Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08515 and HGI48_RS08520 are separated by 53 nucleotides HGI48_RS08520 and HGI48_RS08525 overlap by 4 nucleotides HGI48_RS08525 and HGI48_RS08530 are separated by 351 nucleotides HGI48_RS08530 and HGI48_RS08535 are separated by 270 nucleotides HGI48_RS08535 and HGI48_RS08540 are separated by 138 nucleotides
HGI48_RS08515: HGI48_RS08515 - conjugal transfer protein TrbI, at 1,834,927 to 1,835,157
_RS08515
HGI48_RS08520: HGI48_RS08520 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,835,211 to 1,835,522
_RS08520
HGI48_RS08525: HGI48_RS08525 - DNA-damage-inducible protein J, at 1,835,519 to 1,835,803
_RS08525
HGI48_RS08530: HGI48_RS08530 - hypothetical protein, at 1,836,155 to 1,836,445
_RS08530
HGI48_RS08535: HGI48_RS08535 - integrase, at 1,836,716 to 1,837,006
_RS08535
HGI48_RS08540: HGI48_RS08540 - H-NS histone family protein, at 1,837,145 to 1,837,546
_RS08540
Position (kb)
1836
1837 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1835.212 kb on + strand at 1835.256 kb on + strand, within HGI48_RS08520 at 1835.256 kb on + strand, within HGI48_RS08520 at 1835.257 kb on - strand, within HGI48_RS08520 at 1835.257 kb on - strand, within HGI48_RS08520 at 1835.262 kb on + strand, within HGI48_RS08520 at 1835.262 kb on + strand, within HGI48_RS08520 at 1835.262 kb on + strand at 1835.267 kb on + strand at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.267 kb on + strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand, within HGI48_RS08520 at 1835.268 kb on - strand at 1835.271 kb on + strand, within HGI48_RS08520 at 1835.271 kb on + strand, within HGI48_RS08520 at 1835.271 kb on + strand, within HGI48_RS08520 at 1835.271 kb on + strand, within HGI48_RS08520 at 1835.271 kb on + strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.272 kb on - strand, within HGI48_RS08520 at 1835.299 kb on + strand, within HGI48_RS08520 at 1835.299 kb on + strand, within HGI48_RS08520 at 1835.299 kb on + strand, within HGI48_RS08520 at 1835.300 kb on - strand, within HGI48_RS08520 at 1835.300 kb on - strand at 1835.337 kb on - strand, within HGI48_RS08520 at 1835.359 kb on - strand at 1835.455 kb on + strand, within HGI48_RS08520 at 1835.467 kb on + strand, within HGI48_RS08520 at 1835.467 kb on + strand, within HGI48_RS08520 at 1835.468 kb on - strand, within HGI48_RS08520 at 1835.468 kb on - strand, within HGI48_RS08520 at 1835.468 kb on - strand, within HGI48_RS08520 at 1835.468 kb on - strand, within HGI48_RS08520 at 1835.490 kb on - strand, within HGI48_RS08520 at 1835.560 kb on + strand, within HGI48_RS08525 at 1835.560 kb on + strand, within HGI48_RS08525 at 1835.560 kb on + strand, within HGI48_RS08525 at 1835.611 kb on - strand, within HGI48_RS08525 at 1835.671 kb on - strand, within HGI48_RS08525 at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.792 kb on + strand at 1835.793 kb on - strand at 1835.793 kb on - strand at 1835.793 kb on - strand at 1835.805 kb on - strand at 1835.907 kb on - strand at 1835.907 kb on - strand at 1835.923 kb on + strand at 1835.923 kb on + strand at 1835.942 kb on + strand at 1835.949 kb on + strand at 1835.949 kb on + strand at 1835.949 kb on + strand at 1835.950 kb on - strand at 1835.950 kb on - strand at 1835.952 kb on + strand at 1835.956 kb on + strand at 1835.956 kb on + strand at 1835.956 kb on + strand at 1835.957 kb on - strand at 1835.957 kb on - strand at 1835.964 kb on + strand at 1835.964 kb on + strand at 1835.964 kb on + strand at 1835.964 kb on + strand at 1835.964 kb on + strand at 1835.965 kb on - strand at 1835.965 kb on - strand at 1835.965 kb on - strand at 1835.965 kb on - strand at 1835.965 kb on - strand at 1835.965 kb on - strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.968 kb on + strand at 1835.969 kb on - strand at 1835.969 kb on - strand at 1835.969 kb on - strand at 1835.969 kb on - strand at 1835.969 kb on - strand at 1835.969 kb on - strand at 1835.969 kb on - strand at 1835.971 kb on + strand at 1835.971 kb on + strand at 1835.971 kb on + strand at 1835.972 kb on - strand at 1835.972 kb on - strand at 1835.972 kb on - strand at 1836.012 kb on + strand at 1836.062 kb on - strand at 1836.084 kb on - strand at 1836.110 kb on - strand at 1836.119 kb on + strand at 1836.119 kb on + strand at 1836.120 kb on - strand at 1836.169 kb on - strand at 1836.178 kb on + strand at 1836.178 kb on + strand at 1836.192 kb on + strand, within HGI48_RS08530 at 1836.193 kb on - strand, within HGI48_RS08530 at 1836.211 kb on + strand, within HGI48_RS08530 at 1836.211 kb on + strand at 1836.212 kb on - strand, within HGI48_RS08530 at 1836.217 kb on + strand at 1836.217 kb on + strand, within HGI48_RS08530 at 1836.221 kb on - strand, within HGI48_RS08530 at 1836.301 kb on + strand, within HGI48_RS08530 at 1836.334 kb on + strand at 1836.335 kb on - strand, within HGI48_RS08530 at 1836.392 kb on + strand, within HGI48_RS08530 at 1836.440 kb on + strand at 1836.440 kb on + strand at 1836.440 kb on + strand at 1836.450 kb on - strand at 1836.506 kb on - strand at 1836.506 kb on - strand at 1836.527 kb on + strand at 1836.527 kb on + strand at 1836.528 kb on - strand at 1836.560 kb on - strand at 1836.590 kb on - strand at 1836.593 kb on - strand at 1836.593 kb on - strand at 1836.642 kb on + strand at 1836.642 kb on + strand at 1836.643 kb on - strand at 1836.745 kb on + strand, within HGI48_RS08535 at 1836.774 kb on + strand, within HGI48_RS08535 at 1836.775 kb on - strand, within HGI48_RS08535 at 1836.817 kb on + strand, within HGI48_RS08535 at 1836.884 kb on - strand, within HGI48_RS08535 at 1836.884 kb on - strand, within HGI48_RS08535 at 1836.908 kb on + strand, within HGI48_RS08535 at 1836.909 kb on - strand, within HGI48_RS08535 at 1836.928 kb on + strand at 1836.982 kb on + strand at 1836.982 kb on + strand at 1836.982 kb on + strand at 1836.983 kb on - strand at 1837.024 kb on + strand at 1837.024 kb on + strand at 1837.024 kb on + strand at 1837.024 kb on + strand at 1837.024 kb on + strand at 1837.024 kb on + strand at 1837.025 kb on - strand at 1837.041 kb on + strand at 1837.095 kb on + strand at 1837.095 kb on + strand at 1837.095 kb on + strand at 1837.096 kb on - strand at 1837.096 kb on - strand at 1837.099 kb on + strand at 1837.100 kb on - strand at 1837.118 kb on + strand at 1837.118 kb on + strand at 1837.118 kb on + strand at 1837.119 kb on - strand at 1837.119 kb on - strand at 1837.119 kb on - strand at 1837.119 kb on - strand at 1837.119 kb on - strand at 1837.125 kb on + strand at 1837.125 kb on + strand at 1837.138 kb on - strand at 1837.201 kb on + strand, within HGI48_RS08540 at 1837.253 kb on - strand, within HGI48_RS08540 at 1837.254 kb on + strand, within HGI48_RS08540 at 1837.254 kb on + strand, within HGI48_RS08540 at 1837.254 kb on + strand, within HGI48_RS08540 at 1837.254 kb on + strand at 1837.254 kb on + strand, within HGI48_RS08540 at 1837.255 kb on - strand, within HGI48_RS08540 at 1837.255 kb on - strand, within HGI48_RS08540 at 1837.300 kb on + strand at 1837.300 kb on + strand, within HGI48_RS08540 at 1837.307 kb on - strand, within HGI48_RS08540 at 1837.353 kb on - strand, within HGI48_RS08540 at 1837.365 kb on - strand, within HGI48_RS08540
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,835,212 + -0.6 1,835,256 + HGI48_RS08520 0.14 +0.8 1,835,256 + HGI48_RS08520 0.14 -1.3 1,835,257 - HGI48_RS08520 0.15 -1.1 1,835,257 - HGI48_RS08520 0.15 -2.3 1,835,262 + HGI48_RS08520 0.16 +0.6 1,835,262 + HGI48_RS08520 0.16 -0.0 1,835,262 + -0.3 1,835,267 + +0.3 1,835,267 + HGI48_RS08520 0.18 -0.0 1,835,267 + HGI48_RS08520 0.18 -1.7 1,835,267 + HGI48_RS08520 0.18 +0.5 1,835,267 + HGI48_RS08520 0.18 -1.0 1,835,267 + HGI48_RS08520 0.18 +0.5 1,835,267 + HGI48_RS08520 0.18 -0.7 1,835,267 + HGI48_RS08520 0.18 +0.6 1,835,267 + HGI48_RS08520 0.18 -0.2 1,835,268 - HGI48_RS08520 0.18 -0.9 1,835,268 - HGI48_RS08520 0.18 +0.1 1,835,268 - HGI48_RS08520 0.18 -0.7 1,835,268 - HGI48_RS08520 0.18 +0.2 1,835,268 - HGI48_RS08520 0.18 -0.7 1,835,268 - HGI48_RS08520 0.18 +2.2 1,835,268 - HGI48_RS08520 0.18 +0.2 1,835,268 - HGI48_RS08520 0.18 -0.4 1,835,268 - +0.3 1,835,271 + HGI48_RS08520 0.19 -0.4 1,835,271 + HGI48_RS08520 0.19 +0.2 1,835,271 + HGI48_RS08520 0.19 -0.7 1,835,271 + HGI48_RS08520 0.19 -0.7 1,835,271 + HGI48_RS08520 0.19 -1.7 1,835,272 - HGI48_RS08520 0.20 +0.3 1,835,272 - HGI48_RS08520 0.20 -0.2 1,835,272 - HGI48_RS08520 0.20 +0.8 1,835,272 - HGI48_RS08520 0.20 -0.5 1,835,272 - HGI48_RS08520 0.20 -0.0 1,835,272 - HGI48_RS08520 0.20 +0.1 1,835,272 - HGI48_RS08520 0.20 -1.7 1,835,299 + HGI48_RS08520 0.28 +1.5 1,835,299 + HGI48_RS08520 0.28 -0.0 1,835,299 + HGI48_RS08520 0.28 -0.3 1,835,300 - HGI48_RS08520 0.29 +0.3 1,835,300 - +1.3 1,835,337 - HGI48_RS08520 0.40 +0.4 1,835,359 - +0.3 1,835,455 + HGI48_RS08520 0.78 -0.0 1,835,467 + HGI48_RS08520 0.82 +0.5 1,835,467 + HGI48_RS08520 0.82 +0.7 1,835,468 - HGI48_RS08520 0.82 -0.7 1,835,468 - HGI48_RS08520 0.82 +0.1 1,835,468 - HGI48_RS08520 0.82 +0.0 1,835,468 - HGI48_RS08520 0.82 +0.6 1,835,490 - HGI48_RS08520 0.89 +0.1 1,835,560 + HGI48_RS08525 0.14 -1.2 1,835,560 + HGI48_RS08525 0.14 -2.0 1,835,560 + HGI48_RS08525 0.14 -0.4 1,835,611 - HGI48_RS08525 0.32 -0.9 1,835,671 - HGI48_RS08525 0.53 +0.5 1,835,792 + -0.7 1,835,792 + -0.1 1,835,792 + -0.7 1,835,792 + -0.7 1,835,792 + -0.3 1,835,792 + -1.9 1,835,792 + -1.0 1,835,792 + -0.0 1,835,792 + -1.8 1,835,793 - -1.5 1,835,793 - -1.5 1,835,793 - -0.3 1,835,805 - -0.7 1,835,907 - +0.6 1,835,907 - -0.5 1,835,923 + -0.4 1,835,923 + +0.8 1,835,942 + +0.7 1,835,949 + -0.0 1,835,949 + -2.3 1,835,949 + -1.9 1,835,950 - -1.0 1,835,950 - +0.4 1,835,952 + -0.7 1,835,956 + -0.7 1,835,956 + -0.2 1,835,956 + +0.2 1,835,957 - +0.6 1,835,957 - +1.8 1,835,964 + -0.6 1,835,964 + -0.0 1,835,964 + +0.0 1,835,964 + -0.4 1,835,964 + -0.5 1,835,965 - +1.3 1,835,965 - -0.4 1,835,965 - +0.5 1,835,965 - +1.9 1,835,965 - -0.7 1,835,965 - +1.6 1,835,968 + +0.2 1,835,968 + -0.4 1,835,968 + -2.0 1,835,968 + +1.1 1,835,968 + +0.7 1,835,968 + +0.4 1,835,968 + -0.4 1,835,968 + -0.0 1,835,968 + -0.8 1,835,968 + +0.6 1,835,968 + +1.5 1,835,969 - -0.4 1,835,969 - +0.3 1,835,969 - -1.3 1,835,969 - -0.3 1,835,969 - +1.2 1,835,969 - +0.4 1,835,969 - +0.3 1,835,971 + +0.7 1,835,971 + -0.7 1,835,971 + +0.9 1,835,972 - -1.2 1,835,972 - +1.3 1,835,972 - -1.5 1,836,012 + +0.5 1,836,062 - +0.6 1,836,084 - +0.0 1,836,110 - +0.8 1,836,119 + +0.3 1,836,119 + +0.4 1,836,120 - -0.2 1,836,169 - +0.2 1,836,178 + +0.6 1,836,178 + -0.0 1,836,192 + HGI48_RS08530 0.13 +0.5 1,836,193 - HGI48_RS08530 0.13 +0.9 1,836,211 + HGI48_RS08530 0.19 -0.0 1,836,211 + -0.7 1,836,212 - HGI48_RS08530 0.20 +1.6 1,836,217 + -1.3 1,836,217 + HGI48_RS08530 0.21 +0.3 1,836,221 - HGI48_RS08530 0.23 -2.3 1,836,301 + HGI48_RS08530 0.50 -0.0 1,836,334 + -0.7 1,836,335 - HGI48_RS08530 0.62 +1.3 1,836,392 + HGI48_RS08530 0.81 -0.7 1,836,440 + +0.6 1,836,440 + -0.1 1,836,440 + -1.3 1,836,450 - -1.3 1,836,506 - -1.5 1,836,506 - -0.2 1,836,527 + -1.7 1,836,527 + -0.5 1,836,528 - -2.0 1,836,560 - -1.4 1,836,590 - -0.1 1,836,593 - +0.1 1,836,593 - +0.6 1,836,642 + +0.6 1,836,642 + +0.1 1,836,643 - -0.1 1,836,745 + HGI48_RS08535 0.10 -2.0 1,836,774 + HGI48_RS08535 0.20 +0.6 1,836,775 - HGI48_RS08535 0.20 -0.4 1,836,817 + HGI48_RS08535 0.35 -0.1 1,836,884 - HGI48_RS08535 0.58 -0.4 1,836,884 - HGI48_RS08535 0.58 +1.1 1,836,908 + HGI48_RS08535 0.66 -2.3 1,836,909 - HGI48_RS08535 0.66 -0.3 1,836,928 + +2.3 1,836,982 + -0.1 1,836,982 + -0.1 1,836,982 + +0.7 1,836,983 - -0.7 1,837,024 + -0.1 1,837,024 + +0.6 1,837,024 + -2.0 1,837,024 + +0.8 1,837,024 + -0.3 1,837,024 + -0.7 1,837,025 - +0.5 1,837,041 + +0.8 1,837,095 + -0.7 1,837,095 + -0.1 1,837,095 + -1.9 1,837,096 - +0.6 1,837,096 - -0.3 1,837,099 + -1.3 1,837,100 - -0.4 1,837,118 + -0.4 1,837,118 + +0.6 1,837,118 + +0.5 1,837,119 - +0.6 1,837,119 - -0.0 1,837,119 - -1.7 1,837,119 - -0.2 1,837,119 - +0.9 1,837,125 + -0.4 1,837,125 + +0.3 1,837,138 - +0.8 1,837,201 + HGI48_RS08540 0.14 -0.1 1,837,253 - HGI48_RS08540 0.27 -0.1 1,837,254 + HGI48_RS08540 0.27 -2.7 1,837,254 + HGI48_RS08540 0.27 -1.0 1,837,254 + HGI48_RS08540 0.27 -0.3 1,837,254 + +1.3 1,837,254 + HGI48_RS08540 0.27 +1.6 1,837,255 - HGI48_RS08540 0.27 -0.7 1,837,255 - HGI48_RS08540 0.27 -1.7 1,837,300 + -0.3 1,837,300 + HGI48_RS08540 0.39 +0.8 1,837,307 - HGI48_RS08540 0.40 -0.4 1,837,353 - HGI48_RS08540 0.52 +0.5 1,837,365 - HGI48_RS08540 0.55 -0.7
Or see this region's nucleotide sequence