Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09765

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,106,722	+		HGI48_RS09760	0.17	+0.2
2,106,722	+		HGI48_RS09760	0.17	-0.1
2,106,843	-		HGI48_RS09760	0.32	+1.2
2,106,864	+		HGI48_RS09760	0.34	-0.2
2,106,865	-		HGI48_RS09760	0.35	-0.5
2,106,865	-		HGI48_RS09760	0.35	-0.5
2,106,865	-				+0.3
2,106,901	+		HGI48_RS09760	0.39	+0.8
2,106,901	+		HGI48_RS09760	0.39	+0.1
2,106,901	+		HGI48_RS09760	0.39	-0.6
2,106,902	-		HGI48_RS09760	0.39	-1.3
2,106,902	-		HGI48_RS09760	0.39	+0.9
2,106,902	-		HGI48_RS09760	0.39	-1.3
2,106,902	-		HGI48_RS09760	0.39	-1.4
2,106,905	+		HGI48_RS09760	0.39	-0.3
2,106,905	+		HGI48_RS09760	0.39	-3.1
2,106,905	+		HGI48_RS09760	0.39	-0.3
2,106,905	+		HGI48_RS09760	0.39	-0.2
2,107,045	+		HGI48_RS09760	0.56	-1.1
2,107,211	+		HGI48_RS09760	0.77	-1.1
2,107,212	-		HGI48_RS09760	0.77	+0.3
2,107,241	-		HGI48_RS09760	0.80	-2.5
2,107,367	+				-0.4
2,107,400	+				+0.1
2,107,429	-				-0.7
2,107,429	-				-0.5
2,107,429	-				+0.9
2,107,429	-				+0.3
2,107,537	+				+1.2
2,107,538	-				-0.7
2,107,613	+				-2.1
2,107,614	-				+1.9
2,107,614	-				+0.8
2,107,618	+				-1.6
2,107,619	-				-0.7
2,107,759	+		HGI48_RS09765	0.10	+0.5
2,107,891	+		HGI48_RS09765	0.17	+0.0
2,107,911	-		HGI48_RS09765	0.18	-0.9
2,107,960	+		HGI48_RS09765	0.20	+1.1
2,108,149	+		HGI48_RS09765	0.30	+1.1
2,108,149	+		HGI48_RS09765	0.30	-2.3
2,108,149	+		HGI48_RS09765	0.30	-0.1
2,108,149	+		HGI48_RS09765	0.30	-1.1
2,108,149	+				-0.3
2,108,149	+		HGI48_RS09765	0.30	-1.1
2,108,149	+		HGI48_RS09765	0.30	-1.1
2,108,150	-		HGI48_RS09765	0.30	-1.0
2,108,150	-		HGI48_RS09765	0.30	+0.4
2,108,242	+		HGI48_RS09765	0.35	-0.9
2,108,243	-		HGI48_RS09765	0.35	+0.1
2,108,243	-		HGI48_RS09765	0.35	-0.3
2,108,392	+		HGI48_RS09765	0.42	+0.8
2,108,617	+		HGI48_RS09765	0.54	+0.5
2,108,618	-		HGI48_RS09765	0.54	-0.1
2,108,619	+		HGI48_RS09765	0.54	-0.5
2,108,620	-		HGI48_RS09765	0.54	-1.7
2,108,620	-				-0.3
2,108,620	-		HGI48_RS09765	0.54	-0.1
2,108,620	-		HGI48_RS09765	0.54	+0.3
2,108,620	-		HGI48_RS09765	0.54	-0.3
2,108,620	-		HGI48_RS09765	0.54	+0.5
2,108,620	-		HGI48_RS09765	0.54	-0.5
2,108,620	-		HGI48_RS09765	0.54	+0.5
2,108,620	-		HGI48_RS09765	0.54	-0.4
2,108,643	-		HGI48_RS09765	0.55	-1.5
2,108,643	-				+1.0
2,108,646	-		HGI48_RS09765	0.55	-0.1
2,108,833	-		HGI48_RS09765	0.65	-0.1
2,108,833	-		HGI48_RS09765	0.65	+0.1
2,108,844	+		HGI48_RS09765	0.65	-1.6
2,108,845	-		HGI48_RS09765	0.65	+0.3
2,108,845	-		HGI48_RS09765	0.65	-0.5
2,108,908	-		HGI48_RS09765	0.68	+0.4
2,108,927	-		HGI48_RS09765	0.69	-0.1
2,108,927	-		HGI48_RS09765	0.69	-0.2
2,108,929	-		HGI48_RS09765	0.70	-0.1
2,108,938	+		HGI48_RS09765	0.70	-1.3
2,108,982	+		HGI48_RS09765	0.72	-0.4
2,109,208	+		HGI48_RS09765	0.84	+0.0
2,109,210	+		HGI48_RS09765	0.84	+0.3
2,109,241	+		HGI48_RS09765	0.85	-1.9
2,109,242	-		HGI48_RS09765	0.85	+0.5
2,109,316	+		HGI48_RS09765	0.89	-0.4
2,109,372	+				-0.3
2,109,372	+				+0.3
2,109,373	-				+2.3
2,109,373	-				-0.1
2,109,373	-				+0.3
2,109,394	-				+0.9
2,109,394	-				+0.1
2,109,427	+				+1.3
2,109,428	-				+1.0
2,109,440	+				-1.1
2,109,455	+				-0.3
2,109,461	+				-1.1
2,109,478	-				-1.0
2,109,485	-				+0.1
2,109,485	-				-0.3
2,109,533	-				+0.3
2,109,533	-				-2.1
2,109,533	-				+0.1
2,109,549	+				+0.3
2,109,564	-				+1.4
2,109,596	+				+0.5
2,109,596	+				+0.7
2,109,597	-				+0.3
2,109,597	-				-0.7
2,109,597	-				-0.1
2,109,597	-				+1.3
2,109,634	+				+0.7
2,109,635	-				+1.7
2,109,635	-				+0.7
2,109,653	+				+0.3
2,109,654	-				+0.2
2,109,654	-				-0.4
2,109,654	-				-0.7
2,109,654	-				+1.0
2,109,654	-				-0.2
2,109,659	+				-2.1
2,109,659	+				+0.2
2,109,659	+				+0.3
2,109,659	+				-2.3
2,109,660	-				-0.1
2,109,660	-				+0.1
2,109,809	+				-0.4
2,109,810	-				+0.2
2,110,019	+				+0.9
2,110,020	-				+2.4
2,110,040	+				+0.3
2,110,041	-				+1.3
2,110,077	+		HGI48_RS09770	0.14	-0.0
2,110,100	+		HGI48_RS09770	0.17	+0.6
2,110,101	-		HGI48_RS09770	0.17	+0.9
2,110,115	+		HGI48_RS09770	0.19	+0.9
2,110,178	-		HGI48_RS09770	0.28	-0.1
2,110,217	-		HGI48_RS09770	0.33	+0.8
2,110,242	+				+0.7
2,110,242	+		HGI48_RS09770	0.37	-0.5
2,110,278	+		HGI48_RS09770	0.41	+0.6
2,110,278	+		HGI48_RS09770	0.41	-0.7
2,110,278	+		HGI48_RS09770	0.41	-2.1
2,110,279	-		HGI48_RS09770	0.42	-0.5
2,110,279	-		HGI48_RS09770	0.42	-0.9
2,110,279	-		HGI48_RS09770	0.42	-0.7
2,110,279	-		HGI48_RS09770	0.42	+0.6
2,110,279	-		HGI48_RS09770	0.42	-0.2
2,110,279	-		HGI48_RS09770	0.42	-1.0
2,110,279	-		HGI48_RS09770	0.42	-1.0
2,110,279	-		HGI48_RS09770	0.42	-0.9
2,110,279	-		HGI48_RS09770	0.42	-1.3
2,110,279	-		HGI48_RS09770	0.42	+0.5
2,110,282	+		HGI48_RS09770	0.42	-1.7
2,110,282	+		HGI48_RS09770	0.42	+0.5
2,110,282	+				-0.3
2,110,359	+		HGI48_RS09770	0.53	+0.2
2,110,359	+		HGI48_RS09770	0.53	-1.1
2,110,359	+		HGI48_RS09770	0.53	-1.1
2,110,360	-		HGI48_RS09770	0.53	+0.2
2,110,360	-		HGI48_RS09770	0.53	-0.6
2,110,494	+		HGI48_RS09770	0.71	+0.9
2,110,494	+		HGI48_RS09770	0.71	+0.3
2,110,494	+		HGI48_RS09770	0.71	+0.5
2,110,494	+		HGI48_RS09770	0.71	+0.0
2,110,495	-		HGI48_RS09770	0.71	+1.6
2,110,495	-		HGI48_RS09770	0.71	-1.4
2,110,524	+		HGI48_RS09770	0.75	-1.5
2,110,524	+				+0.9
2,110,524	+		HGI48_RS09770	0.75	+0.9
2,110,524	+		HGI48_RS09770	0.75	+0.2
2,110,525	-				+2.3
2,110,525	-		HGI48_RS09770	0.75	+0.4
2,110,525	-		HGI48_RS09770	0.75	+0.0