Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04980

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04970 and HGI48_RS04975 are separated by 242 nucleotidesHGI48_RS04975 and HGI48_RS04980 overlap by 7 nucleotidesHGI48_RS04980 and HGI48_RS04985 overlap by 11 nucleotidesHGI48_RS04985 and HGI48_RS04990 overlap by 35 nucleotidesHGI48_RS04990 and HGI48_RS04995 are separated by 39 nucleotides HGI48_RS04970: HGI48_RS04970 - thymidylate synthase, at 1,043,744 to 1,044,538 _RS04970 HGI48_RS04975: HGI48_RS04975 - prepilin peptidase-dependent protein, at 1,044,781 to 1,045,272 _RS04975 HGI48_RS04980: HGI48_RS04980 - prepilin peptidase-dependent protein, at 1,045,266 to 1,045,859 _RS04980 HGI48_RS04985: HGI48_RS04985 - YgdB family protein, at 1,045,849 to 1,046,295 _RS04985 HGI48_RS04990: HGI48_RS04990 - potassium:proton antiporter, at 1,046,261 to 1,046,665 _RS04990 HGI48_RS04995: HGI48_RS04995 - pitrilysin, at 1,046,705 to 1,049,602 _RS04995 Position (kb) 1045 1046Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1044.285 kb on - strand, within HGI48_RS04970at 1044.285 kb on - strand, within HGI48_RS04970at 1044.301 kb on + strand, within HGI48_RS04970at 1044.301 kb on + strand, within HGI48_RS04970at 1044.301 kb on + strand, within HGI48_RS04970at 1044.301 kb on + strand, within HGI48_RS04970at 1044.302 kb on - strandat 1044.302 kb on - strand, within HGI48_RS04970at 1044.369 kb on - strand, within HGI48_RS04970at 1044.467 kb on + strandat 1044.490 kb on - strandat 1044.536 kb on + strandat 1044.536 kb on + strandat 1044.536 kb on + strandat 1044.537 kb on - strandat 1044.556 kb on + strandat 1044.557 kb on - strandat 1044.557 kb on - strandat 1044.642 kb on + strandat 1044.642 kb on + strandat 1044.648 kb on + strandat 1044.648 kb on + strandat 1044.648 kb on + strandat 1044.648 kb on + strandat 1044.649 kb on - strandat 1044.649 kb on - strandat 1044.649 kb on - strandat 1044.727 kb on + strandat 1044.758 kb on + strandat 1044.759 kb on - strandat 1044.759 kb on - strandat 1044.768 kb on + strandat 1044.769 kb on - strandat 1044.769 kb on - strandat 1044.833 kb on + strand, within HGI48_RS04975at 1044.833 kb on + strand, within HGI48_RS04975at 1044.833 kb on + strand, within HGI48_RS04975at 1044.834 kb on - strandat 1044.834 kb on - strand, within HGI48_RS04975at 1044.834 kb on - strand, within HGI48_RS04975at 1044.834 kb on - strand, within HGI48_RS04975at 1044.834 kb on - strand, within HGI48_RS04975at 1044.843 kb on + strand, within HGI48_RS04975at 1044.844 kb on - strand, within HGI48_RS04975at 1044.844 kb on - strand, within HGI48_RS04975at 1044.876 kb on + strandat 1044.876 kb on + strand, within HGI48_RS04975at 1044.876 kb on + strand, within HGI48_RS04975at 1044.876 kb on + strand, within HGI48_RS04975at 1044.876 kb on + strand, within HGI48_RS04975at 1044.876 kb on + strandat 1044.876 kb on + strand, within HGI48_RS04975at 1044.876 kb on + strand, within HGI48_RS04975at 1044.877 kb on - strand, within HGI48_RS04975at 1044.877 kb on - strand, within HGI48_RS04975at 1044.877 kb on - strand, within HGI48_RS04975at 1044.877 kb on - strandat 1044.950 kb on + strand, within HGI48_RS04975at 1044.950 kb on + strand, within HGI48_RS04975at 1044.951 kb on - strand, within HGI48_RS04975at 1044.951 kb on - strand, within HGI48_RS04975at 1045.027 kb on + strand, within HGI48_RS04975at 1045.266 kb on - strandat 1045.266 kb on - strandat 1045.274 kb on + strandat 1045.274 kb on + strandat 1045.275 kb on - strandat 1045.275 kb on - strandat 1045.305 kb on - strandat 1045.560 kb on + strand, within HGI48_RS04980at 1045.560 kb on + strand, within HGI48_RS04980at 1045.560 kb on + strand, within HGI48_RS04980at 1045.560 kb on + strandat 1045.560 kb on + strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.561 kb on - strand, within HGI48_RS04980at 1045.877 kb on + strandat 1045.878 kb on - strandat 1045.878 kb on - strandat 1045.878 kb on - strandat 1045.886 kb on + strandat 1045.886 kb on + strandat 1045.887 kb on - strandat 1045.916 kb on + strand, within HGI48_RS04985at 1045.917 kb on - strand, within HGI48_RS04985at 1045.931 kb on + strand, within HGI48_RS04985at 1045.931 kb on + strand, within HGI48_RS04985at 1045.931 kb on + strandat 1045.931 kb on + strand, within HGI48_RS04985at 1045.931 kb on + strand, within HGI48_RS04985at 1046.179 kb on + strand, within HGI48_RS04985at 1046.179 kb on + strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.180 kb on - strand, within HGI48_RS04985at 1046.383 kb on - strand, within HGI48_RS04990at 1046.390 kb on + strandat 1046.401 kb on - strand, within HGI48_RS04990at 1046.663 kb on + strandat 1046.664 kb on - strandat 1046.674 kb on - strandat 1046.683 kb on + strandat 1046.683 kb on + strandat 1046.683 kb on + strandat 1046.684 kb on - strandat 1046.684 kb on - strandat 1046.684 kb on - strandat 1046.719 kb on + strandat 1046.719 kb on + strandat 1046.719 kb on + strandat 1046.719 kb on + strandat 1046.720 kb on - strandat 1046.831 kb on + strandat 1046.831 kb on + strandat 1046.857 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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1,044,285 - HGI48_RS04970 0.68 -2.2
1,044,285 - HGI48_RS04970 0.68 -3.9
1,044,301 + HGI48_RS04970 0.70 -1.7
1,044,301 + HGI48_RS04970 0.70 -2.2
1,044,301 + HGI48_RS04970 0.70 -2.7
1,044,301 + HGI48_RS04970 0.70 -1.2
1,044,302 - +2.2
1,044,302 - HGI48_RS04970 0.70 -2.0
1,044,369 - HGI48_RS04970 0.79 -0.2
1,044,467 + -1.2
1,044,490 - -2.2
1,044,536 + -0.2
1,044,536 + -1.2
1,044,536 + -0.0
1,044,537 - -0.4
1,044,556 + +1.1
1,044,557 - +1.6
1,044,557 - -2.4
1,044,642 + -0.4
1,044,642 + -0.9
1,044,648 + +0.1
1,044,648 + +0.4
1,044,648 + -2.0
1,044,648 + -0.7
1,044,649 - -2.0
1,044,649 - -0.2
1,044,649 - +0.6
1,044,727 + +0.4
1,044,758 + +1.2
1,044,759 - +1.9
1,044,759 - +0.3
1,044,768 + -1.8
1,044,769 - -1.4
1,044,769 - +0.6
1,044,833 + HGI48_RS04975 0.11 -0.4
1,044,833 + HGI48_RS04975 0.11 -0.4
1,044,833 + HGI48_RS04975 0.11 +0.6
1,044,834 - +0.6
1,044,834 - HGI48_RS04975 0.11 -0.4
1,044,834 - HGI48_RS04975 0.11 -0.8
1,044,834 - HGI48_RS04975 0.11 -0.4
1,044,834 - HGI48_RS04975 0.11 +0.2
1,044,843 + HGI48_RS04975 0.13 +0.3
1,044,844 - HGI48_RS04975 0.13 +0.7
1,044,844 - HGI48_RS04975 0.13 -0.3
1,044,876 + +1.3
1,044,876 + HGI48_RS04975 0.19 -0.4
1,044,876 + HGI48_RS04975 0.19 -1.1
1,044,876 + HGI48_RS04975 0.19 -0.4
1,044,876 + HGI48_RS04975 0.19 +1.0
1,044,876 + +0.6
1,044,876 + HGI48_RS04975 0.19 -0.3
1,044,876 + HGI48_RS04975 0.19 +0.2
1,044,877 - HGI48_RS04975 0.20 +0.6
1,044,877 - HGI48_RS04975 0.20 -1.8
1,044,877 - HGI48_RS04975 0.20 +0.1
1,044,877 - +2.6
1,044,950 + HGI48_RS04975 0.34 -0.0
1,044,950 + HGI48_RS04975 0.34 -1.2
1,044,951 - HGI48_RS04975 0.35 -0.3
1,044,951 - HGI48_RS04975 0.35 -1.1
1,045,027 + HGI48_RS04975 0.50 +0.7
1,045,266 - -0.9
1,045,266 - -0.4
1,045,274 + -1.3
1,045,274 + +1.6
1,045,275 - -0.8
1,045,275 - -0.2
1,045,305 - -1.0
1,045,560 + HGI48_RS04980 0.49 -0.2
1,045,560 + HGI48_RS04980 0.49 -0.8
1,045,560 + HGI48_RS04980 0.49 +3.3
1,045,560 + +1.2
1,045,560 + HGI48_RS04980 0.49 +0.2
1,045,561 - HGI48_RS04980 0.50 -0.3
1,045,561 - HGI48_RS04980 0.50 -1.4
1,045,561 - HGI48_RS04980 0.50 +0.6
1,045,561 - HGI48_RS04980 0.50 -1.6
1,045,561 - HGI48_RS04980 0.50 +0.6
1,045,561 - HGI48_RS04980 0.50 +0.4
1,045,561 - HGI48_RS04980 0.50 -0.2
1,045,561 - HGI48_RS04980 0.50 +0.1
1,045,877 + -0.0
1,045,878 - +0.4
1,045,878 - +1.6
1,045,878 - -1.2
1,045,886 + -1.2
1,045,886 + +1.3
1,045,887 - -0.8
1,045,916 + HGI48_RS04985 0.15 -1.3
1,045,917 - HGI48_RS04985 0.15 -0.2
1,045,931 + HGI48_RS04985 0.18 +0.3
1,045,931 + HGI48_RS04985 0.18 -1.0
1,045,931 + -0.4
1,045,931 + HGI48_RS04985 0.18 -1.8
1,045,931 + HGI48_RS04985 0.18 +0.5
1,046,179 + HGI48_RS04985 0.74 -0.4
1,046,179 + HGI48_RS04985 0.74 -2.2
1,046,180 - HGI48_RS04985 0.74 -1.2
1,046,180 - HGI48_RS04985 0.74 -0.3
1,046,180 - HGI48_RS04985 0.74 +0.6
1,046,180 - HGI48_RS04985 0.74 -0.4
1,046,180 - HGI48_RS04985 0.74 -0.5
1,046,180 - HGI48_RS04985 0.74 +0.4
1,046,180 - HGI48_RS04985 0.74 +0.2
1,046,180 - HGI48_RS04985 0.74 +1.0
1,046,383 - HGI48_RS04990 0.30 -0.4
1,046,390 + +1.3
1,046,401 - HGI48_RS04990 0.35 +2.2
1,046,663 + -0.4
1,046,664 - +0.1
1,046,674 - +0.1
1,046,683 + +0.7
1,046,683 + +1.9
1,046,683 + -0.2
1,046,684 - -1.1
1,046,684 - -0.9
1,046,684 - -0.4
1,046,719 + -1.0
1,046,719 + +0.2
1,046,719 + -1.8
1,046,719 + -0.4
1,046,720 - -0.0
1,046,831 + +0.6
1,046,831 + +0.9
1,046,857 + -0.1

Or see this region's nucleotide sequence