Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08530

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,835,212	+				-0.6
1,835,256	+		HGI48_RS08520	0.14	+0.8
1,835,256	+		HGI48_RS08520	0.14	-1.3
1,835,257	-		HGI48_RS08520	0.15	-1.1
1,835,257	-		HGI48_RS08520	0.15	-2.3
1,835,262	+		HGI48_RS08520	0.16	+0.6
1,835,262	+		HGI48_RS08520	0.16	-0.0
1,835,262	+				-0.3
1,835,267	+				+0.3
1,835,267	+		HGI48_RS08520	0.18	-0.0
1,835,267	+		HGI48_RS08520	0.18	-1.7
1,835,267	+		HGI48_RS08520	0.18	+0.5
1,835,267	+		HGI48_RS08520	0.18	-1.0
1,835,267	+		HGI48_RS08520	0.18	+0.5
1,835,267	+		HGI48_RS08520	0.18	-0.7
1,835,267	+		HGI48_RS08520	0.18	+0.6
1,835,267	+		HGI48_RS08520	0.18	-0.2
1,835,268	-		HGI48_RS08520	0.18	-0.9
1,835,268	-		HGI48_RS08520	0.18	+0.1
1,835,268	-		HGI48_RS08520	0.18	-0.7
1,835,268	-		HGI48_RS08520	0.18	+0.2
1,835,268	-		HGI48_RS08520	0.18	-0.7
1,835,268	-		HGI48_RS08520	0.18	+2.2
1,835,268	-		HGI48_RS08520	0.18	+0.2
1,835,268	-		HGI48_RS08520	0.18	-0.4
1,835,268	-				+0.3
1,835,271	+		HGI48_RS08520	0.19	-0.4
1,835,271	+		HGI48_RS08520	0.19	+0.2
1,835,271	+		HGI48_RS08520	0.19	-0.7
1,835,271	+		HGI48_RS08520	0.19	-0.7
1,835,271	+		HGI48_RS08520	0.19	-1.7
1,835,272	-		HGI48_RS08520	0.20	+0.3
1,835,272	-		HGI48_RS08520	0.20	-0.2
1,835,272	-		HGI48_RS08520	0.20	+0.8
1,835,272	-		HGI48_RS08520	0.20	-0.5
1,835,272	-		HGI48_RS08520	0.20	-0.0
1,835,272	-		HGI48_RS08520	0.20	+0.1
1,835,272	-		HGI48_RS08520	0.20	-1.7
1,835,299	+		HGI48_RS08520	0.28	+1.5
1,835,299	+		HGI48_RS08520	0.28	-0.0
1,835,299	+		HGI48_RS08520	0.28	-0.3
1,835,300	-		HGI48_RS08520	0.29	+0.3
1,835,300	-				+1.3
1,835,337	-		HGI48_RS08520	0.40	+0.4
1,835,359	-				+0.3
1,835,455	+		HGI48_RS08520	0.78	-0.0
1,835,467	+		HGI48_RS08520	0.82	+0.5
1,835,467	+		HGI48_RS08520	0.82	+0.7
1,835,468	-		HGI48_RS08520	0.82	-0.7
1,835,468	-		HGI48_RS08520	0.82	+0.1
1,835,468	-		HGI48_RS08520	0.82	+0.0
1,835,468	-		HGI48_RS08520	0.82	+0.6
1,835,490	-		HGI48_RS08520	0.89	+0.1
1,835,560	+		HGI48_RS08525	0.14	-1.2
1,835,560	+		HGI48_RS08525	0.14	-2.0
1,835,560	+		HGI48_RS08525	0.14	-0.4
1,835,611	-		HGI48_RS08525	0.32	-0.9
1,835,671	-		HGI48_RS08525	0.53	+0.5
1,835,792	+				-0.7
1,835,792	+				-0.1
1,835,792	+				-0.7
1,835,792	+				-0.7
1,835,792	+				-0.3
1,835,792	+				-1.9
1,835,792	+				-1.0
1,835,792	+				-0.0
1,835,792	+				-1.8
1,835,793	-				-1.5
1,835,793	-				-1.5
1,835,793	-				-0.3
1,835,805	-				-0.7
1,835,907	-				+0.6
1,835,907	-				-0.5
1,835,923	+				-0.4
1,835,923	+				+0.8
1,835,942	+				+0.7
1,835,949	+				-0.0
1,835,949	+				-2.3
1,835,949	+				-1.9
1,835,950	-				-1.0
1,835,950	-				+0.4
1,835,952	+				-0.7
1,835,956	+				-0.7
1,835,956	+				-0.2
1,835,956	+				+0.2
1,835,957	-				+0.6
1,835,957	-				+1.8
1,835,964	+				-0.6
1,835,964	+				-0.0
1,835,964	+				+0.0
1,835,964	+				-0.4
1,835,964	+				-0.5
1,835,965	-				+1.3
1,835,965	-				-0.4
1,835,965	-				+0.5
1,835,965	-				+1.9
1,835,965	-				-0.7
1,835,965	-				+1.6
1,835,968	+				+0.2
1,835,968	+				-0.4
1,835,968	+				-2.0
1,835,968	+				+1.1
1,835,968	+				+0.7
1,835,968	+				+0.4
1,835,968	+				-0.4
1,835,968	+				-0.0
1,835,968	+				-0.8
1,835,968	+				+0.6
1,835,968	+				+1.5
1,835,969	-				-0.4
1,835,969	-				+0.3
1,835,969	-				-1.3
1,835,969	-				-0.3
1,835,969	-				+1.2
1,835,969	-				+0.4
1,835,969	-				+0.3
1,835,971	+				+0.7
1,835,971	+				-0.7
1,835,971	+				+0.9
1,835,972	-				-1.2
1,835,972	-				+1.3
1,835,972	-				-1.5
1,836,012	+				+0.5
1,836,062	-				+0.6
1,836,084	-				+0.0
1,836,110	-				+0.8
1,836,119	+				+0.3
1,836,119	+				+0.4
1,836,120	-				-0.2
1,836,169	-				+0.2
1,836,178	+				+0.6
1,836,178	+				-0.0
1,836,192	+		HGI48_RS08530	0.13	+0.5
1,836,193	-		HGI48_RS08530	0.13	+0.9
1,836,211	+		HGI48_RS08530	0.19	-0.0
1,836,211	+				-0.7
1,836,212	-		HGI48_RS08530	0.20	+1.6
1,836,217	+				-1.3
1,836,217	+		HGI48_RS08530	0.21	+0.3
1,836,221	-		HGI48_RS08530	0.23	-2.3
1,836,301	+		HGI48_RS08530	0.50	-0.0
1,836,334	+				-0.7
1,836,335	-		HGI48_RS08530	0.62	+1.3
1,836,392	+		HGI48_RS08530	0.81	-0.7
1,836,440	+				+0.6
1,836,440	+				-0.1
1,836,440	+				-1.3
1,836,450	-				-1.3
1,836,506	-				-1.5
1,836,506	-				-0.2
1,836,527	+				-1.7
1,836,527	+				-0.5
1,836,528	-				-2.0
1,836,560	-				-1.4
1,836,590	-				-0.1
1,836,593	-				+0.1
1,836,593	-				+0.6
1,836,642	+				+0.6
1,836,642	+				+0.1
1,836,643	-				-0.1
1,836,745	+		HGI48_RS08535	0.10	-2.0
1,836,774	+		HGI48_RS08535	0.20	+0.6
1,836,775	-		HGI48_RS08535	0.20	-0.4
1,836,817	+		HGI48_RS08535	0.35	-0.1
1,836,884	-		HGI48_RS08535	0.58	-0.4
1,836,884	-		HGI48_RS08535	0.58	+1.1
1,836,908	+		HGI48_RS08535	0.66	-2.3
1,836,909	-		HGI48_RS08535	0.66	-0.3
1,836,928	+				+2.3
1,836,982	+				-0.1
1,836,982	+				-0.1
1,836,982	+				+0.7
1,836,983	-				-0.7
1,837,024	+				-0.1
1,837,024	+				+0.6
1,837,024	+				-2.0
1,837,024	+				+0.8
1,837,024	+				-0.3
1,837,024	+				-0.7
1,837,025	-				+0.5
1,837,041	+				+0.8
1,837,095	+				-0.7
1,837,095	+				-0.1
1,837,095	+				-1.9
1,837,096	-				+0.6
1,837,096	-				-0.3
1,837,099	+				-1.3
1,837,100	-				-0.4
1,837,118	+				-0.4
1,837,118	+				+0.6
1,837,118	+				+0.5
1,837,119	-				+0.6
1,837,119	-				-0.0
1,837,119	-				-1.7
1,837,119	-				-0.2
1,837,119	-				+0.9
1,837,125	+				-0.4
1,837,125	+				+0.3
1,837,138	-				+0.8
1,837,201	+		HGI48_RS08540	0.14	-0.1
1,837,253	-		HGI48_RS08540	0.27	-0.1
1,837,254	+		HGI48_RS08540	0.27	-2.7
1,837,254	+		HGI48_RS08540	0.27	-1.0
1,837,254	+		HGI48_RS08540	0.27	-0.3
1,837,254	+				+1.3
1,837,254	+		HGI48_RS08540	0.27	+1.6
1,837,255	-		HGI48_RS08540	0.27	-0.7
1,837,255	-		HGI48_RS08540	0.27	-1.7
1,837,300	+				-0.3
1,837,300	+		HGI48_RS08540	0.39	+0.8
1,837,307	-		HGI48_RS08540	0.40	-0.4
1,837,353	-		HGI48_RS08540	0.52	+0.5
1,837,365	-		HGI48_RS08540	0.55	-0.7