Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS06165 and HGI48_RS06170 are separated by 61 nucleotides HGI48_RS06170 and HGI48_RS06175 are separated by 209 nucleotides HGI48_RS06175 and HGI48_RS06180 are separated by 153 nucleotides HGI48_RS06180 and HGI48_RS06185 are separated by 106 nucleotides
HGI48_RS06165: HGI48_RS06165 - transcription antiterminator/RNA stability regulator CspE, at 1,312,169 to 1,312,378
_RS06165
HGI48_RS06170: HGI48_RS06170 - fluoride efflux transporter CrcB, at 1,312,440 to 1,312,823
_RS06170
HGI48_RS06175: HGI48_RS06175 - deaminated glutathione amidase, at 1,313,033 to 1,313,821
_RS06175
HGI48_RS06180: HGI48_RS06180 - twin-arginine translocase subunit TatE, at 1,313,975 to 1,314,184
_RS06180
HGI48_RS06185: HGI48_RS06185 - lipoyl synthase, at 1,314,291 to 1,315,256
_RS06185
Position (kb) 1313
1314 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1312.058 kb on + strand at 1312.180 kb on + strand at 1312.181 kb on - strand at 1312.181 kb on - strand at 1312.254 kb on + strand, within HGI48_RS06165 at 1312.377 kb on - strand at 1312.377 kb on - strand at 1312.420 kb on + strand at 1312.452 kb on + strand at 1312.656 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.663 kb on + strand, within HGI48_RS06170 at 1312.664 kb on - strand at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.664 kb on - strand, within HGI48_RS06170 at 1312.683 kb on - strand at 1312.683 kb on - strand, within HGI48_RS06170 at 1312.742 kb on + strand, within HGI48_RS06170 at 1312.742 kb on + strand, within HGI48_RS06170 at 1312.743 kb on - strand, within HGI48_RS06170 at 1312.746 kb on - strand, within HGI48_RS06170 at 1312.809 kb on + strand at 1312.809 kb on + strand at 1312.814 kb on + strand at 1312.815 kb on - strand at 1312.817 kb on + strand at 1312.817 kb on + strand at 1312.817 kb on + strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.818 kb on - strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.819 kb on + strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.820 kb on - strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.823 kb on + strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.824 kb on - strand at 1312.945 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.948 kb on + strand at 1312.987 kb on + strand at 1313.003 kb on - strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.013 kb on + strand at 1313.014 kb on - strand at 1313.014 kb on - strand at 1313.014 kb on - strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.017 kb on + strand at 1313.018 kb on - strand at 1313.018 kb on - strand at 1313.018 kb on - strand at 1313.070 kb on + strand at 1313.097 kb on + strand at 1313.097 kb on + strand at 1313.103 kb on + strand at 1313.173 kb on + strand at 1313.173 kb on + strand, within HGI48_RS06175 at 1313.174 kb on - strand, within HGI48_RS06175 at 1313.275 kb on + strand at 1313.285 kb on - strand, within HGI48_RS06175 at 1313.311 kb on + strand, within HGI48_RS06175 at 1313.311 kb on + strand at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.312 kb on - strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.314 kb on + strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.315 kb on - strand at 1313.315 kb on - strand, within HGI48_RS06175 at 1313.354 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand, within HGI48_RS06175 at 1313.372 kb on + strand at 1313.372 kb on + strand at 1313.373 kb on - strand, within HGI48_RS06175 at 1313.383 kb on + strand, within HGI48_RS06175 at 1313.475 kb on - strand, within HGI48_RS06175 at 1313.475 kb on - strand at 1313.621 kb on + strand, within HGI48_RS06175 at 1313.621 kb on + strand, within HGI48_RS06175 at 1313.665 kb on + strand, within HGI48_RS06175 at 1313.666 kb on - strand, within HGI48_RS06175 at 1313.725 kb on - strand, within HGI48_RS06175 at 1313.775 kb on + strand at 1313.775 kb on + strand at 1313.775 kb on + strand at 1313.776 kb on - strand at 1313.776 kb on - strand at 1313.776 kb on - strand at 1313.784 kb on + strand at 1313.785 kb on - strand at 1313.785 kb on - strand at 1313.800 kb on + strand at 1313.873 kb on - strand at 1313.880 kb on + strand at 1313.905 kb on + strand at 1313.906 kb on - strand at 1313.916 kb on - strand at 1313.931 kb on - strand at 1313.931 kb on - strand at 1313.966 kb on + strand at 1313.966 kb on + strand at 1313.966 kb on + strand at 1313.967 kb on - strand at 1313.967 kb on - strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.970 kb on + strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.971 kb on - strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.974 kb on + strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.975 kb on - strand at 1313.983 kb on + strand at 1313.990 kb on - strand at 1314.000 kb on + strand, within HGI48_RS06180 at 1314.000 kb on + strand, within HGI48_RS06180 at 1314.000 kb on + strand, within HGI48_RS06180 at 1314.000 kb on + strand, within HGI48_RS06180 at 1314.001 kb on - strand, within HGI48_RS06180 at 1314.001 kb on - strand, within HGI48_RS06180 at 1314.044 kb on - strand, within HGI48_RS06180 at 1314.044 kb on - strand, within HGI48_RS06180 at 1314.048 kb on + strand, within HGI48_RS06180 at 1314.048 kb on + strand at 1314.048 kb on + strand, within HGI48_RS06180 at 1314.048 kb on + strand, within HGI48_RS06180 at 1314.048 kb on + strand at 1314.049 kb on - strand, within HGI48_RS06180 at 1314.049 kb on - strand, within HGI48_RS06180 at 1314.052 kb on + strand, within HGI48_RS06180 at 1314.052 kb on + strand, within HGI48_RS06180 at 1314.052 kb on + strand, within HGI48_RS06180 at 1314.052 kb on + strand, within HGI48_RS06180 at 1314.052 kb on + strand, within HGI48_RS06180 at 1314.052 kb on + strand at 1314.053 kb on - strand, within HGI48_RS06180 at 1314.053 kb on - strand, within HGI48_RS06180 at 1314.176 kb on - strand at 1314.182 kb on + strand at 1314.183 kb on - strand at 1314.183 kb on - strand at 1314.272 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,312,058 + -0.8 1,312,180 + -1.1 1,312,181 - -0.3 1,312,181 - +0.5 1,312,254 + HGI48_RS06165 0.40 -0.5 1,312,377 - -1.5 1,312,377 - -1.1 1,312,420 + -2.8 1,312,452 + -2.1 1,312,656 + HGI48_RS06170 0.56 +0.5 1,312,663 + HGI48_RS06170 0.58 -0.1 1,312,663 + HGI48_RS06170 0.58 +0.7 1,312,663 + HGI48_RS06170 0.58 -0.4 1,312,664 - +0.5 1,312,664 - HGI48_RS06170 0.58 +0.7 1,312,664 - HGI48_RS06170 0.58 +0.2 1,312,664 - HGI48_RS06170 0.58 -1.1 1,312,664 - HGI48_RS06170 0.58 -0.0 1,312,683 - -1.1 1,312,683 - HGI48_RS06170 0.63 +0.7 1,312,742 + HGI48_RS06170 0.79 -1.2 1,312,742 + HGI48_RS06170 0.79 +0.3 1,312,743 - HGI48_RS06170 0.79 +1.1 1,312,746 - HGI48_RS06170 0.80 -1.3 1,312,809 + -0.2 1,312,809 + -0.5 1,312,814 + -1.1 1,312,815 - -0.2 1,312,817 + -1.1 1,312,817 + -0.2 1,312,817 + -1.1 1,312,818 - +0.1 1,312,818 - -0.1 1,312,818 - -0.5 1,312,818 - +0.5 1,312,818 - +1.7 1,312,819 + -0.1 1,312,819 + -1.1 1,312,819 + +0.6 1,312,819 + +1.3 1,312,819 + +1.5 1,312,819 + -0.3 1,312,819 + -0.7 1,312,819 + +0.5 1,312,819 + +0.5 1,312,819 + +0.4 1,312,819 + -0.0 1,312,819 + -1.5 1,312,820 - +0.0 1,312,820 - +0.8 1,312,820 - +0.3 1,312,820 - -1.1 1,312,820 - +0.3 1,312,820 - -0.2 1,312,820 - +0.1 1,312,820 - -1.7 1,312,820 - -0.7 1,312,820 - +0.5 1,312,820 - +0.5 1,312,820 - -2.3 1,312,820 - +0.7 1,312,823 + +0.0 1,312,823 + -0.3 1,312,823 + +1.7 1,312,823 + -0.8 1,312,823 + -0.9 1,312,823 + -1.1 1,312,823 + -1.5 1,312,823 + -1.2 1,312,823 + +0.7 1,312,823 + -1.6 1,312,824 - -1.2 1,312,824 - +0.9 1,312,824 - -0.5 1,312,824 - -0.3 1,312,824 - +0.2 1,312,824 - +1.7 1,312,824 - +0.2 1,312,824 - -0.5 1,312,824 - +1.2 1,312,824 - -0.2 1,312,945 + +2.5 1,312,948 + +0.1 1,312,948 + +0.5 1,312,948 + -0.1 1,312,948 + -1.1 1,312,987 + -0.1 1,313,003 - +0.5 1,313,013 + -0.6 1,313,013 + +1.1 1,313,013 + -0.5 1,313,013 + -0.3 1,313,014 - +0.3 1,313,014 - -0.6 1,313,014 - -1.1 1,313,017 + -0.2 1,313,017 + +1.5 1,313,017 + -0.9 1,313,017 + -0.1 1,313,017 + -0.7 1,313,018 - +0.5 1,313,018 - -0.3 1,313,018 - +0.5 1,313,070 + -1.1 1,313,097 + -0.7 1,313,097 + +0.2 1,313,103 + -1.8 1,313,173 + +0.9 1,313,173 + HGI48_RS06175 0.18 -1.1 1,313,174 - HGI48_RS06175 0.18 -1.3 1,313,275 + +2.1 1,313,285 - HGI48_RS06175 0.32 +0.1 1,313,311 + HGI48_RS06175 0.35 +1.0 1,313,311 + +2.9 1,313,312 - HGI48_RS06175 0.35 -0.3 1,313,312 - HGI48_RS06175 0.35 -0.8 1,313,312 - HGI48_RS06175 0.35 -0.7 1,313,314 + HGI48_RS06175 0.36 +0.3 1,313,314 + HGI48_RS06175 0.36 +1.3 1,313,314 + HGI48_RS06175 0.36 -0.8 1,313,314 + HGI48_RS06175 0.36 -0.2 1,313,314 + HGI48_RS06175 0.36 -0.1 1,313,314 + HGI48_RS06175 0.36 -0.0 1,313,315 - HGI48_RS06175 0.36 -1.5 1,313,315 - HGI48_RS06175 0.36 +0.1 1,313,315 - HGI48_RS06175 0.36 -0.3 1,313,315 - HGI48_RS06175 0.36 +0.7 1,313,315 - +0.5 1,313,315 - HGI48_RS06175 0.36 -1.3 1,313,354 + HGI48_RS06175 0.41 -1.5 1,313,372 + HGI48_RS06175 0.43 -0.8 1,313,372 + HGI48_RS06175 0.43 -1.5 1,313,372 + HGI48_RS06175 0.43 -0.8 1,313,372 + -0.1 1,313,372 + +1.3 1,313,373 - HGI48_RS06175 0.43 -0.9 1,313,383 + HGI48_RS06175 0.44 -0.7 1,313,475 - HGI48_RS06175 0.56 +1.5 1,313,475 - -0.1 1,313,621 + HGI48_RS06175 0.75 -0.1 1,313,621 + HGI48_RS06175 0.75 +0.8 1,313,665 + HGI48_RS06175 0.80 -0.6 1,313,666 - HGI48_RS06175 0.80 +0.1 1,313,725 - HGI48_RS06175 0.88 -0.3 1,313,775 + +0.4 1,313,775 + +0.5 1,313,775 + +0.5 1,313,776 - -0.3 1,313,776 - -1.6 1,313,776 - -0.7 1,313,784 + -0.5 1,313,785 - +1.0 1,313,785 - -0.6 1,313,800 + -0.5 1,313,873 - -0.1 1,313,880 + +0.7 1,313,905 + -0.7 1,313,906 - -2.0 1,313,916 - -0.1 1,313,931 - +0.9 1,313,931 - +1.5 1,313,966 + +2.3 1,313,966 + -1.5 1,313,966 + +1.1 1,313,967 - +0.1 1,313,967 - +1.2 1,313,970 + -0.3 1,313,970 + +0.5 1,313,970 + -1.0 1,313,970 + +1.6 1,313,970 + +0.2 1,313,970 + +0.4 1,313,970 + -0.2 1,313,970 + +0.5 1,313,970 + -1.0 1,313,970 + +1.3 1,313,971 - -0.5 1,313,971 - +0.2 1,313,971 - +1.0 1,313,971 - -0.3 1,313,971 - -0.9 1,313,971 - -0.7 1,313,971 - -0.1 1,313,971 - +0.1 1,313,971 - +1.5 1,313,971 - +0.5 1,313,974 + +0.5 1,313,974 + +0.1 1,313,974 + +0.8 1,313,974 + -2.0 1,313,974 + -0.3 1,313,974 + -0.8 1,313,974 + +0.5 1,313,974 + +0.8 1,313,974 + +0.5 1,313,974 + -0.9 1,313,974 + -1.0 1,313,974 + +0.9 1,313,974 + -0.2 1,313,974 + -0.9 1,313,975 - +0.1 1,313,975 - +0.5 1,313,975 - -0.8 1,313,975 - +0.8 1,313,975 - -0.0 1,313,975 - +0.1 1,313,975 - +0.2 1,313,975 - +1.2 1,313,975 - -0.8 1,313,975 - -0.3 1,313,975 - -1.8 1,313,975 - -0.2 1,313,983 + -0.3 1,313,990 - +0.8 1,314,000 + HGI48_RS06180 0.12 -0.5 1,314,000 + HGI48_RS06180 0.12 -1.9 1,314,000 + HGI48_RS06180 0.12 -1.5 1,314,000 + HGI48_RS06180 0.12 -0.8 1,314,001 - HGI48_RS06180 0.12 +0.1 1,314,001 - HGI48_RS06180 0.12 +0.4 1,314,044 - HGI48_RS06180 0.33 +0.2 1,314,044 - HGI48_RS06180 0.33 -0.1 1,314,048 + HGI48_RS06180 0.35 +0.5 1,314,048 + +1.0 1,314,048 + HGI48_RS06180 0.35 +0.2 1,314,048 + HGI48_RS06180 0.35 +1.1 1,314,048 + -0.5 1,314,049 - HGI48_RS06180 0.35 +1.2 1,314,049 - HGI48_RS06180 0.35 -1.8 1,314,052 + HGI48_RS06180 0.37 -0.9 1,314,052 + HGI48_RS06180 0.37 +1.5 1,314,052 + HGI48_RS06180 0.37 -0.5 1,314,052 + HGI48_RS06180 0.37 -0.3 1,314,052 + HGI48_RS06180 0.37 +0.3 1,314,052 + +1.1 1,314,053 - HGI48_RS06180 0.37 -0.6 1,314,053 - HGI48_RS06180 0.37 -0.7 1,314,176 - +1.4 1,314,182 + +0.3 1,314,183 - -0.7 1,314,183 - +1.0 1,314,272 + -0.5
Or see this region's nucleotide sequence