Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09470

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,037,775	+				-0.1
2,037,775	+				-0.2
2,037,775	+				-0.0
2,037,775	+				-0.1
2,037,775	+				+1.3
2,037,775	+				+0.7
2,037,775	+				+1.0
2,037,776	-				+2.1
2,037,776	-				-0.2
2,037,776	-				+0.3
2,037,776	-				+0.3
2,037,776	-				+0.5
2,037,794	+				+2.5
2,037,794	+				-0.2
2,037,794	+				+0.3
2,037,794	+				+1.7
2,037,827	-				-0.4
2,037,866	+				+1.0
2,037,866	+				-0.2
2,037,866	+				+1.0
2,037,866	+				-0.2
2,037,866	+				-0.7
2,037,866	+				-1.5
2,037,867	-				-2.5
2,037,867	-				+2.2
2,037,868	+				+0.3
2,037,868	+				-1.1
2,037,868	+				-0.0
2,037,868	+				-1.2
2,037,868	+				-0.1
2,037,868	+				+0.5
2,037,869	-				-0.2
2,037,869	-				+1.6
2,037,869	-				-0.6
2,037,869	-				-2.5
2,037,869	-				-0.7
2,037,869	-				-0.2
2,037,869	-				-0.1
2,037,897	+				+0.4
2,037,898	-				+0.7
2,037,898	-				-2.7
2,038,042	+				-0.6
2,038,133	+		HGI48_RS09465	0.16	-0.7
2,038,134	-		HGI48_RS09465	0.16	-0.2
2,038,427	-		HGI48_RS09465	0.56	+0.6
2,038,427	-		HGI48_RS09465	0.56	-0.7
2,038,593	+		HGI48_RS09465	0.79	+0.1
2,038,593	+		HGI48_RS09465	0.79	-0.5
2,038,594	-		HGI48_RS09465	0.79	-0.7
2,038,604	+		HGI48_RS09465	0.81	-1.7
2,038,605	-		HGI48_RS09465	0.81	+0.8
2,038,605	-		HGI48_RS09465	0.81	+0.7
2,038,605	-		HGI48_RS09465	0.81	-0.3
2,038,614	+				+0.7
2,038,615	-		HGI48_RS09465	0.82	+0.1
2,038,644	-		HGI48_RS09465	0.86	-0.6
2,038,791	+				-0.2
2,038,792	-				-2.1
2,038,792	-				-2.6
2,038,807	+				+1.4
2,038,866	+		HGI48_RS09470	0.12	-0.7
2,038,866	+		HGI48_RS09470	0.12	-0.0
2,038,867	-		HGI48_RS09470	0.12	-0.6
2,038,867	-				+1.0
2,038,867	-		HGI48_RS09470	0.12	-1.3
2,038,867	-		HGI48_RS09470	0.12	+1.3
2,038,927	-		HGI48_RS09470	0.19	+1.8
2,038,961	+		HGI48_RS09470	0.23	+0.0
2,038,962	-		HGI48_RS09470	0.23	-1.3
2,038,968	+		HGI48_RS09470	0.24	-1.0
2,038,969	-		HGI48_RS09470	0.24	-0.1
2,038,969	-		HGI48_RS09470	0.24	+0.4
2,038,969	-		HGI48_RS09470	0.24	-0.7
2,039,273	+		HGI48_RS09470	0.57	+1.4
2,039,274	-		HGI48_RS09470	0.57	-0.2
2,039,289	+		HGI48_RS09470	0.59	+0.3
2,039,289	+		HGI48_RS09470	0.59	-2.1
2,039,289	+		HGI48_RS09470	0.59	+0.6
2,039,289	+		HGI48_RS09470	0.59	-0.4
2,039,290	-				+0.3
2,039,290	-		HGI48_RS09470	0.59	-1.4
2,039,290	-		HGI48_RS09470	0.59	-0.7
2,039,290	-		HGI48_RS09470	0.59	+0.5
2,039,290	-		HGI48_RS09470	0.59	-0.7
2,039,290	-		HGI48_RS09470	0.59	-3.1
2,039,293	+		HGI48_RS09470	0.60	-0.7
2,039,293	+		HGI48_RS09470	0.60	+0.3
2,039,293	+				-1.3
2,039,294	-		HGI48_RS09470	0.60	+0.3
2,039,294	-		HGI48_RS09470	0.60	+0.3
2,039,294	-		HGI48_RS09470	0.60	-0.7
2,039,294	-		HGI48_RS09470	0.60	-0.7
2,039,294	-		HGI48_RS09470	0.60	-0.1
2,039,294	-		HGI48_RS09470	0.60	-0.7
2,039,294	-		HGI48_RS09470	0.60	+0.3
2,039,294	-		HGI48_RS09470	0.60	-1.7
2,039,294	-		HGI48_RS09470	0.60	-1.6
2,039,294	-		HGI48_RS09470	0.60	+0.1
2,039,294	-		HGI48_RS09470	0.60	+0.1
2,039,370	-		HGI48_RS09470	0.68	+0.1
2,039,370	-		HGI48_RS09470	0.68	-0.4
2,039,390	+		HGI48_RS09470	0.70	-0.4
2,039,391	-		HGI48_RS09470	0.70	+0.5
2,039,498	+		HGI48_RS09470	0.82	-0.2
2,039,499	-		HGI48_RS09470	0.82	-0.5
2,039,499	-		HGI48_RS09470	0.82	-1.2
2,039,499	-		HGI48_RS09470	0.82	-0.2
2,039,499	-		HGI48_RS09470	0.82	+1.4
2,039,499	-		HGI48_RS09470	0.82	-0.6
2,039,499	-				+0.7
2,039,500	+		HGI48_RS09470	0.83	-1.3
2,039,500	+		HGI48_RS09470	0.83	+0.6
2,039,501	-		HGI48_RS09470	0.83	+0.5
2,039,501	-		HGI48_RS09470	0.83	-0.5
2,039,501	-		HGI48_RS09470	0.83	-0.0
2,039,501	-		HGI48_RS09470	0.83	-0.3
2,039,501	-		HGI48_RS09470	0.83	+0.6
2,039,581	+				-0.4
2,039,582	-				-0.2
2,039,585	+				+1.4
2,039,586	-				+0.6
2,039,607	+				+0.3
2,039,607	+				+1.8
2,039,608	-				+0.4
2,039,734	-				+0.0
2,039,755	+				-0.7
2,039,755	+				+0.8
2,039,755	+				+0.7
2,039,756	-				-2.1
2,039,756	-				+0.3
2,039,756	-				+0.3
2,039,770	+				+0.3
2,039,771	-				+0.6
2,039,784	+				-1.2
2,039,784	+				-1.7
2,039,784	+				+0.1
2,039,785	-				-0.3
2,039,785	-				-0.5
2,039,865	+		HGI48_RS09475	0.14	-1.6
2,039,866	-		HGI48_RS09475	0.14	-0.3
2,039,866	-		HGI48_RS09475	0.14	+0.9
2,039,936	+		HGI48_RS09475	0.29	-0.1
2,039,936	+		HGI48_RS09475	0.29	+0.8
2,039,942	-		HGI48_RS09475	0.30	+0.4
2,039,942	-		HGI48_RS09475	0.30	+0.1
2,039,942	-		HGI48_RS09475	0.30	+0.3
2,039,942	-		HGI48_RS09475	0.30	-0.2
2,039,942	-		HGI48_RS09475	0.30	-0.2
2,040,090	-		HGI48_RS09475	0.61	-0.2
2,040,182	+		HGI48_RS09475	0.80	-0.2
2,040,183	-		HGI48_RS09475	0.80	+0.8
2,040,210	-		HGI48_RS09475	0.86	-0.1
2,040,210	-		HGI48_RS09475	0.86	+0.3
2,040,336	-				-0.2
2,040,378	+				-0.9
2,040,379	-				+0.7
2,040,400	+				+0.3
2,040,400	+				-0.7
2,040,401	-				+1.0
2,040,401	-				+0.6
2,040,415	+				+0.6
2,040,455	+				-0.0
2,040,456	-				-0.2
2,040,464	-				-0.3
2,040,475	+				+1.8
2,040,482	+				-0.1
2,040,502	-				+1.0
2,040,503	+				-0.7
2,040,504	-				-1.2
2,040,504	-				-0.5
2,040,504	-				-0.1
2,040,550	-				-2.1
2,040,550	-				-2.7
2,040,550	-				+0.3
2,040,550	-				-0.3
2,040,617	-				-0.1
2,040,617	-				+0.8
2,040,617	-				-0.4
2,040,633	+				+1.3
2,040,634	-				+0.3
2,040,634	-				-0.4
2,040,645	-				-0.1
2,040,645	-				-1.2
2,040,646	+				+0.4
2,040,646	+				-1.6
2,040,646	+				+0.1
2,040,647	-				-0.7
2,040,650	+				-0.5