Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06890

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,460,382	+		HGI48_RS06885	0.26	-0.5
1,460,382	+		HGI48_RS06885	0.26	-1.0
1,460,382	+		HGI48_RS06885	0.26	+0.5
1,460,383	-		HGI48_RS06885	0.26	-0.7
1,460,383	-		HGI48_RS06885	0.26	+0.7
1,460,417	-		HGI48_RS06885	0.30	-0.7
1,460,500	+		HGI48_RS06885	0.39	-0.9
1,460,500	+		HGI48_RS06885	0.39	+0.2
1,460,501	-		HGI48_RS06885	0.39	-1.8
1,460,578	-		HGI48_RS06885	0.48	+0.5
1,460,826	+				-0.5
1,460,911	+		HGI48_RS06885	0.84	+0.2
1,460,911	+		HGI48_RS06885	0.84	-0.3
1,460,912	-		HGI48_RS06885	0.85	+0.0
1,460,912	-		HGI48_RS06885	0.85	-0.3
1,461,037	+				-0.0
1,461,038	-				-2.3
1,461,038	-				-1.9
1,461,038	-				+0.6
1,461,038	-				-0.3
1,461,046	+				-0.5
1,461,046	+				-1.1
1,461,046	+				+0.1
1,461,047	-				-0.4
1,461,047	-				-0.5
1,461,047	-				+1.6
1,461,047	-				-0.0
1,461,047	-				+0.8
1,461,047	-				-0.1
1,461,047	-				-1.9
1,461,050	+				+0.5
1,461,050	+				-1.3
1,461,050	+				+0.8
1,461,050	+				+0.6
1,461,051	-				+0.5
1,461,051	-				-1.5
1,461,051	-				-0.9
1,461,075	+				-0.3
1,461,075	+				-1.3
1,461,076	-				+2.8
1,461,076	-				-0.8
1,461,109	+				-0.9
1,461,109	+				-1.0
1,461,110	-				+0.5
1,461,110	-				-0.1
1,461,114	-				-0.5
1,461,114	-				-1.1
1,461,123	-				+1.3
1,461,132	+				+0.1
1,461,133	-				-1.1
1,461,194	+				-0.7
1,461,197	+				+0.5
1,461,197	+				-0.1
1,461,197	+				+0.1
1,461,197	+				-0.3
1,461,198	-				-0.8
1,461,198	-				-1.5
1,461,198	-				-1.7
1,461,211	+				-1.5
1,461,211	+				+0.7
1,461,211	+				+0.2
1,461,211	+				+0.1
1,461,212	-				-0.3
1,461,237	+				+0.8
1,461,237	+				-1.1
1,461,239	+				-0.5
1,461,239	+				-1.1
1,461,240	-				-0.4
1,461,240	-				-0.5
1,461,240	-				+0.1
1,461,254	+				+0.1
1,461,256	+				-0.5
1,461,257	-				+1.3
1,461,257	-				-1.0
1,461,257	-				-0.2
1,461,257	-				-1.9
1,461,257	-				-0.2
1,461,257	-				+0.5
1,461,278	+				+0.5
1,461,279	-				-1.3
1,461,328	+				-1.9
1,461,328	+				-1.1
1,461,328	+				+0.5
1,461,328	+				-1.4
1,461,329	-				-0.2
1,461,329	-				+0.5
1,461,329	-				+0.2
1,461,329	-				-0.3
1,461,418	+				+0.1
1,461,419	-				-1.5
1,461,547	+				+0.5
1,461,547	+		HGI48_RS06890	0.21	-0.9
1,461,548	-		HGI48_RS06890	0.21	+0.5
1,461,562	-		HGI48_RS06890	0.23	-1.1
1,461,737	-		HGI48_RS06890	0.42	+1.1
1,461,739	+		HGI48_RS06890	0.42	+0.0
1,461,740	-		HGI48_RS06890	0.42	-0.2
1,461,740	-				-0.1
1,461,740	-		HGI48_RS06890	0.42	+0.8
1,461,740	-		HGI48_RS06890	0.42	-0.1
1,461,740	-		HGI48_RS06890	0.42	+0.0
1,461,751	+		HGI48_RS06890	0.44	-1.1
1,461,751	+		HGI48_RS06890	0.44	+0.0
1,461,751	+		HGI48_RS06890	0.44	+1.6
1,461,751	+		HGI48_RS06890	0.44	+1.3
1,461,751	+		HGI48_RS06890	0.44	+1.5
1,461,751	+		HGI48_RS06890	0.44	-0.0
1,461,752	-		HGI48_RS06890	0.44	-1.5
1,461,752	-		HGI48_RS06890	0.44	+0.3
1,461,752	-		HGI48_RS06890	0.44	+1.3
1,461,752	-		HGI48_RS06890	0.44	+0.5
1,461,753	+		HGI48_RS06890	0.44	-1.3
1,461,753	+		HGI48_RS06890	0.44	+0.0
1,461,753	+		HGI48_RS06890	0.44	-0.3
1,461,753	+		HGI48_RS06890	0.44	-0.1
1,461,754	-		HGI48_RS06890	0.44	+1.2
1,461,754	-		HGI48_RS06890	0.44	+0.8
1,461,754	-		HGI48_RS06890	0.44	+1.3
1,461,820	-		HGI48_RS06890	0.51	+1.6
1,461,880	-		HGI48_RS06890	0.58	+0.8
1,461,880	-		HGI48_RS06890	0.58	+0.0
1,461,880	-		HGI48_RS06890	0.58	-0.4
1,461,926	-		HGI48_RS06890	0.63	+1.0
1,461,987	+		HGI48_RS06890	0.70	+0.2
1,461,988	-				-0.1
1,461,988	-				+1.2
1,461,988	-		HGI48_RS06890	0.70	-2.1
1,461,988	-		HGI48_RS06890	0.70	-1.3
1,461,988	-		HGI48_RS06890	0.70	+0.9
1,462,032	+		HGI48_RS06890	0.75	-0.0
1,462,032	+		HGI48_RS06890	0.75	-0.2
1,462,033	-		HGI48_RS06890	0.75	+1.0
1,462,033	-		HGI48_RS06890	0.75	-0.3
1,462,033	-		HGI48_RS06890	0.75	+0.5
1,462,214	+				-0.3
1,462,263	-				+0.5
1,462,293	+				-0.5
1,462,294	-				-0.3
1,462,306	-				-1.9
1,462,352	+				-0.5
1,462,352	+				+0.2
1,462,353	-				+0.9
1,462,353	-				-0.5
1,462,355	+				+0.5
1,462,356	-				+0.0
1,462,356	-				+1.1
1,462,356	-				-1.5
1,462,359	+				+0.6
1,462,360	-				-0.8
1,462,360	-				+0.9
1,462,360	-				-1.7
1,462,387	+				+1.5
1,462,387	+				-1.9
1,462,387	+				+0.2
1,462,417	-				+0.3
1,462,417	-				+0.5
1,462,417	-				+0.1
1,462,419	+				-0.5
1,462,419	+				+0.0
1,462,420	-				+0.0
1,462,420	-				-2.6
1,462,420	-				+0.0
1,462,420	-				-0.3
1,462,430	-				+0.2
1,462,479	-				+0.5
1,462,550	+				+0.7
1,462,550	+				-1.9
1,462,550	+				+0.1
1,462,550	+				-1.2
1,462,550	+				+0.7
1,462,551	-				+1.5
1,462,551	-				-1.1
1,462,551	-				-0.5
1,462,551	-				-1.1
1,462,551	-				+0.8
1,462,551	-				-0.1
1,462,551	-				+0.5
1,462,573	+				-0.0
1,462,573	+				-1.1
1,462,574	-				-2.1
1,462,752	+		HGI48_RS06895	0.21	+0.1
1,462,752	+		HGI48_RS06895	0.21	+0.7
1,462,753	-		HGI48_RS06895	0.21	+0.7
1,462,753	-		HGI48_RS06895	0.21	-0.3
1,462,753	-		HGI48_RS06895	0.21	+0.0
1,462,753	-		HGI48_RS06895	0.21	-0.2
1,462,758	+		HGI48_RS06895	0.22	-2.7
1,462,759	-				+0.9
1,462,800	-		HGI48_RS06895	0.26	-0.0
1,462,807	-		HGI48_RS06895	0.27	-0.5
1,462,813	+		HGI48_RS06895	0.28	-1.9
1,462,813	+				-0.1
1,462,813	+		HGI48_RS06895	0.28	-0.1
1,462,813	+		HGI48_RS06895	0.28	+0.3
1,462,813	+		HGI48_RS06895	0.28	-2.9
1,462,814	-		HGI48_RS06895	0.28	-1.1
1,462,953	-		HGI48_RS06895	0.42	-0.5
1,463,184	+		HGI48_RS06895	0.67	+0.5
1,463,184	+		HGI48_RS06895	0.67	-0.2
1,463,184	+		HGI48_RS06895	0.67	-0.2
1,463,184	+		HGI48_RS06895	0.67	-0.5
1,463,184	+		HGI48_RS06895	0.67	-0.0
1,463,185	-		HGI48_RS06895	0.67	-0.2
1,463,185	-		HGI48_RS06895	0.67	-0.6