Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06595

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,394,494	-				-0.7
1,394,559	-				-0.7
1,394,559	-				+1.9
1,394,559	-				+2.1
1,394,565	+				+0.1
1,394,566	-				-0.5
1,394,644	+				+1.1
1,394,656	+		HGI48_RS06590	0.12	-0.3
1,394,657	-		HGI48_RS06590	0.12	-0.3
1,394,657	-		HGI48_RS06590	0.12	-2.7
1,394,721	+				-0.5
1,394,722	-		HGI48_RS06590	0.21	+0.9
1,394,722	-		HGI48_RS06590	0.21	-2.0
1,394,758	+		HGI48_RS06590	0.26	-0.4
1,394,759	-		HGI48_RS06590	0.26	-1.2
1,394,885	+		HGI48_RS06590	0.44	+0.5
1,394,885	+		HGI48_RS06590	0.44	-1.8
1,394,886	-		HGI48_RS06590	0.44	-0.2
1,394,886	-				+0.5
1,394,886	-		HGI48_RS06590	0.44	+0.3
1,394,886	-		HGI48_RS06590	0.44	-0.3
1,394,886	-		HGI48_RS06590	0.44	-0.5
1,394,886	-		HGI48_RS06590	0.44	+1.1
1,394,886	-		HGI48_RS06590	0.44	+0.2
1,394,985	+		HGI48_RS06590	0.57	-1.0
1,394,993	-		HGI48_RS06590	0.59	-0.1
1,395,081	+		HGI48_RS06590	0.71	+0.1
1,395,140	-		HGI48_RS06590	0.79	-1.3
1,395,140	-		HGI48_RS06590	0.79	-0.3
1,395,193	+		HGI48_RS06590	0.86	+1.2
1,395,194	-		HGI48_RS06590	0.87	+0.6
1,395,194	-		HGI48_RS06590	0.87	-0.7
1,395,194	-		HGI48_RS06590	0.87	-2.4
1,395,194	-		HGI48_RS06590	0.87	-1.2
1,395,194	-		HGI48_RS06590	0.87	-0.5
1,395,205	+		HGI48_RS06590	0.88	+1.3
1,395,206	-		HGI48_RS06590	0.88	+0.2
1,395,224	-				-1.1
1,395,250	+				+0.1
1,395,250	+				+0.0
1,395,251	-				+1.3
1,395,251	-				-1.5
1,395,344	+				+0.6
1,395,347	+				+0.8
1,395,348	-				-0.0
1,395,358	+				-1.1
1,395,359	-				-0.0
1,395,363	-				+1.5
1,395,363	-				-0.3
1,395,380	+				+0.2
1,395,381	-				-1.1
1,395,432	+				+0.2
1,395,435	-				+0.3
1,395,458	-				-0.3
1,395,520	-				+1.8
1,395,526	+				-1.2
1,395,589	-				+1.1
1,395,592	-				+0.5
1,395,634	+		HGI48_RS06595	0.13	-1.5
1,395,634	+		HGI48_RS06595	0.13	-0.5
1,395,635	-		HGI48_RS06595	0.14	-0.7
1,395,635	-		HGI48_RS06595	0.14	+0.3
1,395,635	-		HGI48_RS06595	0.14	-0.3
1,395,637	+		HGI48_RS06595	0.14	-0.7
1,395,637	+				+0.5
1,395,638	-		HGI48_RS06595	0.14	-2.1
1,395,638	-		HGI48_RS06595	0.14	-0.5
1,395,763	-		HGI48_RS06595	0.26	-0.3
1,395,782	+				+1.2
1,395,783	-		HGI48_RS06595	0.28	+0.0
1,395,783	-		HGI48_RS06595	0.28	+0.5
1,395,783	-		HGI48_RS06595	0.28	+0.9
1,395,783	-		HGI48_RS06595	0.28	+0.1
1,395,907	+		HGI48_RS06595	0.40	+0.2
1,395,907	+				+1.5
1,395,908	-		HGI48_RS06595	0.40	+0.1
1,395,908	-				-1.1
1,395,965	+		HGI48_RS06595	0.45	+0.5
1,395,965	+		HGI48_RS06595	0.45	+0.7
1,396,011	+		HGI48_RS06595	0.49	+0.1
1,396,012	-		HGI48_RS06595	0.50	-2.3
1,396,042	+		HGI48_RS06595	0.52	+0.1
1,396,070	+		HGI48_RS06595	0.55	+0.7
1,396,070	+		HGI48_RS06595	0.55	-3.0
1,396,071	-		HGI48_RS06595	0.55	-2.8
1,396,071	-		HGI48_RS06595	0.55	-0.8
1,396,144	+		HGI48_RS06595	0.62	+1.1
1,396,145	-		HGI48_RS06595	0.62	-0.1
1,396,294	+		HGI48_RS06595	0.77	+0.3
1,396,294	+		HGI48_RS06595	0.77	-1.3
1,396,440	+				-1.4
1,396,440	+				+0.3
1,396,441	-				-2.3
1,396,441	-				-0.9
1,396,525	-				+0.8
1,396,537	+				+0.9
1,396,537	+				-0.2
1,396,537	+				+0.8
1,396,537	+				-0.0
1,396,537	+				+0.5
1,396,537	+				-1.1
1,396,537	+				+0.2
1,396,538	-				-1.8
1,396,538	-				-0.4
1,396,538	-				+0.1
1,396,538	-				+1.1
1,396,538	-				+0.3
1,396,538	-				-0.1
1,396,541	+				-0.2
1,396,541	+				-0.1
1,396,541	+				-0.5
1,396,541	+				+0.5
1,396,541	+				-0.0
1,396,541	+				-0.7
1,396,542	-				-1.5
1,396,542	-				+0.0
1,396,542	-				+0.9
1,396,542	-				-2.6
1,396,557	+				+1.8
1,396,576	+				-2.1
1,396,582	+				-0.3
1,396,582	+				-1.1
1,396,583	-				+0.5
1,396,583	-				-0.8
1,396,585	+				+0.5
1,396,586	-				+0.9
1,396,703	+		HGI48_RS06600	0.19	+0.5
1,396,703	+		HGI48_RS06600	0.19	-0.1
1,396,703	+		HGI48_RS06600	0.19	-1.5
1,396,762	-				-0.5
1,396,763	+				+1.1
1,396,763	+				+0.5
1,396,763	+		HGI48_RS06600	0.28	+0.9
1,396,763	+		HGI48_RS06600	0.28	-2.3
1,396,763	+		HGI48_RS06600	0.28	+0.6
1,396,764	-		HGI48_RS06600	0.28	+0.6
1,396,764	-		HGI48_RS06600	0.28	-1.2
1,396,808	+		HGI48_RS06600	0.34	+0.1
1,396,808	+		HGI48_RS06600	0.34	+0.5
1,396,818	-		HGI48_RS06600	0.35	-1.3
1,396,937	+		HGI48_RS06600	0.52	-2.3
1,396,937	+		HGI48_RS06600	0.52	-0.1
1,396,937	+		HGI48_RS06600	0.52	-0.7
1,396,938	-				+2.1
1,396,938	-		HGI48_RS06600	0.52	+0.5
1,397,064	+		HGI48_RS06600	0.69	-0.7
1,397,065	-		HGI48_RS06600	0.69	-0.0
1,397,065	-		HGI48_RS06600	0.69	-0.2
1,397,098	+		HGI48_RS06600	0.74	+0.2
1,397,098	+		HGI48_RS06600	0.74	+0.2
1,397,098	+		HGI48_RS06600	0.74	-0.1
1,397,099	-		HGI48_RS06600	0.74	-0.5
1,397,102	+		HGI48_RS06600	0.74	-0.5
1,397,102	+		HGI48_RS06600	0.74	+0.2
1,397,102	+		HGI48_RS06600	0.74	+0.1
1,397,102	+		HGI48_RS06600	0.74	-0.5
1,397,102	+		HGI48_RS06600	0.74	-0.3
1,397,103	-		HGI48_RS06600	0.75	-0.3
1,397,103	-		HGI48_RS06600	0.75	+0.1
1,397,103	-		HGI48_RS06600	0.75	-0.4
1,397,103	-		HGI48_RS06600	0.75	+0.5
1,397,103	-		HGI48_RS06600	0.75	-0.7
1,397,103	-		HGI48_RS06600	0.75	+0.8
1,397,140	+		HGI48_RS06600	0.80	+0.3
1,397,141	-		HGI48_RS06600	0.80	-1.8
1,397,174	+		HGI48_RS06600	0.84	+0.8
1,397,174	+		HGI48_RS06600	0.84	-0.1
1,397,175	-		HGI48_RS06600	0.84	-0.1
1,397,175	-		HGI48_RS06600	0.84	+0.2
1,397,192	+		HGI48_RS06600	0.87	-0.3
1,397,192	+				+0.5
1,397,193	-		HGI48_RS06600	0.87	-0.2
1,397,193	-		HGI48_RS06600	0.87	-0.5
1,397,193	-		HGI48_RS06600	0.87	-1.1
1,397,193	-		HGI48_RS06600	0.87	-0.7
1,397,193	-		HGI48_RS06600	0.87	-0.4
1,397,283	+				+0.6
1,397,284	-				-0.8
1,397,285	+				-0.1
1,397,285	+				-1.8
1,397,330	+				+0.6
1,397,331	-				-0.5
1,397,345	+				-3.2
1,397,345	+				+0.5
1,397,346	-				+0.4
1,397,346	-				-1.3
1,397,346	-				+0.8
1,397,346	-				+0.3
1,397,346	-				+1.1
1,397,346	-				-0.1
1,397,353	+				+0.4
1,397,387	+				-1.8