_RS10800 0.85 -0.8 2,339,378 - HGI48_RS10800 0.85 -0.8 2,339,393 - HGI48_RS10800 0.86 -0.1 2,339,425 - HGI48_RS10800 0.87 +1.5 2,339,440 + HGI48_RS10800 0.87 -1.1 2,339,441 - +0.9 2,339,441 - HGI48_RS10800 0.87 -0.1 2,339,441 - HGI48_RS10800 0.87 +0.7 2,339,441 - HGI48_RS10800 0.87 -1.8 2,339,441 - +0.9 2,339,443 + HGI48_RS10800 0.87 -1.1 2,339,443 + HGI48_RS10800 0.87 -0.6 2,339,443 + HGI48_RS10800 0.87 +1.8 2,339,444 - HGI48_RS10800 0.87 +0.7 2,339,444 - HGI48_RS10800 0.87 +0.5 2,339,444 - HGI48_RS10800 0.87 +1.0 2,339,444 - HGI48_RS10800 0.87 -2.5 2,339,444 - HGI48_RS10800 0.87 +0.1 2,339,569 + +0.8 2,339,570 - -1.4 2,339,624 + +1.1 2,339,624 + -0.2 2,339,624 + +1.7 2,339,624 + +0.1 2,339,624 + +1.5 2,339,688 - +0.4 2,339,688 - +1.5 2,339,735 + +0.2 2,339,735 + +1.2 2,339,736 - -0.8 2,339,736 - -1.5 2,339,736 - +1.1 2,339,751 + +1.0 2,339,751 + +2.5 2,339,751 + +0.2 2,339,751 + +0.9 2,339,752 - +0.1 2,339,752 - +1.5 2,339,785 + +0.7 2,339,785 + -1.9 2,339,887 + -0.2 2,339,888 - +0.2 2,339,888 - +1.0 2,339,888 - +0.7 2,339,888 - +0.2 2,339,888 - +0.0 2,340,025 + +1.1 2,340,026 - -1.4 2,340,066 + -2.1 2,340,066 + -0.3 2,340,067 - -0.9 2,340,067 - +1.4 2,340,138 + HGI48_RS10805 0.13 +0.4 2,340,149 + +0.2 2,340,149 + HGI48_RS10805 0.13 -0.6 2,340,150 - HGI48_RS10805 0.13 +1.1 2,340,241 + HGI48_RS10805 0.17 +0.2 2,340,242 - HGI48_RS10805 0.17 -0.1 2,340,242 - HGI48_RS10805 0.17 +1.1 2,340,266 + HGI48_RS10805 0.18 -0.5 2,340,269 + -1.4 2,340,269 + HGI48_RS10805 0.18 -1.1 2,340,269 + HGI48_RS10805 0.18 +0.5 2,340,269 + HGI48_RS10805 0.18 -1.3 2,340,269 + HGI48_RS10805 0.18 -0.6 2,340,269 + HGI48_RS10805 0.18 -0.3 2,340,270 - HGI48_RS10805 0.18 +0.1 2,340,270 - HGI48_RS10805 0.18 +1.3 2,340,270 - HGI48_RS10805 0.18 +1.3 2,340,270 - HGI48_RS10805 0.18 +0.1 2,340,277 - HGI48_RS10805 0.18 -0.8 2,340,424 - HGI48_RS10805 0.24 +0.1 2,340,561 + HGI48_RS10805 0.30 -0.8 2,340,561 + HGI48_RS10805 0.30 +0.1 2,340,561 + HGI48_RS10805 0.30 +0.5 2,340,562 - HGI48_RS10805 0.30 +1.8 2,340,562 - HGI48_RS10805 0.30 +0.6 2,340,562 - HGI48_RS10805 0.30 +1.4 2,340,562 - HGI48_RS10805 0.30 -0.6 2,340,562 - -1.4 2,340,674 + HGI48_RS10805 0.34 +0.4 2,340,674 + HGI48_RS10805 0.34 +0.8 2,340,675 - HGI48_RS10805 0.34 -2.6 2,340,707 + HGI48_RS10805 0.35 -0.5 2,340,707 + HGI48_RS10805 0.35 -1.8 2,340,727 + HGI48_RS10805 0.36 -1.4 2,340,727 + HGI48_RS10805 0.36 +0.9 2,340,848 - HGI48_RS10805 0.41 +0.0 2,340,848 - HGI48_RS10805 0.41 +0.1 2,340,848 - HGI48_RS10805 0.41 +0.5 2,340,974 - HGI48_RS10805 0.46 +0.0 2,341,009 - HGI48_RS10805 0.47 -2.4 2,341,009 - HGI48_RS10805 0.47 -0.9 2,341,203 + HGI48_RS10805 0.55 +0.4 2,341,203 + HGI48_RS10805 0.55 +0.2 2,341,203 + +1.2 2,341,203 + HGI48_RS10805 0.55 +2.1 2,341,206 - HGI48_RS10805 0.55 +0.5 2,341,206 - HGI48_RS10805 0.55 +1.4 2,341,231 - HGI48_RS10805 0.56 +0.4 2,341,492 + HGI48_RS10805 0.66 -0.8 2,341,538 - HGI48_RS10805 0.68 +0.7 2,341,548 + HGI48_RS10805 0.69 -0.4 2,341,629 + HGI48_RS10805 0.72 -0.0 2,341,629 + HGI48_RS10805 0.72 +0.2 2,341,629 + HGI48_RS10805 0.72 -0.6 2,341,629 + HGI48_RS10805 0.72 +0.2 2,341,629 + +0.6 2,341,629 + HGI48_RS10805 0.72 +0.9 2,341,629 + HGI48_RS10805 0.72 -2.1 2,341,630 - HGI48_RS10805 0.72 +0.2 2,341,630 - HGI48_RS10805 0.72 +1.9 2,341,630 - HGI48_RS10805 0.72 -0.0 2,341,755 + HGI48_RS10805 0.77 -2.4 2,341,755 + HGI48_RS10805 0.77 +0.7 2,341,755 + HGI48_RS10805 0.77 +0.2 2,341,755 + +1.8 2,341,756 - HGI48_RS10805 0.77 -0.9 2,341,756 - HGI48_RS10805 0.77 +0.7 2,341,756 - HGI48_RS10805 0.77 +1.2 2,341,756 - HGI48_RS10805 0.77 -0.5 2,341,756 - HGI48_RS10805 0.77 -1.8 2,341,756 - HGI48_RS10805 0.77 +0.2 2,341,756 - HGI48_RS10805 0.77 +2.5 2,341,756 - HGI48_RS10805 0.77 +0.2 2,341,756 - HGI48_RS10805 0.77 -1.3 2,341,756 - HGI48_RS10805 0.77 +0.2 2,341,756 - HGI48_RS10805 0.77 -0.8 2,341,756 - +0.9 2,341,809 - HGI48_RS10805 0.79 +0.5 2,341,864 + HGI48_RS10805 0.81 -0.9 2,341,973 + HGI48_RS10805 0.86 -0.4 2,341,973 + HGI48_RS10805 0.86 -0.6 2,341,973 + HGI48_RS10805 0.86 +1.1 2,341,974 - HGI48_RS10805 0.86 +0.2 2,341,990 + HGI48_RS10805 0.86 +0.1 2,342,196 + +0.5 2,342,197 - +0.6 2,342,197 - +1.6 2,342,197 - -0.0 2,342,197 - -1.4 2,342,199 + +0.8 2,342,199 + +1.8 2,342,200 - -1.8 2,342,200 - +0.5 2,342,200 - +1.8 2,342,201 + +0.2 2,342,201 + -0.4 2,342,201 + -2.4 2,342,202 - +0.4 2,342,202 - +0.4 2,342,202 - +1.2 2,342,202 - +1.2 2,342,202 - -0.6 2,342,202 - -0.8 2,342,202 - +0.4 2,342,202 - -0.8 2,342,202 - +1.7 2,342,202 - -1.0 2,342,205 + -0.1 2,342,205 + +0.2 2,342,205 + +1.6 2,342,205 + -2.1 2,342,206 - +0.5 2,342,206 - -0.2 2,342,219 - -0.4 2,342,219 - -1.8 2,342,219 - +0.3 2,342,273 + +0.6 2,342,274 - -0.2 2,342,480 + +1.2 2,342,481 - -0.8 2,342,499 + -0.2 2,342,500 - -0.2 2,342,500 - -1.1 2,342,516 + -1.0 2,342,516 + -2.0 2,342,516 + -1.1 2,342,517 - +1.5 2,342,517 - +0.8 2,342,531 + +1.4 2,342,531 + -2.1 2,342,532 - +0.7 2,342,565 - -1.4 2,342,584 + +0.2 2,342,590 + +0.4 2,342,590 + -2.1 2,342,661 + -0.8 2,342,717 - -0.8 2,342,761 + +0.3 2,342,762 - +0.2 2,342,815 + -0.4 2,342,815 + -0.0 2,342,816 - +1.2 2,342,904 + +1.8 2,342,905 - -0.4 2,343,176 - HGI48_RS10810 0.61 -0.5 2,343,220 + HGI48_RS10810 0.70 +0.2
Or see this region's nucleotide sequence