Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09230

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,979,763	+		HGI48_RS09225	0.24	+0.1
1,979,763	+		HGI48_RS09225	0.24	-1.0
1,979,764	-		HGI48_RS09225	0.24	+0.3
1,979,764	-		HGI48_RS09225	0.24	-0.9
1,979,821	+		HGI48_RS09225	0.29	+0.5
1,979,821	+				+0.7
1,979,821	+		HGI48_RS09225	0.29	+0.6
1,979,822	-		HGI48_RS09225	0.30	+1.5
1,979,822	-		HGI48_RS09225	0.30	-1.7
1,980,086	+		HGI48_RS09225	0.54	+0.7
1,980,086	+		HGI48_RS09225	0.54	+0.6
1,980,144	-		HGI48_RS09225	0.59	-0.1
1,980,144	-		HGI48_RS09225	0.59	+0.6
1,980,154	+		HGI48_RS09225	0.60	+0.9
1,980,154	+				+0.3
1,980,154	+				-0.3
1,980,155	-		HGI48_RS09225	0.60	-1.3
1,980,155	-		HGI48_RS09225	0.60	+1.6
1,980,200	+		HGI48_RS09225	0.64	+0.7
1,980,200	+		HGI48_RS09225	0.64	+0.3
1,980,201	-		HGI48_RS09225	0.64	-0.0
1,980,269	-		HGI48_RS09225	0.71	-0.5
1,980,374	-		HGI48_RS09225	0.80	-2.3
1,980,374	-		HGI48_RS09225	0.80	+0.5
1,980,565	-				-0.7
1,980,573	+				+1.9
1,980,573	+				-0.1
1,980,573	+				-0.9
1,980,580	+				-0.6
1,980,581	-				-0.0
1,980,581	-				+0.3
1,980,581	-				+0.3
1,980,581	-				+0.3
1,980,581	-				+1.5
1,980,643	+				+0.1
1,980,643	+				+0.8
1,980,644	-				-1.2
1,980,644	-				-0.3
1,980,668	+				-1.7
1,980,669	-				+1.3
1,980,669	-				-0.9
1,980,669	-				+0.8
1,980,670	+				+0.4
1,980,773	+				+0.6
1,980,798	+		HGI48_RS09230	0.11	-1.3
1,980,878	+		HGI48_RS09230	0.15	-0.5
1,980,879	-		HGI48_RS09230	0.15	+0.6
1,980,880	+		HGI48_RS09230	0.15	+0.6
1,980,880	+				+0.7
1,980,880	+		HGI48_RS09230	0.15	-0.0
1,980,893	+		HGI48_RS09230	0.16	+0.1
1,980,893	+		HGI48_RS09230	0.16	-2.3
1,980,894	-		HGI48_RS09230	0.16	-0.5
1,981,052	+		HGI48_RS09230	0.25	-1.7
1,981,053	-		HGI48_RS09230	0.25	+0.7
1,981,072	+		HGI48_RS09230	0.26	+1.5
1,981,072	+		HGI48_RS09230	0.26	-0.7
1,981,072	+		HGI48_RS09230	0.26	+0.5
1,981,072	+		HGI48_RS09230	0.26	+0.1
1,981,072	+		HGI48_RS09230	0.26	+1.0
1,981,072	+		HGI48_RS09230	0.26	+0.5
1,981,072	+		HGI48_RS09230	0.26	+0.4
1,981,072	+		HGI48_RS09230	0.26	+1.7
1,981,072	+		HGI48_RS09230	0.26	+0.4
1,981,073	-		HGI48_RS09230	0.26	+1.1
1,981,073	-		HGI48_RS09230	0.26	-0.4
1,981,073	-		HGI48_RS09230	0.26	+0.0
1,981,073	-		HGI48_RS09230	0.26	+0.7
1,981,073	-				+1.9
1,981,073	-		HGI48_RS09230	0.26	-1.5
1,981,073	-		HGI48_RS09230	0.26	-0.7
1,981,133	+				+3.7
1,981,369	+		HGI48_RS09230	0.42	+0.6
1,981,369	+		HGI48_RS09230	0.42	+0.9
1,981,369	+		HGI48_RS09230	0.42	+0.3
1,981,370	-				-1.3
1,981,370	-		HGI48_RS09230	0.42	-0.5
1,981,373	+		HGI48_RS09230	0.43	-0.2
1,981,374	-		HGI48_RS09230	0.43	-0.1
1,981,449	-		HGI48_RS09230	0.47	+0.3
1,981,466	+		HGI48_RS09230	0.48	+1.2
1,981,469	+		HGI48_RS09230	0.48	-0.1
1,981,469	+		HGI48_RS09230	0.48	+1.1
1,981,587	+		HGI48_RS09230	0.54	+1.1
1,981,588	-		HGI48_RS09230	0.55	-0.5
1,981,588	-		HGI48_RS09230	0.55	+0.6
1,981,588	-		HGI48_RS09230	0.55	-0.5
1,981,588	-		HGI48_RS09230	0.55	+0.3
1,981,645	+		HGI48_RS09230	0.58	-0.7
1,981,645	+		HGI48_RS09230	0.58	-0.0
1,981,645	+		HGI48_RS09230	0.58	-0.5
1,981,645	+		HGI48_RS09230	0.58	-0.4
1,981,645	+		HGI48_RS09230	0.58	+0.5
1,981,646	-		HGI48_RS09230	0.58	-0.1
1,981,648	+				+0.7
1,981,648	+		HGI48_RS09230	0.58	-0.9
1,981,655	-		HGI48_RS09230	0.58	-1.0
1,981,711	+		HGI48_RS09230	0.61	+1.9
1,981,739	-		HGI48_RS09230	0.63	+1.5
1,981,896	-		HGI48_RS09230	0.72	+0.4
1,981,896	-		HGI48_RS09230	0.72	+0.3
1,981,896	-		HGI48_RS09230	0.72	+0.3
1,981,942	+		HGI48_RS09230	0.74	+0.7
1,981,942	+		HGI48_RS09230	0.74	+1.0
1,981,942	+		HGI48_RS09230	0.74	+0.1
1,981,943	-		HGI48_RS09230	0.74	+0.3
1,981,945	+				+1.5
1,981,945	+		HGI48_RS09230	0.74	-1.9
1,981,945	+		HGI48_RS09230	0.74	+2.1
1,981,982	+		HGI48_RS09230	0.76	+0.8
1,981,982	+		HGI48_RS09230	0.76	+0.7
1,981,982	+		HGI48_RS09230	0.76	-0.4
1,981,982	+				+1.3
1,981,982	+		HGI48_RS09230	0.76	+1.0
1,981,982	+		HGI48_RS09230	0.76	-2.0
1,981,983	-				+0.7
1,981,983	-		HGI48_RS09230	0.76	-0.1
1,981,983	-		HGI48_RS09230	0.76	+1.6
1,981,983	-		HGI48_RS09230	0.76	-0.5
1,981,983	-		HGI48_RS09230	0.76	+0.6
1,982,071	+				-0.7
1,982,110	+		HGI48_RS09230	0.83	+0.6
1,982,110	+		HGI48_RS09230	0.83	+0.6
1,982,114	-				+1.0
1,982,143	+		HGI48_RS09230	0.85	+0.6
1,982,143	+		HGI48_RS09230	0.85	-0.1
1,982,144	-		HGI48_RS09230	0.85	-1.6
1,982,144	-		HGI48_RS09230	0.85	+0.6
1,982,144	-		HGI48_RS09230	0.85	+0.3
1,982,144	-		HGI48_RS09230	0.85	+1.2
1,982,155	+		HGI48_RS09230	0.86	-0.2
1,982,156	-		HGI48_RS09230	0.86	-0.7
1,982,272	+				-0.2
1,982,272	+				-2.5
1,982,273	-				-0.0
1,982,278	+				-2.0
1,982,299	+				+0.9
1,982,299	+				+0.0
1,982,300	-				-2.0
1,982,330	-				+1.0
1,982,405	+				+1.0
1,982,526	+				-0.1
1,982,536	+				+0.3
1,982,536	+				+0.1
1,982,536	+				+0.3
1,982,550	+				-2.0
1,982,550	+				+0.3
1,982,551	+				-2.0
1,982,551	-				+0.6
1,982,556	+				+0.5
1,982,597	-				+0.5
1,982,630	+				-0.3
1,982,668	+				-1.0
1,982,668	+				+0.3
1,982,721	+		HGI48_RS09235	0.10	-0.1
1,982,722	-				-0.3
1,982,725	+		HGI48_RS09235	0.11	+0.6
1,982,725	+		HGI48_RS09235	0.11	+0.8
1,982,725	+		HGI48_RS09235	0.11	+0.4
1,982,726	-		HGI48_RS09235	0.11	+0.3
1,982,793	+		HGI48_RS09235	0.23	+0.1
1,982,793	+		HGI48_RS09235	0.23	-0.5
1,982,793	+		HGI48_RS09235	0.23	-0.4
1,982,793	+		HGI48_RS09235	0.23	-0.1
1,982,794	-		HGI48_RS09235	0.23	+1.0
1,982,794	-		HGI48_RS09235	0.23	-1.7
1,982,794	-		HGI48_RS09235	0.23	-0.7
1,982,803	+		HGI48_RS09235	0.24	+1.3
1,982,857	+		HGI48_RS09235	0.34	-3.0
1,982,857	+		HGI48_RS09235	0.34	-0.7
1,982,895	+		HGI48_RS09235	0.40	-2.0
1,982,895	+		HGI48_RS09235	0.40	-0.7
1,983,090	-		HGI48_RS09235	0.74	-1.2
1,983,090	-		HGI48_RS09235	0.74	+1.1
1,983,090	-		HGI48_RS09235	0.74	+0.1
1,983,121	+		HGI48_RS09235	0.80	+0.1
1,983,121	+		HGI48_RS09235	0.80	+0.2
1,983,133	+		HGI48_RS09235	0.82	+0.3
1,983,137	-		HGI48_RS09235	0.82	+0.8
1,983,148	+		HGI48_RS09235	0.84	+0.8
1,983,149	-		HGI48_RS09235	0.84	+1.2
1,983,208	+				-0.5
1,983,208	+				+0.6
1,983,208	+				+0.0
1,983,208	+				-0.3
1,983,208	+				-1.9
1,983,209	-				-1.3
1,983,210	+				+0.7
1,983,210	+				+1.0
1,983,210	+				-0.5
1,983,245	+				-0.3
1,983,245	+				+0.7
1,983,246	-				+0.5
1,983,306	+				-1.0
1,983,321	+				+0.5
1,983,330	+				-2.3
1,983,336	+				-0.8
1,983,336	+				+0.3
1,983,336	+				-0.9
1,983,364	-				+1.3
1,983,374	+				+0.1
1,983,374	+				-0.2
1,983,375	-				-0.4