Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05400 and HGI48_RS05405 are separated by 2 nucleotides HGI48_RS05405 and HGI48_RS05410 are separated by 27 nucleotides HGI48_RS05410 and HGI48_RS05415 are separated by 444 nucleotides
HGI48_RS05400: HGI48_RS05400 - DUF1987 domain-containing protein, at 1,132,906 to 1,133,325
_RS05400
HGI48_RS05405: HGI48_RS05405 - hypothetical protein, at 1,133,328 to 1,133,879
_RS05405
HGI48_RS05410: HGI48_RS05410 - SpoIIE family protein phosphatase, at 1,133,907 to 1,135,142
_RS05410
HGI48_RS05415: HGI48_RS05415 - hypothetical protein, at 1,135,587 to 1,136,183
_RS05415
Position (kb) 1133
1134
1135
1136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1132.908 kb on - strand at 1132.997 kb on + strand, within HGI48_RS05400 at 1132.997 kb on + strand, within HGI48_RS05400 at 1132.997 kb on + strand, within HGI48_RS05400 at 1133.050 kb on - strand at 1133.050 kb on - strand, within HGI48_RS05400 at 1133.050 kb on - strand, within HGI48_RS05400 at 1133.094 kb on - strand, within HGI48_RS05400 at 1133.162 kb on + strand, within HGI48_RS05400 at 1133.192 kb on + strand, within HGI48_RS05400 at 1133.245 kb on + strand, within HGI48_RS05400 at 1133.245 kb on + strand, within HGI48_RS05400 at 1133.245 kb on + strand, within HGI48_RS05400 at 1133.245 kb on + strand, within HGI48_RS05400 at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.246 kb on - strand at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.246 kb on - strand at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.246 kb on - strand, within HGI48_RS05400 at 1133.292 kb on + strand at 1133.311 kb on + strand at 1133.312 kb on - strand at 1133.312 kb on - strand at 1133.312 kb on - strand at 1133.312 kb on - strand at 1133.314 kb on + strand at 1133.314 kb on + strand at 1133.314 kb on + strand at 1133.314 kb on + strand at 1133.315 kb on - strand at 1133.315 kb on - strand at 1133.315 kb on - strand at 1133.315 kb on - strand at 1133.315 kb on - strand at 1133.315 kb on - strand at 1133.329 kb on + strand at 1133.329 kb on + strand at 1133.329 kb on + strand at 1133.483 kb on + strand, within HGI48_RS05405 at 1133.485 kb on + strand, within HGI48_RS05405 at 1133.486 kb on - strand, within HGI48_RS05405 at 1133.486 kb on - strand, within HGI48_RS05405 at 1133.516 kb on + strand, within HGI48_RS05405 at 1133.516 kb on + strand, within HGI48_RS05405 at 1133.516 kb on + strand, within HGI48_RS05405 at 1133.517 kb on - strand, within HGI48_RS05405 at 1133.675 kb on - strand, within HGI48_RS05405 at 1133.675 kb on - strand, within HGI48_RS05405 at 1133.675 kb on - strand, within HGI48_RS05405 at 1133.806 kb on + strand, within HGI48_RS05405 at 1133.815 kb on + strand, within HGI48_RS05405 at 1133.815 kb on + strand, within HGI48_RS05405 at 1133.816 kb on - strand, within HGI48_RS05405 at 1133.816 kb on - strand, within HGI48_RS05405 at 1133.852 kb on + strand at 1133.853 kb on - strand at 1133.863 kb on + strand at 1133.864 kb on - strand at 1133.864 kb on - strand at 1133.864 kb on - strand at 1133.864 kb on - strand at 1133.901 kb on + strand at 1133.933 kb on + strand at 1133.933 kb on + strand at 1133.982 kb on + strand at 1133.982 kb on + strand at 1133.982 kb on + strand at 1133.983 kb on - strand at 1133.983 kb on - strand at 1133.983 kb on - strand at 1133.983 kb on - strand at 1133.983 kb on - strand at 1133.983 kb on - strand at 1133.983 kb on - strand at 1133.985 kb on + strand at 1133.985 kb on + strand at 1133.985 kb on + strand at 1133.985 kb on + strand at 1133.986 kb on - strand at 1134.160 kb on + strand, within HGI48_RS05410 at 1134.160 kb on + strand, within HGI48_RS05410 at 1134.160 kb on + strand at 1134.161 kb on - strand, within HGI48_RS05410 at 1134.166 kb on + strand, within HGI48_RS05410 at 1134.166 kb on + strand, within HGI48_RS05410 at 1134.166 kb on + strand at 1134.167 kb on - strand, within HGI48_RS05410 at 1134.167 kb on - strand, within HGI48_RS05410 at 1134.167 kb on - strand, within HGI48_RS05410 at 1134.174 kb on - strand, within HGI48_RS05410 at 1134.179 kb on + strand, within HGI48_RS05410 at 1134.180 kb on - strand, within HGI48_RS05410 at 1134.181 kb on + strand, within HGI48_RS05410 at 1134.182 kb on - strand at 1134.291 kb on - strand, within HGI48_RS05410 at 1134.298 kb on + strand, within HGI48_RS05410 at 1134.298 kb on + strand, within HGI48_RS05410 at 1134.299 kb on - strand, within HGI48_RS05410 at 1134.380 kb on + strand, within HGI48_RS05410 at 1134.380 kb on + strand, within HGI48_RS05410 at 1134.381 kb on - strand, within HGI48_RS05410 at 1134.381 kb on - strand, within HGI48_RS05410 at 1134.382 kb on + strand, within HGI48_RS05410 at 1134.382 kb on + strand, within HGI48_RS05410 at 1134.383 kb on - strand, within HGI48_RS05410 at 1134.514 kb on - strand, within HGI48_RS05410 at 1134.550 kb on + strand, within HGI48_RS05410 at 1134.551 kb on - strand, within HGI48_RS05410 at 1134.654 kb on + strand, within HGI48_RS05410 at 1134.654 kb on + strand, within HGI48_RS05410 at 1134.664 kb on + strand, within HGI48_RS05410 at 1134.664 kb on + strand, within HGI48_RS05410 at 1134.664 kb on + strand, within HGI48_RS05410 at 1134.665 kb on - strand, within HGI48_RS05410 at 1134.665 kb on - strand, within HGI48_RS05410 at 1134.670 kb on - strand, within HGI48_RS05410 at 1134.670 kb on - strand, within HGI48_RS05410 at 1134.672 kb on - strand, within HGI48_RS05410 at 1134.672 kb on - strand, within HGI48_RS05410 at 1134.754 kb on + strand, within HGI48_RS05410 at 1134.755 kb on - strand, within HGI48_RS05410 at 1134.773 kb on + strand, within HGI48_RS05410 at 1134.773 kb on + strand, within HGI48_RS05410 at 1134.774 kb on - strand, within HGI48_RS05410 at 1134.774 kb on - strand, within HGI48_RS05410 at 1134.776 kb on + strand, within HGI48_RS05410 at 1134.777 kb on - strand, within HGI48_RS05410 at 1134.777 kb on - strand, within HGI48_RS05410 at 1134.826 kb on - strand, within HGI48_RS05410 at 1134.901 kb on + strand, within HGI48_RS05410 at 1134.901 kb on + strand, within HGI48_RS05410 at 1134.901 kb on + strand at 1134.916 kb on + strand, within HGI48_RS05410 at 1134.917 kb on - strand, within HGI48_RS05410 at 1134.957 kb on + strand at 1135.041 kb on - strand at 1135.073 kb on + strand at 1135.073 kb on + strand at 1135.074 kb on - strand at 1135.111 kb on - strand at 1135.164 kb on + strand at 1135.165 kb on - strand at 1135.165 kb on - strand at 1135.165 kb on - strand at 1135.165 kb on - strand at 1135.169 kb on + strand at 1135.241 kb on - strand at 1135.258 kb on + strand at 1135.262 kb on + strand at 1135.262 kb on + strand at 1135.263 kb on - strand at 1135.313 kb on + strand at 1135.314 kb on - strand at 1135.336 kb on - strand at 1135.336 kb on - strand at 1135.336 kb on - strand at 1135.346 kb on + strand at 1135.346 kb on + strand at 1135.347 kb on - strand at 1135.347 kb on - strand at 1135.447 kb on + strand at 1135.447 kb on + strand at 1135.448 kb on - strand at 1135.448 kb on - strand at 1135.529 kb on - strand at 1135.529 kb on - strand at 1135.529 kb on - strand at 1135.532 kb on - strand at 1135.546 kb on + strand at 1135.592 kb on + strand at 1135.593 kb on - strand at 1135.594 kb on + strand at 1135.655 kb on + strand, within HGI48_RS05415 at 1135.656 kb on - strand at 1135.656 kb on - strand, within HGI48_RS05415 at 1135.797 kb on - strand, within HGI48_RS05415 at 1135.797 kb on - strand, within HGI48_RS05415 at 1135.797 kb on - strand, within HGI48_RS05415 at 1135.800 kb on - strand at 1135.877 kb on + strand, within HGI48_RS05415 at 1135.950 kb on + strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.973 kb on + strand, within HGI48_RS05415 at 1135.973 kb on + strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.977 kb on - strand, within HGI48_RS05415 at 1135.977 kb on - strand, within HGI48_RS05415 at 1135.977 kb on - strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.050 kb on - strand, within HGI48_RS05415 at 1136.062 kb on + strand, within HGI48_RS05415 at 1136.062 kb on + strand, within HGI48_RS05415 at 1136.062 kb on + strand at 1136.062 kb on + strand, within HGI48_RS05415 at 1136.062 kb on + strand at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.064 kb on + strand, within HGI48_RS05415 at 1136.064 kb on + strand, within HGI48_RS05415 at 1136.064 kb on + strand at 1136.064 kb on + strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand at 1136.067 kb on - strand, within HGI48_RS05415 at 1136.073 kb on - strand, within HGI48_RS05415 at 1136.101 kb on + strand, within HGI48_RS05415
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,132,908 - -0.4 1,132,997 + HGI48_RS05400 0.22 +0.6 1,132,997 + HGI48_RS05400 0.22 -0.9 1,132,997 + HGI48_RS05400 0.22 -1.2 1,133,050 - +3.4 1,133,050 - HGI48_RS05400 0.34 -2.0 1,133,050 - HGI48_RS05400 0.34 +0.1 1,133,094 - HGI48_RS05400 0.45 +2.6 1,133,162 + HGI48_RS05400 0.61 -0.5 1,133,192 + HGI48_RS05400 0.68 -0.7 1,133,245 + HGI48_RS05400 0.81 -2.4 1,133,245 + HGI48_RS05400 0.81 -1.4 1,133,245 + HGI48_RS05400 0.81 -0.1 1,133,245 + HGI48_RS05400 0.81 -1.8 1,133,246 - HGI48_RS05400 0.81 +0.6 1,133,246 - HGI48_RS05400 0.81 -0.6 1,133,246 - HGI48_RS05400 0.81 +0.2 1,133,246 - -1.0 1,133,246 - HGI48_RS05400 0.81 -2.3 1,133,246 - HGI48_RS05400 0.81 -0.0 1,133,246 - +1.1 1,133,246 - HGI48_RS05400 0.81 -0.6 1,133,246 - HGI48_RS05400 0.81 -0.2 1,133,292 + +0.6 1,133,311 + -0.1 1,133,312 - -0.8 1,133,312 - +0.3 1,133,312 - -0.7 1,133,312 - +0.2 1,133,314 + -1.0 1,133,314 + +0.1 1,133,314 + +0.5 1,133,314 + -0.0 1,133,315 - +1.6 1,133,315 - +0.8 1,133,315 - +0.2 1,133,315 - -0.3 1,133,315 - +2.0 1,133,315 - -0.7 1,133,329 + +1.8 1,133,329 + -0.8 1,133,329 + -1.8 1,133,483 + HGI48_RS05405 0.28 -0.9 1,133,485 + HGI48_RS05405 0.28 -0.1 1,133,486 - HGI48_RS05405 0.29 -1.0 1,133,486 - HGI48_RS05405 0.29 +0.1 1,133,516 + HGI48_RS05405 0.34 -2.3 1,133,516 + HGI48_RS05405 0.34 +0.1 1,133,516 + HGI48_RS05405 0.34 -0.4 1,133,517 - HGI48_RS05405 0.34 -0.2 1,133,675 - HGI48_RS05405 0.63 +0.2 1,133,675 - HGI48_RS05405 0.63 -0.8 1,133,675 - HGI48_RS05405 0.63 +0.1 1,133,806 + HGI48_RS05405 0.87 -1.1 1,133,815 + HGI48_RS05405 0.88 -0.1 1,133,815 + HGI48_RS05405 0.88 -0.4 1,133,816 - HGI48_RS05405 0.88 +0.5 1,133,816 - HGI48_RS05405 0.88 -0.2 1,133,852 + -0.2 1,133,853 - -2.0 1,133,863 + +0.1 1,133,864 - -1.4 1,133,864 - +0.8 1,133,864 - +1.7 1,133,864 - +0.1 1,133,901 + +0.3 1,133,933 + -2.0 1,133,933 + +1.2 1,133,982 + -0.8 1,133,982 + +0.3 1,133,982 + +0.6 1,133,983 - -1.3 1,133,983 - -1.3 1,133,983 - +1.0 1,133,983 - +0.6 1,133,983 - -0.7 1,133,983 - -0.4 1,133,983 - +0.7 1,133,985 + +1.0 1,133,985 + -1.2 1,133,985 + -2.0 1,133,985 + -0.2 1,133,986 - +0.4 1,134,160 + HGI48_RS05410 0.20 +0.3 1,134,160 + HGI48_RS05410 0.20 +0.6 1,134,160 + +0.6 1,134,161 - HGI48_RS05410 0.21 -0.4 1,134,166 + HGI48_RS05410 0.21 +0.6 1,134,166 + HGI48_RS05410 0.21 -0.4 1,134,166 + +1.0 1,134,167 - HGI48_RS05410 0.21 +0.3 1,134,167 - HGI48_RS05410 0.21 -2.3 1,134,167 - HGI48_RS05410 0.21 +0.3 1,134,174 - HGI48_RS05410 0.22 -0.2 1,134,179 + HGI48_RS05410 0.22 +0.1 1,134,180 - HGI48_RS05410 0.22 +0.9 1,134,181 + HGI48_RS05410 0.22 -0.4 1,134,182 - +0.6 1,134,291 - HGI48_RS05410 0.31 -0.1 1,134,298 + HGI48_RS05410 0.32 -2.0 1,134,298 + HGI48_RS05410 0.32 +0.1 1,134,299 - HGI48_RS05410 0.32 -0.6 1,134,380 + HGI48_RS05410 0.38 -0.4 1,134,380 + HGI48_RS05410 0.38 -0.4 1,134,381 - HGI48_RS05410 0.38 -0.3 1,134,381 - HGI48_RS05410 0.38 -0.4 1,134,382 + HGI48_RS05410 0.38 -0.0 1,134,382 + HGI48_RS05410 0.38 -0.4 1,134,383 - HGI48_RS05410 0.39 +0.1 1,134,514 - HGI48_RS05410 0.49 +0.2 1,134,550 + HGI48_RS05410 0.52 -0.0 1,134,551 - HGI48_RS05410 0.52 -0.3 1,134,654 + HGI48_RS05410 0.60 -2.1 1,134,654 + HGI48_RS05410 0.60 -0.2 1,134,664 + HGI48_RS05410 0.61 -0.8 1,134,664 + HGI48_RS05410 0.61 -0.8 1,134,664 + HGI48_RS05410 0.61 +0.6 1,134,665 - HGI48_RS05410 0.61 -2.0 1,134,665 - HGI48_RS05410 0.61 -1.4 1,134,670 - HGI48_RS05410 0.62 -0.2 1,134,670 - HGI48_RS05410 0.62 -0.0 1,134,672 - HGI48_RS05410 0.62 -0.4 1,134,672 - HGI48_RS05410 0.62 +0.2 1,134,754 + HGI48_RS05410 0.69 +0.8 1,134,755 - HGI48_RS05410 0.69 +1.1 1,134,773 + HGI48_RS05410 0.70 -0.2 1,134,773 + HGI48_RS05410 0.70 +0.6 1,134,774 - HGI48_RS05410 0.70 +0.6 1,134,774 - HGI48_RS05410 0.70 -1.8 1,134,776 + HGI48_RS05410 0.70 -2.3 1,134,777 - HGI48_RS05410 0.70 +0.2 1,134,777 - HGI48_RS05410 0.70 -0.9 1,134,826 - HGI48_RS05410 0.74 -0.4 1,134,901 + HGI48_RS05410 0.80 +0.9 1,134,901 + HGI48_RS05410 0.80 -0.1 1,134,901 + -1.0 1,134,916 + HGI48_RS05410 0.82 -0.2 1,134,917 - HGI48_RS05410 0.82 +0.1 1,134,957 + -0.0 1,135,041 - -0.0 1,135,073 + +0.2 1,135,073 + +0.7 1,135,074 - +0.6 1,135,111 - +1.3 1,135,164 + -0.4 1,135,165 - -0.3 1,135,165 - +0.1 1,135,165 - +0.3 1,135,165 - +0.4 1,135,169 + -0.4 1,135,241 - -1.8 1,135,258 + +0.7 1,135,262 + -1.3 1,135,262 + -2.0 1,135,263 - -0.2 1,135,313 + +0.1 1,135,314 - +0.9 1,135,336 - -1.6 1,135,336 - -0.6 1,135,336 - +0.1 1,135,346 + +0.6 1,135,346 + -0.8 1,135,347 - +0.6 1,135,347 - -0.8 1,135,447 + +1.0 1,135,447 + -0.4 1,135,448 - +0.1 1,135,448 - +0.2 1,135,529 - +0.3 1,135,529 - -0.2 1,135,529 - -1.0 1,135,532 - -0.1 1,135,546 + -2.1 1,135,592 + -0.0 1,135,593 - +0.1 1,135,594 + +1.8 1,135,655 + HGI48_RS05415 0.11 -0.0 1,135,656 - -1.0 1,135,656 - HGI48_RS05415 0.12 -0.0 1,135,797 - HGI48_RS05415 0.35 -0.3 1,135,797 - HGI48_RS05415 0.35 -2.3 1,135,797 - HGI48_RS05415 0.35 -0.4 1,135,800 - +0.6 1,135,877 + HGI48_RS05415 0.49 -0.9 1,135,950 + HGI48_RS05415 0.61 -0.6 1,135,951 - HGI48_RS05415 0.61 +0.5 1,135,951 - HGI48_RS05415 0.61 +0.6 1,135,951 - HGI48_RS05415 0.61 +0.0 1,135,951 - HGI48_RS05415 0.61 +0.0 1,135,951 - +1.0 1,135,951 - HGI48_RS05415 0.61 -0.8 1,135,951 - HGI48_RS05415 0.61 -1.8 1,135,973 + HGI48_RS05415 0.65 -0.4 1,135,973 + HGI48_RS05415 0.65 -1.3 1,135,974 - HGI48_RS05415 0.65 +0.1 1,135,974 - HGI48_RS05415 0.65 -0.4 1,135,974 - HGI48_RS05415 0.65 -0.1 1,135,974 - HGI48_RS05415 0.65 -0.3 1,135,977 - HGI48_RS05415 0.65 -1.0 1,135,977 - HGI48_RS05415 0.65 -1.0 1,135,977 - HGI48_RS05415 0.65 -0.8 1,136,049 + HGI48_RS05415 0.77 -1.3 1,136,049 + HGI48_RS05415 0.77 -0.7 1,136,049 + HGI48_RS05415 0.77 +0.0 1,136,049 + HGI48_RS05415 0.77 +0.8 1,136,050 - HGI48_RS05415 0.78 +0.4 1,136,062 + HGI48_RS05415 0.80 +0.2 1,136,062 + HGI48_RS05415 0.80 +0.6 1,136,062 + +0.6 1,136,062 + HGI48_RS05415 0.80 +0.5 1,136,062 + -1.0 1,136,063 - HGI48_RS05415 0.80 +0.6 1,136,063 - HGI48_RS05415 0.80 -0.4 1,136,063 - HGI48_RS05415 0.80 -0.3 1,136,063 - HGI48_RS05415 0.80 -0.1 1,136,063 - HGI48_RS05415 0.80 +0.1 1,136,063 - HGI48_RS05415 0.80 -0.6 1,136,064 + HGI48_RS05415 0.80 +0.9 1,136,064 + HGI48_RS05415 0.80 -0.9 1,136,064 + -1.0 1,136,064 + HGI48_RS05415 0.80 -1.6 1,136,065 - HGI48_RS05415 0.80 +0.6 1,136,065 - HGI48_RS05415 0.80 -1.4 1,136,065 - HGI48_RS05415 0.80 +0.1 1,136,065 - HGI48_RS05415 0.80 -1.6 1,136,065 - HGI48_RS05415 0.80 -0.4 1,136,065 - HGI48_RS05415 0.80 -0.0 1,136,065 - HGI48_RS05415 0.80 -1.3 1,136,065 - +1.1 1,136,067 - HGI48_RS05415 0.80 -2.0 1,136,073 - HGI48_RS05415 0.81 -1.8 1,136,101 + HGI48_RS05415 0.86 +0.7
Or see this region's nucleotide sequence