Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07825

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,674,401	+		HGI48_RS07815	0.52	+0.7
1,674,402	-		HGI48_RS07815	0.52	+0.4
1,674,518	+		HGI48_RS07815	0.64	+0.0
1,674,518	+		HGI48_RS07815	0.64	+0.7
1,674,519	-		HGI48_RS07815	0.64	-0.5
1,674,519	-		HGI48_RS07815	0.64	+0.7
1,674,519	-		HGI48_RS07815	0.64	+0.9
1,674,525	+		HGI48_RS07815	0.65	-2.0
1,674,526	-		HGI48_RS07815	0.65	-0.1
1,674,536	+		HGI48_RS07815	0.66	-0.2
1,674,628	+		HGI48_RS07815	0.76	+0.7
1,674,665	+		HGI48_RS07815	0.79	+1.1
1,674,666	-		HGI48_RS07815	0.79	-0.6
1,674,666	-		HGI48_RS07815	0.79	+0.6
1,674,681	-		HGI48_RS07815	0.81	+0.1
1,674,701	+		HGI48_RS07815	0.83	-0.1
1,674,702	-		HGI48_RS07815	0.83	+1.4
1,674,717	-		HGI48_RS07815	0.85	+0.1
1,674,760	+		HGI48_RS07815	0.89	-0.4
1,674,760	+		HGI48_RS07815	0.89	+0.4
1,674,760	+				-0.6
1,674,760	+		HGI48_RS07815	0.89	+0.6
1,674,760	+				-0.2
1,674,760	+		HGI48_RS07815	0.89	+0.4
1,674,760	+		HGI48_RS07815	0.89	-1.1
1,674,760	+		HGI48_RS07815	0.89	+0.2
1,674,761	-		HGI48_RS07815	0.89	-0.6
1,674,761	-		HGI48_RS07815	0.89	+0.1
1,674,761	-		HGI48_RS07815	0.89	+1.2
1,674,761	-		HGI48_RS07815	0.89	-0.1
1,674,761	-		HGI48_RS07815	0.89	-0.8
1,674,764	+		HGI48_RS07815	0.89	-2.8
1,674,764	+		HGI48_RS07815	0.89	+0.1
1,674,764	+		HGI48_RS07815	0.89	+0.6
1,674,764	+				+1.1
1,674,764	+		HGI48_RS07815	0.89	-1.6
1,674,764	+		HGI48_RS07815	0.89	-0.1
1,674,764	+		HGI48_RS07815	0.89	-0.3
1,674,765	-		HGI48_RS07815	0.90	+0.1
1,674,765	-		HGI48_RS07815	0.90	-1.4
1,674,765	-		HGI48_RS07815	0.90	-1.1
1,674,765	-		HGI48_RS07815	0.90	+1.7
1,674,783	+				-0.4
1,674,783	+				+0.2
1,674,783	+				+0.8
1,674,784	-				+0.3
1,674,784	-				+0.8
1,674,787	+				+1.4
1,674,787	+				-0.2
1,674,865	-				+0.1
1,674,869	+				+0.5
1,674,869	+				-1.0
1,674,870	-				-0.1
1,674,870	-				+0.0
1,674,870	-				-1.0
1,674,870	-				+1.5
1,674,870	-				-0.1
1,674,870	-				-2.0
1,674,870	-				-0.6
1,674,993	+		HGI48_RS07820	0.48	-1.3
1,674,993	+		HGI48_RS07820	0.48	-1.0
1,674,993	+		HGI48_RS07820	0.48	-0.4
1,674,994	-		HGI48_RS07820	0.48	+0.4
1,674,994	-		HGI48_RS07820	0.48	-0.6
1,674,994	-		HGI48_RS07820	0.48	+0.7
1,674,994	-				+0.4
1,675,029	+		HGI48_RS07820	0.62	+0.2
1,675,198	+				+1.4
1,675,199	-				+0.6
1,675,199	-				-0.9
1,675,199	-				-1.4
1,675,199	-				+0.6
1,675,202	+				-2.4
1,675,208	+				-0.2
1,675,213	+				+1.6
1,675,213	+				-0.3
1,675,220	-				-0.6
1,675,318	-				-0.2
1,675,322	-				+0.9
1,675,322	-				+0.1
1,675,438	+				+0.9
1,675,438	+				-0.6
1,675,439	-				-0.1
1,675,468	+				+0.7
1,675,469	-				-0.2
1,675,561	+		HGI48_RS07825	0.14	-0.6
1,675,561	+		HGI48_RS07825	0.14	-2.0
1,675,561	+		HGI48_RS07825	0.14	+0.8
1,675,706	-		HGI48_RS07825	0.23	-1.6
1,675,706	-		HGI48_RS07825	0.23	+0.4
1,675,711	+		HGI48_RS07825	0.23	-1.2
1,675,711	+		HGI48_RS07825	0.23	+0.9
1,675,711	+		HGI48_RS07825	0.23	-0.6
1,675,711	+		HGI48_RS07825	0.23	-0.4
1,675,712	-		HGI48_RS07825	0.24	-0.6
1,675,712	-		HGI48_RS07825	0.24	-0.1
1,675,712	-		HGI48_RS07825	0.24	+0.8
1,675,712	-				-0.2
1,675,712	-		HGI48_RS07825	0.24	+0.6
1,675,712	-		HGI48_RS07825	0.24	+0.1
1,675,715	+		HGI48_RS07825	0.24	+0.4
1,675,715	+		HGI48_RS07825	0.24	+0.0
1,675,715	+		HGI48_RS07825	0.24	-3.1
1,675,715	+				+1.4
1,675,715	+		HGI48_RS07825	0.24	+0.9
1,675,716	-				+0.4
1,675,716	-		HGI48_RS07825	0.24	-0.2
1,675,716	-		HGI48_RS07825	0.24	+0.7
1,675,716	-		HGI48_RS07825	0.24	+0.1
1,675,727	+				+0.4
1,675,727	+				+1.4
1,675,728	-		HGI48_RS07825	0.25	-1.4
1,675,739	+		HGI48_RS07825	0.25	+0.9
1,675,740	-		HGI48_RS07825	0.25	+0.0
1,675,740	-		HGI48_RS07825	0.25	-0.4
1,675,740	-		HGI48_RS07825	0.25	-0.6
1,675,740	-		HGI48_RS07825	0.25	-0.1
1,675,740	-		HGI48_RS07825	0.25	+0.9
1,675,780	+		HGI48_RS07825	0.28	-1.4
1,675,949	+		HGI48_RS07825	0.38	-0.1
1,675,949	+		HGI48_RS07825	0.38	-2.0
1,675,950	-		HGI48_RS07825	0.38	-0.3
1,675,950	-		HGI48_RS07825	0.38	-1.8
1,675,950	-		HGI48_RS07825	0.38	-0.9
1,675,950	-		HGI48_RS07825	0.38	-1.4
1,675,950	-		HGI48_RS07825	0.38	-1.2
1,675,950	-		HGI48_RS07825	0.38	-1.4
1,676,060	+		HGI48_RS07825	0.45	-0.4
1,676,138	+		HGI48_RS07825	0.49	-1.6
1,676,138	+		HGI48_RS07825	0.49	-0.8
1,676,139	-		HGI48_RS07825	0.49	-0.9
1,676,276	+		HGI48_RS07825	0.58	-0.1
1,676,276	+		HGI48_RS07825	0.58	-0.9
1,676,276	+		HGI48_RS07825	0.58	+0.7
1,676,276	+		HGI48_RS07825	0.58	-0.8
1,676,276	+		HGI48_RS07825	0.58	+0.5
1,676,276	+		HGI48_RS07825	0.58	-0.4
1,676,276	+		HGI48_RS07825	0.58	-0.7
1,676,276	+		HGI48_RS07825	0.58	+0.6
1,676,276	+		HGI48_RS07825	0.58	+0.5
1,676,276	+		HGI48_RS07825	0.58	-0.4
1,676,276	+		HGI48_RS07825	0.58	-0.2
1,676,277	-		HGI48_RS07825	0.58	+0.0
1,676,277	-		HGI48_RS07825	0.58	-0.6
1,676,277	-		HGI48_RS07825	0.58	+0.1
1,676,277	-		HGI48_RS07825	0.58	+0.0
1,676,277	-		HGI48_RS07825	0.58	+1.2
1,676,277	-		HGI48_RS07825	0.58	-0.9
1,676,277	-		HGI48_RS07825	0.58	-0.6
1,676,363	+		HGI48_RS07825	0.63	-0.9
1,676,380	+		HGI48_RS07825	0.64	+0.1
1,676,431	+		HGI48_RS07825	0.67	+0.4
1,676,720	+		HGI48_RS07825	0.84	-0.6
1,676,721	-		HGI48_RS07825	0.84	-0.4
1,676,802	+				-1.2
1,676,849	+				-0.6
1,676,945	+				-0.3
1,676,946	-				-1.1
1,676,946	-				+0.0
1,676,975	+				+0.1
1,676,975	+				-0.5
1,676,976	-				-0.7
1,676,976	-				+0.6
1,677,286	+		HGI48_RS07830	0.36	-0.5
1,677,287	-		HGI48_RS07830	0.36	+0.7
1,677,455	+		HGI48_RS07830	0.56	+0.6
1,677,506	-		HGI48_RS07830	0.62	+0.2
1,677,825	+				-0.5
1,677,827	+				+1.1
1,677,828	-				-1.5
1,677,833	+				-1.2
1,677,834	-				-1.0
1,677,834	-				-0.1
1,677,834	-				-0.4
1,677,834	-				+0.0
1,677,834	-				+0.2
1,677,856	+				-1.6
1,677,856	+				+0.5
1,677,856	+				+0.4
1,677,856	+				-0.1
1,677,856	+				-0.9
1,677,856	+				+2.8
1,677,856	+				-0.0
1,677,856	+				+0.7
1,677,856	+				-1.1
1,677,856	+				+0.8
1,677,857	-				-1.6
1,677,857	-				-0.3
1,677,857	-				-0.2
1,677,857	-				+0.6
1,677,857	-				-0.1
1,677,857	-				+1.1
1,677,857	-				+0.4
1,677,857	-				-1.2
1,677,857	-				-1.0
1,677,857	-				-1.8
1,677,857	-				+0.1
1,677,857	-				-2.6