Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04490 and HGI48_RS04495 are separated by 162 nucleotides HGI48_RS04495 and HGI48_RS04500 are separated by 370 nucleotides
HGI48_RS04490: HGI48_RS04490 - anaerobic nitric oxide reductase flavorubredoxin, at 939,848 to 941,383
_RS04490
HGI48_RS04495: HGI48_RS04495 - nitric oxide reductase transcriptional regulator NorR, at 941,546 to 943,072
_RS04495
HGI48_RS04500: HGI48_RS04500 - fumarate hydratase, at 943,443 to 945,086
_RS04500
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 940.611 kb on + strand, within HGI48_RS04490 at 940.611 kb on + strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.612 kb on - strand, within HGI48_RS04490 at 940.638 kb on + strand, within HGI48_RS04490 at 940.660 kb on - strand, within HGI48_RS04490 at 940.669 kb on + strand at 940.670 kb on - strand at 940.670 kb on - strand, within HGI48_RS04490 at 940.803 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.869 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.918 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand, within HGI48_RS04490 at 940.920 kb on + strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 940.921 kb on - strand, within HGI48_RS04490 at 941.082 kb on + strand, within HGI48_RS04490 at 941.163 kb on + strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.164 kb on - strand, within HGI48_RS04490 at 941.271 kb on + strand at 941.271 kb on + strand at 941.271 kb on + strand at 941.279 kb on - strand at 941.279 kb on - strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.280 kb on + strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.281 kb on - strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.327 kb on + strand at 941.359 kb on + strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.360 kb on - strand at 941.368 kb on + strand at 941.377 kb on + strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.378 kb on - strand at 941.404 kb on - strand at 941.404 kb on - strand at 941.406 kb on + strand at 941.413 kb on - strand at 941.413 kb on - strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.416 kb on + strand at 941.417 kb on - strand at 941.559 kb on + strand at 941.559 kb on + strand at 941.560 kb on - strand at 941.560 kb on - strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.652 kb on + strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.653 kb on - strand at 941.681 kb on + strand at 941.837 kb on + strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 941.838 kb on - strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.175 kb on + strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.176 kb on - strand, within HGI48_RS04495 at 942.269 kb on + strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.270 kb on - strand, within HGI48_RS04495 at 942.494 kb on - strand, within HGI48_RS04495 at 942.516 kb on + strand, within HGI48_RS04495 at 942.540 kb on + strand, within HGI48_RS04495 at 942.541 kb on - strand, within HGI48_RS04495 at 942.947 kb on + strand at 942.948 kb on - strand at 942.964 kb on + strand at 943.024 kb on - strand at 943.027 kb on + strand at 943.066 kb on - strand at 943.097 kb on + strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.098 kb on - strand at 943.117 kb on + strand at 943.118 kb on - strand at 943.118 kb on - strand at 943.372 kb on + strand at 943.396 kb on - strand at 943.401 kb on + strand at 943.401 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.418 kb on + strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.419 kb on - strand at 943.550 kb on + strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.551 kb on - strand at 943.662 kb on - strand, within HGI48_RS04500 at 943.662 kb on - strand, within HGI48_RS04500 at 943.747 kb on + strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.748 kb on - strand, within HGI48_RS04500 at 943.825 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.828 kb on + strand, within HGI48_RS04500 at 943.829 kb on - strand at 943.849 kb on + strand, within HGI48_RS04500 at 943.850 kb on - strand, within HGI48_RS04500 at 944.011 kb on - strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.053 kb on + strand at 944.053 kb on + strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500 at 944.054 kb on - strand, within HGI48_RS04500
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 940,611 + HGI48_RS04490 0.50 -0.6 940,611 + HGI48_RS04490 0.50 -0.1 940,612 - HGI48_RS04490 0.50 -0.3 940,612 - HGI48_RS04490 0.50 -0.6 940,638 + HGI48_RS04490 0.51 +0.4 940,660 - HGI48_RS04490 0.53 -0.2 940,669 + +1.6 940,670 - +0.6 940,670 - HGI48_RS04490 0.54 -0.1 940,803 + HGI48_RS04490 0.62 -0.2 940,869 + HGI48_RS04490 0.66 +0.8 940,869 + HGI48_RS04490 0.66 +0.4 940,918 + HGI48_RS04490 0.70 -0.1 940,918 + HGI48_RS04490 0.70 +0.2 940,918 + HGI48_RS04490 0.70 -0.5 940,918 + HGI48_RS04490 0.70 +0.1 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 +0.1 940,920 + HGI48_RS04490 0.70 -2.7 940,920 + HGI48_RS04490 0.70 -1.2 940,920 + HGI48_RS04490 0.70 -2.2 940,920 + HGI48_RS04490 0.70 -0.3 940,920 + HGI48_RS04490 0.70 -0.3 940,920 + HGI48_RS04490 0.70 -0.4 940,920 + HGI48_RS04490 0.70 -0.7 940,920 + HGI48_RS04490 0.70 +0.6 940,920 + HGI48_RS04490 0.70 -2.0 940,920 + -1.0 940,921 - HGI48_RS04490 0.70 +0.4 940,921 - HGI48_RS04490 0.70 -1.0 940,921 - HGI48_RS04490 0.70 -0.7 940,921 - +1.6 940,921 - HGI48_RS04490 0.70 -0.7 940,921 - HGI48_RS04490 0.70 -0.8 940,921 - HGI48_RS04490 0.70 -0.7 940,921 - HGI48_RS04490 0.70 +0.2 940,921 - HGI48_RS04490 0.70 -0.4 940,921 - HGI48_RS04490 0.70 +1.4 940,921 - HGI48_RS04490 0.70 +0.9 941,082 + HGI48_RS04490 0.80 +1.3 941,163 + HGI48_RS04490 0.86 -0.8 941,164 - HGI48_RS04490 0.86 -1.7 941,164 - HGI48_RS04490 0.86 +0.7 941,164 - HGI48_RS04490 0.86 -0.4 941,271 + +0.2 941,271 + +0.2 941,271 + -0.3 941,279 - -0.4 941,279 - +0.2 941,280 + -0.0 941,280 + +1.0 941,280 + +0.7 941,281 - -3.1 941,281 - -0.0 941,281 - -1.6 941,281 - -1.4 941,327 + +0.7 941,327 + -0.2 941,327 + -0.0 941,327 + +0.1 941,359 + -0.2 941,360 - +0.4 941,360 - -0.0 941,360 - -2.0 941,360 - +0.2 941,368 + -0.4 941,377 + +0.2 941,378 - -0.3 941,378 - -2.0 941,378 - +0.6 941,404 - +0.2 941,404 - +0.6 941,406 + -0.2 941,413 - -0.1 941,413 - -1.0 941,416 + -0.2 941,416 + +0.8 941,416 + -1.4 941,416 + -0.4 941,416 + -0.2 941,417 - -1.7 941,559 + -0.4 941,559 + +0.0 941,560 - -0.3 941,560 - +0.4 941,652 + -2.4 941,652 + -2.7 941,652 + -1.8 941,652 + -1.4 941,653 - -1.3 941,653 - -1.4 941,653 - -0.2 941,681 + -1.2 941,837 + HGI48_RS04495 0.19 -0.3 941,838 - HGI48_RS04495 0.19 -0.2 941,838 - HGI48_RS04495 0.19 -1.2 942,175 + HGI48_RS04495 0.41 -2.0 942,175 + HGI48_RS04495 0.41 +1.1 942,176 - HGI48_RS04495 0.41 -1.7 942,176 - HGI48_RS04495 0.41 -1.2 942,176 - HGI48_RS04495 0.41 -1.5 942,176 - HGI48_RS04495 0.41 +1.6 942,269 + HGI48_RS04495 0.47 -1.7 942,270 - HGI48_RS04495 0.47 -0.5 942,270 - HGI48_RS04495 0.47 -2.0 942,270 - HGI48_RS04495 0.47 -2.2 942,494 - HGI48_RS04495 0.62 -0.0 942,516 + HGI48_RS04495 0.64 -1.4 942,540 + HGI48_RS04495 0.65 -0.2 942,541 - HGI48_RS04495 0.65 -0.3 942,947 + +0.6 942,948 - -0.1 942,964 + -1.0 943,024 - -0.0 943,027 + -1.0 943,066 - -0.4 943,097 + -0.6 943,098 - -0.4 943,098 - +0.6 943,098 - -1.0 943,117 + +0.8 943,118 - -2.2 943,118 - -1.4 943,372 + -1.0 943,396 - +1.6 943,401 + -0.4 943,401 + +0.3 943,418 + +0.6 943,418 + -0.4 943,418 + -1.7 943,418 + -0.1 943,419 - -0.8 943,419 - +0.4 943,419 - +2.8 943,419 - -0.8 943,419 - -0.6 943,550 + -2.2 943,551 - +0.3 943,551 - -0.5 943,551 - -0.4 943,551 - -0.9 943,551 - +0.8 943,662 - HGI48_RS04500 0.13 -0.7 943,662 - HGI48_RS04500 0.13 -1.0 943,747 + HGI48_RS04500 0.18 -1.4 943,748 - HGI48_RS04500 0.19 +0.6 943,748 - HGI48_RS04500 0.19 -1.4 943,748 - HGI48_RS04500 0.19 -0.4 943,825 + HGI48_RS04500 0.23 -1.0 943,828 + HGI48_RS04500 0.23 -0.4 943,828 + HGI48_RS04500 0.23 -0.4 943,829 - +0.6 943,849 + HGI48_RS04500 0.25 -0.2 943,850 - HGI48_RS04500 0.25 -0.4 944,011 - HGI48_RS04500 0.35 -0.4 944,053 + -0.4 944,053 + HGI48_RS04500 0.37 -0.3 944,053 + -0.0 944,053 + HGI48_RS04500 0.37 -0.4 944,054 - HGI48_RS04500 0.37 -0.2 944,054 - HGI48_RS04500 0.37 -0.3 944,054 - HGI48_RS04500 0.37 -0.1
Or see this region's nucleotide sequence