Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08530

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS08515 and HGI48_RS08520 are separated by 53 nucleotidesHGI48_RS08520 and HGI48_RS08525 overlap by 4 nucleotidesHGI48_RS08525 and HGI48_RS08530 are separated by 351 nucleotidesHGI48_RS08530 and HGI48_RS08535 are separated by 270 nucleotidesHGI48_RS08535 and HGI48_RS08540 are separated by 138 nucleotides HGI48_RS08515: HGI48_RS08515 - conjugal transfer protein TrbI, at 1,834,927 to 1,835,157 _RS08515 HGI48_RS08520: HGI48_RS08520 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,835,211 to 1,835,522 _RS08520 HGI48_RS08525: HGI48_RS08525 - DNA-damage-inducible protein J, at 1,835,519 to 1,835,803 _RS08525 HGI48_RS08530: HGI48_RS08530 - hypothetical protein, at 1,836,155 to 1,836,445 _RS08530 HGI48_RS08535: HGI48_RS08535 - integrase, at 1,836,716 to 1,837,006 _RS08535 HGI48_RS08540: HGI48_RS08540 - H-NS histone family protein, at 1,837,145 to 1,837,546 _RS08540 Position (kb) 1836 1837Strain fitness (log2 ratio) -2 -1 0 1 2at 1835.212 kb on + strandat 1835.256 kb on + strand, within HGI48_RS08520at 1835.256 kb on + strand, within HGI48_RS08520at 1835.257 kb on - strand, within HGI48_RS08520at 1835.257 kb on - strand, within HGI48_RS08520at 1835.262 kb on + strand, within HGI48_RS08520at 1835.262 kb on + strand, within HGI48_RS08520at 1835.262 kb on + strandat 1835.267 kb on + strandat 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.267 kb on + strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strand, within HGI48_RS08520at 1835.268 kb on - strandat 1835.271 kb on + strand, within HGI48_RS08520at 1835.271 kb on + strand, within HGI48_RS08520at 1835.271 kb on + strand, within HGI48_RS08520at 1835.271 kb on + strand, within HGI48_RS08520at 1835.271 kb on + strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.272 kb on - strand, within HGI48_RS08520at 1835.299 kb on + strand, within HGI48_RS08520at 1835.299 kb on + strand, within HGI48_RS08520at 1835.299 kb on + strand, within HGI48_RS08520at 1835.300 kb on - strand, within HGI48_RS08520at 1835.300 kb on - strandat 1835.337 kb on - strand, within HGI48_RS08520at 1835.359 kb on - strandat 1835.455 kb on + strand, within HGI48_RS08520at 1835.467 kb on + strand, within HGI48_RS08520at 1835.467 kb on + strand, within HGI48_RS08520at 1835.468 kb on - strand, within HGI48_RS08520at 1835.468 kb on - strand, within HGI48_RS08520at 1835.468 kb on - strand, within HGI48_RS08520at 1835.468 kb on - strand, within HGI48_RS08520at 1835.490 kb on - strand, within HGI48_RS08520at 1835.560 kb on + strand, within HGI48_RS08525at 1835.560 kb on + strand, within HGI48_RS08525at 1835.560 kb on + strand, within HGI48_RS08525at 1835.611 kb on - strand, within HGI48_RS08525at 1835.671 kb on - strand, within HGI48_RS08525at 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.792 kb on + strandat 1835.793 kb on - strandat 1835.793 kb on - strandat 1835.793 kb on - strandat 1835.805 kb on - strandat 1835.907 kb on - strandat 1835.907 kb on - strandat 1835.923 kb on + strandat 1835.923 kb on + strandat 1835.942 kb on + strandat 1835.949 kb on + strandat 1835.949 kb on + strandat 1835.949 kb on + strandat 1835.950 kb on - strandat 1835.950 kb on - strandat 1835.952 kb on + strandat 1835.956 kb on + strandat 1835.956 kb on + strandat 1835.956 kb on + strandat 1835.957 kb on - strandat 1835.957 kb on - strandat 1835.964 kb on + strandat 1835.964 kb on + strandat 1835.964 kb on + strandat 1835.964 kb on + strandat 1835.964 kb on + strandat 1835.965 kb on - strandat 1835.965 kb on - strandat 1835.965 kb on - strandat 1835.965 kb on - strandat 1835.965 kb on - strandat 1835.965 kb on - strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.968 kb on + strandat 1835.969 kb on - strandat 1835.969 kb on - strandat 1835.969 kb on - strandat 1835.969 kb on - strandat 1835.969 kb on - strandat 1835.969 kb on - strandat 1835.969 kb on - strandat 1835.971 kb on + strandat 1835.971 kb on + strandat 1835.971 kb on + strandat 1835.972 kb on - strandat 1835.972 kb on - strandat 1835.972 kb on - strandat 1836.012 kb on + strandat 1836.062 kb on - strandat 1836.084 kb on - strandat 1836.110 kb on - strandat 1836.119 kb on + strandat 1836.119 kb on + strandat 1836.120 kb on - strandat 1836.169 kb on - strandat 1836.178 kb on + strandat 1836.178 kb on + strandat 1836.192 kb on + strand, within HGI48_RS08530at 1836.193 kb on - strand, within HGI48_RS08530at 1836.211 kb on + strand, within HGI48_RS08530at 1836.211 kb on + strandat 1836.212 kb on - strand, within HGI48_RS08530at 1836.217 kb on + strandat 1836.217 kb on + strand, within HGI48_RS08530at 1836.221 kb on - strand, within HGI48_RS08530at 1836.301 kb on + strand, within HGI48_RS08530at 1836.334 kb on + strandat 1836.335 kb on - strand, within HGI48_RS08530at 1836.392 kb on + strand, within HGI48_RS08530at 1836.440 kb on + strandat 1836.440 kb on + strandat 1836.440 kb on + strandat 1836.450 kb on - strandat 1836.506 kb on - strandat 1836.506 kb on - strandat 1836.527 kb on + strandat 1836.527 kb on + strandat 1836.528 kb on - strandat 1836.560 kb on - strandat 1836.590 kb on - strandat 1836.593 kb on - strandat 1836.593 kb on - strandat 1836.642 kb on + strandat 1836.642 kb on + strandat 1836.643 kb on - strandat 1836.745 kb on + strand, within HGI48_RS08535at 1836.774 kb on + strand, within HGI48_RS08535at 1836.775 kb on - strand, within HGI48_RS08535at 1836.817 kb on + strand, within HGI48_RS08535at 1836.884 kb on - strand, within HGI48_RS08535at 1836.884 kb on - strand, within HGI48_RS08535at 1836.908 kb on + strand, within HGI48_RS08535at 1836.909 kb on - strand, within HGI48_RS08535at 1836.928 kb on + strandat 1836.982 kb on + strandat 1836.982 kb on + strandat 1836.982 kb on + strandat 1836.983 kb on - strandat 1837.024 kb on + strandat 1837.024 kb on + strandat 1837.024 kb on + strandat 1837.024 kb on + strandat 1837.024 kb on + strandat 1837.024 kb on + strandat 1837.025 kb on - strandat 1837.041 kb on + strandat 1837.095 kb on + strandat 1837.095 kb on + strandat 1837.095 kb on + strandat 1837.096 kb on - strandat 1837.096 kb on - strandat 1837.099 kb on + strandat 1837.100 kb on - strandat 1837.118 kb on + strandat 1837.118 kb on + strandat 1837.118 kb on + strandat 1837.119 kb on - strandat 1837.119 kb on - strandat 1837.119 kb on - strandat 1837.119 kb on - strandat 1837.119 kb on - strandat 1837.125 kb on + strandat 1837.125 kb on + strandat 1837.138 kb on - strandat 1837.201 kb on + strand, within HGI48_RS08540at 1837.253 kb on - strand, within HGI48_RS08540at 1837.254 kb on + strand, within HGI48_RS08540at 1837.254 kb on + strand, within HGI48_RS08540at 1837.254 kb on + strand, within HGI48_RS08540at 1837.254 kb on + strandat 1837.254 kb on + strand, within HGI48_RS08540at 1837.255 kb on - strand, within HGI48_RS08540at 1837.255 kb on - strand, within HGI48_RS08540at 1837.300 kb on + strandat 1837.300 kb on + strand, within HGI48_RS08540at 1837.307 kb on - strand, within HGI48_RS08540at 1837.353 kb on - strand, within HGI48_RS08540at 1837.365 kb on - strand, within HGI48_RS08540

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,835,212 + -0.6
1,835,256 + HGI48_RS08520 0.14 +0.8
1,835,256 + HGI48_RS08520 0.14 -1.3
1,835,257 - HGI48_RS08520 0.15 -1.1
1,835,257 - HGI48_RS08520 0.15 -2.3
1,835,262 + HGI48_RS08520 0.16 +0.6
1,835,262 + HGI48_RS08520 0.16 -0.0
1,835,262 + -0.3
1,835,267 + +0.3
1,835,267 + HGI48_RS08520 0.18 -0.0
1,835,267 + HGI48_RS08520 0.18 -1.7
1,835,267 + HGI48_RS08520 0.18 +0.5
1,835,267 + HGI48_RS08520 0.18 -1.0
1,835,267 + HGI48_RS08520 0.18 +0.5
1,835,267 + HGI48_RS08520 0.18 -0.7
1,835,267 + HGI48_RS08520 0.18 +0.6
1,835,267 + HGI48_RS08520 0.18 -0.2
1,835,268 - HGI48_RS08520 0.18 -0.9
1,835,268 - HGI48_RS08520 0.18 +0.1
1,835,268 - HGI48_RS08520 0.18 -0.7
1,835,268 - HGI48_RS08520 0.18 +0.2
1,835,268 - HGI48_RS08520 0.18 -0.7
1,835,268 - HGI48_RS08520 0.18 +2.2
1,835,268 - HGI48_RS08520 0.18 +0.2
1,835,268 - HGI48_RS08520 0.18 -0.4
1,835,268 - +0.3
1,835,271 + HGI48_RS08520 0.19 -0.4
1,835,271 + HGI48_RS08520 0.19 +0.2
1,835,271 + HGI48_RS08520 0.19 -0.7
1,835,271 + HGI48_RS08520 0.19 -0.7
1,835,271 + HGI48_RS08520 0.19 -1.7
1,835,272 - HGI48_RS08520 0.20 +0.3
1,835,272 - HGI48_RS08520 0.20 -0.2
1,835,272 - HGI48_RS08520 0.20 +0.8
1,835,272 - HGI48_RS08520 0.20 -0.5
1,835,272 - HGI48_RS08520 0.20 -0.0
1,835,272 - HGI48_RS08520 0.20 +0.1
1,835,272 - HGI48_RS08520 0.20 -1.7
1,835,299 + HGI48_RS08520 0.28 +1.5
1,835,299 + HGI48_RS08520 0.28 -0.0
1,835,299 + HGI48_RS08520 0.28 -0.3
1,835,300 - HGI48_RS08520 0.29 +0.3
1,835,300 - +1.3
1,835,337 - HGI48_RS08520 0.40 +0.4
1,835,359 - +0.3
1,835,455 + HGI48_RS08520 0.78 -0.0
1,835,467 + HGI48_RS08520 0.82 +0.5
1,835,467 + HGI48_RS08520 0.82 +0.7
1,835,468 - HGI48_RS08520 0.82 -0.7
1,835,468 - HGI48_RS08520 0.82 +0.1
1,835,468 - HGI48_RS08520 0.82 +0.0
1,835,468 - HGI48_RS08520 0.82 +0.6
1,835,490 - HGI48_RS08520 0.89 +0.1
1,835,560 + HGI48_RS08525 0.14 -1.2
1,835,560 + HGI48_RS08525 0.14 -2.0
1,835,560 + HGI48_RS08525 0.14 -0.4
1,835,611 - HGI48_RS08525 0.32 -0.9
1,835,671 - HGI48_RS08525 0.53 +0.5
1,835,792 + -0.7
1,835,792 + -0.1
1,835,792 + -0.7
1,835,792 + -0.7
1,835,792 + -0.3
1,835,792 + -1.9
1,835,792 + -1.0
1,835,792 + -0.0
1,835,792 + -1.8
1,835,793 - -1.5
1,835,793 - -1.5
1,835,793 - -0.3
1,835,805 - -0.7
1,835,907 - +0.6
1,835,907 - -0.5
1,835,923 + -0.4
1,835,923 + +0.8
1,835,942 + +0.7
1,835,949 + -0.0
1,835,949 + -2.3
1,835,949 + -1.9
1,835,950 - -1.0
1,835,950 - +0.4
1,835,952 + -0.7
1,835,956 + -0.7
1,835,956 + -0.2
1,835,956 + +0.2
1,835,957 - +0.6
1,835,957 - +1.8
1,835,964 + -0.6
1,835,964 + -0.0
1,835,964 + +0.0
1,835,964 + -0.4
1,835,964 + -0.5
1,835,965 - +1.3
1,835,965 - -0.4
1,835,965 - +0.5
1,835,965 - +1.9
1,835,965 - -0.7
1,835,965 - +1.6
1,835,968 + +0.2
1,835,968 + -0.4
1,835,968 + -2.0
1,835,968 + +1.1
1,835,968 + +0.7
1,835,968 + +0.4
1,835,968 + -0.4
1,835,968 + -0.0
1,835,968 + -0.8
1,835,968 + +0.6
1,835,968 + +1.5
1,835,969 - -0.4
1,835,969 - +0.3
1,835,969 - -1.3
1,835,969 - -0.3
1,835,969 - +1.2
1,835,969 - +0.4
1,835,969 - +0.3
1,835,971 + +0.7
1,835,971 + -0.7
1,835,971 + +0.9
1,835,972 - -1.2
1,835,972 - +1.3
1,835,972 - -1.5
1,836,012 + +0.5
1,836,062 - +0.6
1,836,084 - +0.0
1,836,110 - +0.8
1,836,119 + +0.3
1,836,119 + +0.4
1,836,120 - -0.2
1,836,169 - +0.2
1,836,178 + +0.6
1,836,178 + -0.0
1,836,192 + HGI48_RS08530 0.13 +0.5
1,836,193 - HGI48_RS08530 0.13 +0.9
1,836,211 + HGI48_RS08530 0.19 -0.0
1,836,211 + -0.7
1,836,212 - HGI48_RS08530 0.20 +1.6
1,836,217 + -1.3
1,836,217 + HGI48_RS08530 0.21 +0.3
1,836,221 - HGI48_RS08530 0.23 -2.3
1,836,301 + HGI48_RS08530 0.50 -0.0
1,836,334 + -0.7
1,836,335 - HGI48_RS08530 0.62 +1.3
1,836,392 + HGI48_RS08530 0.81 -0.7
1,836,440 + +0.6
1,836,440 + -0.1
1,836,440 + -1.3
1,836,450 - -1.3
1,836,506 - -1.5
1,836,506 - -0.2
1,836,527 + -1.7
1,836,527 + -0.5
1,836,528 - -2.0
1,836,560 - -1.4
1,836,590 - -0.1
1,836,593 - +0.1
1,836,593 - +0.6
1,836,642 + +0.6
1,836,642 + +0.1
1,836,643 - -0.1
1,836,745 + HGI48_RS08535 0.10 -2.0
1,836,774 + HGI48_RS08535 0.20 +0.6
1,836,775 - HGI48_RS08535 0.20 -0.4
1,836,817 + HGI48_RS08535 0.35 -0.1
1,836,884 - HGI48_RS08535 0.58 -0.4
1,836,884 - HGI48_RS08535 0.58 +1.1
1,836,908 + HGI48_RS08535 0.66 -2.3
1,836,909 - HGI48_RS08535 0.66 -0.3
1,836,928 + +2.3
1,836,982 + -0.1
1,836,982 + -0.1
1,836,982 + +0.7
1,836,983 - -0.7
1,837,024 + -0.1
1,837,024 + +0.6
1,837,024 + -2.0
1,837,024 + +0.8
1,837,024 + -0.3
1,837,024 + -0.7
1,837,025 - +0.5
1,837,041 + +0.8
1,837,095 + -0.7
1,837,095 + -0.1
1,837,095 + -1.9
1,837,096 - +0.6
1,837,096 - -0.3
1,837,099 + -1.3
1,837,100 - -0.4
1,837,118 + -0.4
1,837,118 + +0.6
1,837,118 + +0.5
1,837,119 - +0.6
1,837,119 - -0.0
1,837,119 - -1.7
1,837,119 - -0.2
1,837,119 - +0.9
1,837,125 + -0.4
1,837,125 + +0.3
1,837,138 - +0.8
1,837,201 + HGI48_RS08540 0.14 -0.1
1,837,253 - HGI48_RS08540 0.27 -0.1
1,837,254 + HGI48_RS08540 0.27 -2.7
1,837,254 + HGI48_RS08540 0.27 -1.0
1,837,254 + HGI48_RS08540 0.27 -0.3
1,837,254 + +1.3
1,837,254 + HGI48_RS08540 0.27 +1.6
1,837,255 - HGI48_RS08540 0.27 -0.7
1,837,255 - HGI48_RS08540 0.27 -1.7
1,837,300 + -0.3
1,837,300 + HGI48_RS08540 0.39 +0.8
1,837,307 - HGI48_RS08540 0.40 -0.4
1,837,353 - HGI48_RS08540 0.52 +0.5
1,837,365 - HGI48_RS08540 0.55 -0.7

Or see this region's nucleotide sequence