Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,261,264	+		HGI48_RS05935	0.76	-0.2
1,261,265	-		HGI48_RS05935	0.76	-1.3
1,261,265	-		HGI48_RS05935	0.76	+0.2
1,261,453	+		HGI48_RS05935	0.82	+0.6
1,261,453	+		HGI48_RS05935	0.82	+0.2
1,261,453	+		HGI48_RS05935	0.82	+0.3
1,261,478	+		HGI48_RS05935	0.83	-1.0
1,261,497	+		HGI48_RS05935	0.84	+0.1
1,261,497	+		HGI48_RS05935	0.84	-2.6
1,261,498	-				+1.6
1,261,556	-		HGI48_RS05935	0.86	-0.8
1,261,556	-		HGI48_RS05935	0.86	-0.3
1,261,556	-		HGI48_RS05935	0.86	-0.7
1,261,866	+				-1.0
1,261,896	+				+0.2
1,261,918	+				-1.4
1,261,921	+				+1.1
1,261,922	-				+0.4
1,261,926	+				-0.3
1,261,927	-				-0.1
1,262,006	+				-0.6
1,262,046	-				-1.0
1,262,063	+				-1.6
1,262,118	+		HGI48_RS05940	0.17	+0.8
1,262,118	+		HGI48_RS05940	0.17	+1.2
1,262,119	-		HGI48_RS05940	0.18	-1.0
1,262,402	-		HGI48_RS05940	0.61	-0.4
1,262,438	+		HGI48_RS05940	0.67	-0.8
1,262,438	+		HGI48_RS05940	0.67	-0.4
1,262,438	+		HGI48_RS05940	0.67	-1.4
1,262,438	+		HGI48_RS05940	0.67	-0.0
1,262,438	+		HGI48_RS05940	0.67	+0.1
1,262,438	+		HGI48_RS05940	0.67	+1.1
1,262,439	-		HGI48_RS05940	0.67	+0.0
1,262,465	+		HGI48_RS05940	0.71	-0.4
1,262,465	+				-0.4
1,262,466	-		HGI48_RS05940	0.71	+0.6
1,262,470	-		HGI48_RS05940	0.71	+0.1
1,262,485	+				+1.0
1,262,486	-		HGI48_RS05940	0.74	+0.3
1,262,530	-		HGI48_RS05940	0.81	-0.6
1,262,599	-				+0.7
1,262,663	+				-0.8
1,262,664	-				-0.1
1,262,735	-				-0.4
1,262,735	-				+1.5
1,262,757	+				+1.0
1,262,757	+				+1.4
1,262,758	-				-0.9
1,262,758	-				-0.0
1,262,760	+				-0.4
1,262,760	+				+0.3
1,262,761	-				-0.0
1,262,761	-				-0.7
1,262,782	+				-3.0
1,262,783	-				-1.0
1,262,783	-				-0.4
1,262,880	+				+1.1
1,262,880	+				-1.4
1,262,880	+				+0.2
1,262,880	+				-0.9
1,262,880	+				+1.6
1,262,881	-				-0.6
1,262,881	-				-0.9
1,262,881	-				-0.1
1,262,881	-				+0.0
1,262,881	-				+0.1
1,262,881	-				-1.2
1,262,882	+				-2.1
1,262,882	+				-0.7
1,262,882	+				+1.9
1,262,882	+				+1.4
1,262,882	+				+0.3
1,262,882	+				+1.6
1,262,882	+				-0.3
1,262,882	+				+1.7
1,262,882	+				+0.6
1,262,882	+				+1.0
1,262,882	+				-0.0
1,262,882	+				+0.6
1,262,882	+				+0.6
1,262,883	-				+1.7
1,262,883	-				-1.0
1,262,883	-				-0.8
1,262,883	-				-1.0
1,262,883	-				+0.7
1,262,883	-				-0.3
1,262,884	+				+0.6
1,262,884	+				+0.9
1,262,884	+				-1.4
1,262,884	+				-0.2
1,262,885	-				-0.4
1,262,885	-				-0.7
1,262,885	-				-1.0
1,262,885	-				-1.2
1,262,911	-				-2.0
1,262,927	+				-0.7
1,262,927	+				-0.4
1,262,927	+				+0.6
1,262,928	-				+0.2
1,262,928	-				+0.6
1,262,928	-				+0.2
1,262,944	+		HGI48_RS05945	0.11	+0.8
1,262,957	+		HGI48_RS05945	0.11	+0.3
1,262,958	-		HGI48_RS05945	0.11	+0.6
1,263,049	+		HGI48_RS05945	0.14	-1.4
1,263,060	+		HGI48_RS05945	0.15	-0.4
1,263,061	-		HGI48_RS05945	0.15	-2.0
1,263,061	-		HGI48_RS05945	0.15	-0.2
1,263,063	+		HGI48_RS05945	0.15	+0.0
1,263,064	-		HGI48_RS05945	0.15	-2.9
1,263,065	+		HGI48_RS05945	0.15	+1.0
1,263,066	-		HGI48_RS05945	0.15	+0.6
1,263,066	-		HGI48_RS05945	0.15	-0.3
1,263,066	-		HGI48_RS05945	0.15	+1.4
1,263,066	-		HGI48_RS05945	0.15	-2.0
1,263,203	+		HGI48_RS05945	0.20	+0.5
1,263,204	-		HGI48_RS05945	0.20	+0.0
1,263,204	-		HGI48_RS05945	0.20	-1.2
1,263,205	+		HGI48_RS05945	0.20	-0.6
1,263,205	+		HGI48_RS05945	0.20	+0.9
1,263,205	+				+1.3
1,263,205	+		HGI48_RS05945	0.20	+1.1
1,263,206	-		HGI48_RS05945	0.20	-1.0
1,263,206	-		HGI48_RS05945	0.20	+0.0
1,263,206	-		HGI48_RS05945	0.20	-0.8
1,263,206	-		HGI48_RS05945	0.20	-0.1
1,263,228	+		HGI48_RS05945	0.21	-1.5
1,263,228	+		HGI48_RS05945	0.21	+0.3
1,263,228	+		HGI48_RS05945	0.21	-0.6
1,263,229	-		HGI48_RS05945	0.21	+0.5
1,263,229	-		HGI48_RS05945	0.21	+0.9
1,263,247	-		HGI48_RS05945	0.22	-1.7
1,263,252	+				+1.9
1,263,253	-		HGI48_RS05945	0.22	+1.0
1,263,253	-		HGI48_RS05945	0.22	+0.5
1,263,253	-		HGI48_RS05945	0.22	+0.2
1,263,253	-		HGI48_RS05945	0.22	-0.5
1,263,256	+		HGI48_RS05945	0.22	-2.0
1,263,256	+				-1.0
1,263,256	+				+1.0
1,263,256	+		HGI48_RS05945	0.22	+0.3
1,263,257	-				-1.0
1,263,257	-		HGI48_RS05945	0.22	-0.2
1,263,257	-		HGI48_RS05945	0.22	+0.5
1,263,257	-		HGI48_RS05945	0.22	+0.1
1,263,257	-		HGI48_RS05945	0.22	+0.1
1,263,257	-		HGI48_RS05945	0.22	+0.7
1,263,257	-		HGI48_RS05945	0.22	-0.0
1,263,302	-		HGI48_RS05945	0.24	-0.3
1,263,302	-		HGI48_RS05945	0.24	-0.4
1,263,426	+		HGI48_RS05945	0.29	-0.1
1,263,426	+		HGI48_RS05945	0.29	+1.1
1,263,427	-		HGI48_RS05945	0.29	-0.9
1,263,427	-				+1.8
1,263,427	-		HGI48_RS05945	0.29	-0.5
1,263,430	+		HGI48_RS05945	0.29	+0.1
1,263,430	+		HGI48_RS05945	0.29	-2.3
1,263,430	+		HGI48_RS05945	0.29	+0.3
1,263,430	+		HGI48_RS05945	0.29	+0.1
1,263,430	-		HGI48_RS05945	0.29	+1.0
1,263,431	-		HGI48_RS05945	0.29	+0.9
1,263,431	-		HGI48_RS05945	0.29	-0.0
1,263,436	+		HGI48_RS05945	0.29	-1.8
1,263,437	-		HGI48_RS05945	0.29	+1.5
1,263,437	-		HGI48_RS05945	0.29	+0.0
1,263,608	+		HGI48_RS05945	0.35	-0.5
1,263,641	-		HGI48_RS05945	0.37	-1.0