Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07215

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS07215 and HGI48_RS07220 are separated by 100 nucleotides HGI48_RS07215: HGI48_RS07215 - DUF736 domain-containing protein, at 1,532,182 to 1,532,478 _RS07215 HGI48_RS07220: HGI48_RS07220 - IS21 family transposase, at 1,532,579 to 1,533,751 _RS07220 Position (kb) 1532 1533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1531.247 kb on + strandat 1531.248 kb on - strandat 1531.281 kb on + strandat 1531.358 kb on + strandat 1531.654 kb on + strandat 1531.655 kb on - strandat 1531.702 kb on - strandat 1531.798 kb on + strandat 1531.872 kb on - strandat 1532.187 kb on + strandat 1532.329 kb on + strand, within HGI48_RS07215at 1532.377 kb on + strand, within HGI48_RS07215at 1532.378 kb on - strand, within HGI48_RS07215at 1532.378 kb on - strandat 1532.378 kb on - strand, within HGI48_RS07215at 1532.422 kb on + strand, within HGI48_RS07215at 1532.422 kb on + strand, within HGI48_RS07215at 1532.423 kb on - strand, within HGI48_RS07215at 1532.423 kb on - strand, within HGI48_RS07215at 1532.494 kb on - strandat 1532.494 kb on - strandat 1532.494 kb on - strandat 1532.496 kb on - strandat 1532.496 kb on - strandat 1532.496 kb on - strandat 1532.496 kb on - strandat 1532.496 kb on - strandat 1532.496 kb on - strandat 1532.607 kb on + strandat 1532.636 kb on - strandat 1532.757 kb on - strand, within HGI48_RS07220at 1533.173 kb on - strand, within HGI48_RS07220at 1533.173 kb on - strandat 1533.335 kb on - strand, within HGI48_RS07220

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,531,247 + +0.2
1,531,248 - +0.4
1,531,281 + +0.1
1,531,358 + -0.0
1,531,654 + -0.8
1,531,655 - -0.8
1,531,702 - -1.2
1,531,798 + +1.3
1,531,872 - -1.2
1,532,187 + -2.2
1,532,329 + HGI48_RS07215 0.49 +0.4
1,532,377 + HGI48_RS07215 0.66 -0.8
1,532,378 - HGI48_RS07215 0.66 +0.6
1,532,378 - -0.2
1,532,378 - HGI48_RS07215 0.66 +0.2
1,532,422 + HGI48_RS07215 0.81 +0.6
1,532,422 + HGI48_RS07215 0.81 +0.1
1,532,423 - HGI48_RS07215 0.81 +0.4
1,532,423 - HGI48_RS07215 0.81 +0.2
1,532,494 - +2.2
1,532,494 - -2.8
1,532,494 - +0.4
1,532,496 - +0.4
1,532,496 - +0.4
1,532,496 - -0.0
1,532,496 - -0.5
1,532,496 - -1.6
1,532,496 - +0.0
1,532,607 + -0.7
1,532,636 - -0.3
1,532,757 - HGI48_RS07220 0.15 -0.2
1,533,173 - HGI48_RS07220 0.51 -1.9
1,533,173 - -1.2
1,533,335 - HGI48_RS07220 0.64 +0.4

Or see this region's nucleotide sequence