Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS10805

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,338,859	-		HGI48_RS10800	0.68	+0.5
2,338,951	+		HGI48_RS10800	0.71	+0.2
2,338,951	+		HGI48_RS10800	0.71	+1.5
2,338,952	-		HGI48_RS10800	0.71	-0.4
2,338,952	-		HGI48_RS10800	0.71	+0.6
2,338,952	-				+1.6
2,339,116	+		HGI48_RS10800	0.76	-0.2
2,339,117	-		HGI48_RS10800	0.76	+0.4
2,339,117	-		HGI48_RS10800	0.76	-0.3
2,339,248	+		HGI48_RS10800	0.81	+1.5
2,339,312	+				+2.0
2,339,312	+		HGI48_RS10800	0.83	-0.4
2,339,312	+		HGI48_RS10800	0.83	-0.3
2,339,312	+		HGI48_RS10800	0.83	+0.8
2,339,313	-		HGI48_RS10800	0.83	+0.5
2,339,313	-		HGI48_RS10800	0.83	-0.1
2,339,313	-		HGI48_RS10800	0.83	+0.7
2,339,351	-		HGI48_RS10800	0.84	-0.8
2,339,377	+		HGI48_RS10800	0.85	-0.8
2,339,378	-		HGI48_RS10800	0.85	-0.8
2,339,393	-		HGI48_RS10800	0.86	-0.1
2,339,425	-		HGI48_RS10800	0.87	+1.5
2,339,440	+		HGI48_RS10800	0.87	-1.1
2,339,441	-				+0.9
2,339,441	-		HGI48_RS10800	0.87	-0.1
2,339,441	-		HGI48_RS10800	0.87	+0.7
2,339,441	-		HGI48_RS10800	0.87	-1.8
2,339,441	-				+0.9
2,339,443	+		HGI48_RS10800	0.87	-1.1
2,339,443	+		HGI48_RS10800	0.87	-0.6
2,339,443	+		HGI48_RS10800	0.87	+1.8
2,339,444	-		HGI48_RS10800	0.87	+0.7
2,339,444	-		HGI48_RS10800	0.87	+0.5
2,339,444	-		HGI48_RS10800	0.87	+1.0
2,339,444	-		HGI48_RS10800	0.87	-2.5
2,339,444	-		HGI48_RS10800	0.87	+0.1
2,339,569	+				+0.8
2,339,570	-				-1.4
2,339,624	+				+1.1
2,339,624	+				-0.2
2,339,624	+				+1.7
2,339,624	+				+0.1
2,339,624	+				+1.5
2,339,688	-				+0.4
2,339,688	-				+1.5
2,339,735	+				+0.2
2,339,735	+				+1.2
2,339,736	-				-0.8
2,339,736	-				-1.5
2,339,736	-				+1.1
2,339,751	+				+1.0
2,339,751	+				+2.5
2,339,751	+				+0.2
2,339,751	+				+0.9
2,339,752	-				+0.1
2,339,752	-				+1.5
2,339,785	+				+0.7
2,339,785	+				-1.9
2,339,887	+				-0.2
2,339,888	-				+0.2
2,339,888	-				+1.0
2,339,888	-				+0.7
2,339,888	-				+0.2
2,339,888	-				+0.0
2,340,025	+				+1.1
2,340,026	-				-1.4
2,340,066	+				-2.1
2,340,066	+				-0.3
2,340,067	-				-0.9
2,340,067	-				+1.4
2,340,138	+		HGI48_RS10805	0.13	+0.4
2,340,149	+				+0.2
2,340,149	+		HGI48_RS10805	0.13	-0.6
2,340,150	-		HGI48_RS10805	0.13	+1.1
2,340,241	+		HGI48_RS10805	0.17	+0.2
2,340,242	-		HGI48_RS10805	0.17	-0.1
2,340,242	-		HGI48_RS10805	0.17	+1.1
2,340,266	+		HGI48_RS10805	0.18	-0.5
2,340,269	+				-1.4
2,340,269	+		HGI48_RS10805	0.18	-1.1
2,340,269	+		HGI48_RS10805	0.18	+0.5
2,340,269	+		HGI48_RS10805	0.18	-1.3
2,340,269	+		HGI48_RS10805	0.18	-0.6
2,340,269	+		HGI48_RS10805	0.18	-0.3
2,340,270	-		HGI48_RS10805	0.18	+0.1
2,340,270	-		HGI48_RS10805	0.18	+1.3
2,340,270	-		HGI48_RS10805	0.18	+1.3
2,340,270	-		HGI48_RS10805	0.18	+0.1
2,340,277	-		HGI48_RS10805	0.18	-0.8
2,340,424	-		HGI48_RS10805	0.24	+0.1
2,340,561	+		HGI48_RS10805	0.30	-0.8
2,340,561	+		HGI48_RS10805	0.30	+0.1
2,340,561	+		HGI48_RS10805	0.30	+0.5
2,340,562	-		HGI48_RS10805	0.30	+1.8
2,340,562	-		HGI48_RS10805	0.30	+0.6
2,340,562	-		HGI48_RS10805	0.30	+1.4
2,340,562	-		HGI48_RS10805	0.30	-0.6
2,340,562	-				-1.4
2,340,674	+		HGI48_RS10805	0.34	+0.4
2,340,674	+		HGI48_RS10805	0.34	+0.8
2,340,675	-		HGI48_RS10805	0.34	-2.6
2,340,707	+		HGI48_RS10805	0.35	-0.5
2,340,707	+		HGI48_RS10805	0.35	-1.8
2,340,727	+		HGI48_RS10805	0.36	-1.4
2,340,727	+		HGI48_RS10805	0.36	+0.9
2,340,848	-		HGI48_RS10805	0.41	+0.0
2,340,848	-		HGI48_RS10805	0.41	+0.1
2,340,848	-		HGI48_RS10805	0.41	+0.5
2,340,974	-		HGI48_RS10805	0.46	+0.0
2,341,009	-		HGI48_RS10805	0.47	-2.4
2,341,009	-		HGI48_RS10805	0.47	-0.9
2,341,203	+		HGI48_RS10805	0.55	+0.4
2,341,203	+		HGI48_RS10805	0.55	+0.2
2,341,203	+				+1.2
2,341,203	+		HGI48_RS10805	0.55	+2.1
2,341,206	-		HGI48_RS10805	0.55	+0.5
2,341,206	-		HGI48_RS10805	0.55	+1.4
2,341,231	-		HGI48_RS10805	0.56	+0.4
2,341,492	+		HGI48_RS10805	0.66	-0.8
2,341,538	-		HGI48_RS10805	0.68	+0.7
2,341,548	+		HGI48_RS10805	0.69	-0.4
2,341,629	+		HGI48_RS10805	0.72	-0.0
2,341,629	+		HGI48_RS10805	0.72	+0.2
2,341,629	+		HGI48_RS10805	0.72	-0.6
2,341,629	+		HGI48_RS10805	0.72	+0.2
2,341,629	+				+0.6
2,341,629	+		HGI48_RS10805	0.72	+0.9
2,341,629	+		HGI48_RS10805	0.72	-2.1
2,341,630	-		HGI48_RS10805	0.72	+0.2
2,341,630	-		HGI48_RS10805	0.72	+1.9
2,341,630	-		HGI48_RS10805	0.72	-0.0
2,341,755	+		HGI48_RS10805	0.77	-2.4
2,341,755	+		HGI48_RS10805	0.77	+0.7
2,341,755	+		HGI48_RS10805	0.77	+0.2
2,341,755	+				+1.8
2,341,756	-		HGI48_RS10805	0.77	-0.9
2,341,756	-		HGI48_RS10805	0.77	+0.7
2,341,756	-		HGI48_RS10805	0.77	+1.2
2,341,756	-		HGI48_RS10805	0.77	-0.5
2,341,756	-		HGI48_RS10805	0.77	-1.8
2,341,756	-		HGI48_RS10805	0.77	+0.2
2,341,756	-		HGI48_RS10805	0.77	+2.5
2,341,756	-		HGI48_RS10805	0.77	+0.2
2,341,756	-		HGI48_RS10805	0.77	-1.3
2,341,756	-		HGI48_RS10805	0.77	+0.2
2,341,756	-		HGI48_RS10805	0.77	-0.8
2,341,756	-				+0.9
2,341,809	-		HGI48_RS10805	0.79	+0.5
2,341,864	+		HGI48_RS10805	0.81	-0.9
2,341,973	+		HGI48_RS10805	0.86	-0.4
2,341,973	+		HGI48_RS10805	0.86	-0.6
2,341,973	+		HGI48_RS10805	0.86	+1.1
2,341,974	-		HGI48_RS10805	0.86	+0.2
2,341,990	+		HGI48_RS10805	0.86	+0.1
2,342,196	+				+0.5
2,342,197	-				+0.6
2,342,197	-				+1.6
2,342,197	-				-0.0
2,342,197	-				-1.4
2,342,199	+				+0.8
2,342,199	+				+1.8
2,342,200	-				-1.8
2,342,200	-				+0.5
2,342,200	-				+1.8
2,342,201	+				+0.2
2,342,201	+				-0.4
2,342,201	+				-2.4
2,342,202	-				+0.4
2,342,202	-				+0.4
2,342,202	-				+1.2
2,342,202	-				+1.2
2,342,202	-				-0.6
2,342,202	-				-0.8
2,342,202	-				+0.4
2,342,202	-				-0.8
2,342,202	-				+1.7
2,342,202	-				-1.0
2,342,205	+				-0.1
2,342,205	+				+0.2
2,342,205	+				+1.6
2,342,205	+				-2.1
2,342,206	-				+0.5
2,342,206	-				-0.2
2,342,219	-				-0.4
2,342,219	-				-1.8
2,342,219	-				+0.3
2,342,273	+				+0.6
2,342,274	-				-0.2
2,342,480	+				+1.2
2,342,481	-				-0.8
2,342,499	+				-0.2
2,342,500	-				-0.2
2,342,500	-				-1.1
2,342,516	+				-1.0
2,342,516	+				-2.0
2,342,516	+				-1.1
2,342,517	-				+1.5
2,342,517	-				+0.8
2,342,531	+				+1.4
2,342,531	+				-2.1
2,342,532	-				+0.7
2,342,565	-				-1.4
2,342,584	+				+0.2
2,342,590	+				+0.4
2,342,590	+				-2.1
2,342,661	+				-0.8
2,342,717	-				-0.8
2,342,761	+				+0.3
2,342,762	-				+0.2
2,342,815	+				-0.4
2,342,815	+				-0.0
2,342,816	-				+1.2
2,342,904	+				+1.8
2,342,905	-				-0.4
2,343,176	-		HGI48_RS10810	0.61	-0.5
2,343,220	+		HGI48_RS10810	0.70	+0.2