Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04430 and HGI48_RS04435 are separated by 295 nucleotides HGI48_RS04435 and HGI48_RS04440 are separated by 41 nucleotides
HGI48_RS04430: HGI48_RS04430 - helix-turn-helix transcriptional regulator, at 927,838 to 928,401
_RS04430
HGI48_RS04435: HGI48_RS04435 - PTS glucose transporter subunit IIA, at 928,697 to 929,206
_RS04435
HGI48_RS04440: HGI48_RS04440 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 929,248 to 930,975
_RS04440
Position (kb) 928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 927.722 kb on + strand at 927.722 kb on + strand at 927.722 kb on + strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.723 kb on - strand at 927.790 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.793 kb on + strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.794 kb on - strand at 927.831 kb on - strand at 928.075 kb on + strand, within HGI48_RS04430 at 928.075 kb on + strand, within HGI48_RS04430 at 928.076 kb on - strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand, within HGI48_RS04430 at 928.079 kb on + strand at 928.079 kb on + strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.080 kb on - strand, within HGI48_RS04430 at 928.118 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.145 kb on + strand, within HGI48_RS04430 at 928.146 kb on - strand, within HGI48_RS04430 at 928.146 kb on - strand at 928.146 kb on - strand at 928.146 kb on - strand, within HGI48_RS04430 at 928.151 kb on + strand at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.260 kb on + strand, within HGI48_RS04430 at 928.261 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.419 kb on + strand at 928.420 kb on - strand at 928.422 kb on + strand at 928.422 kb on + strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.423 kb on - strand at 928.430 kb on + strand at 928.476 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.480 kb on + strand at 928.481 kb on - strand at 928.481 kb on - strand at 928.533 kb on + strand at 928.533 kb on + strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.534 kb on - strand at 928.557 kb on + strand at 928.618 kb on - strand at 928.618 kb on - strand at 928.635 kb on - strand at 928.698 kb on + strand at 928.777 kb on + strand, within HGI48_RS04435 at 928.778 kb on - strand, within HGI48_RS04435 at 929.042 kb on - strand, within HGI48_RS04435 at 929.084 kb on + strand at 929.085 kb on - strand, within HGI48_RS04435 at 929.218 kb on - strand at 929.224 kb on + strand at 929.225 kb on - strand at 929.228 kb on - strand at 929.268 kb on + strand at 929.293 kb on + strand at 929.293 kb on + strand at 929.294 kb on - strand at 929.318 kb on - strand at 929.351 kb on + strand at 929.351 kb on + strand at 929.352 kb on - strand at 929.437 kb on + strand, within HGI48_RS04440 at 929.438 kb on - strand, within HGI48_RS04440 at 929.442 kb on + strand, within HGI48_RS04440 at 929.443 kb on - strand, within HGI48_RS04440 at 929.443 kb on - strand at 929.443 kb on - strand, within HGI48_RS04440 at 929.555 kb on + strand, within HGI48_RS04440 at 929.588 kb on - strand, within HGI48_RS04440 at 929.588 kb on - strand, within HGI48_RS04440 at 929.598 kb on + strand, within HGI48_RS04440 at 929.598 kb on + strand, within HGI48_RS04440 at 929.598 kb on + strand at 929.598 kb on + strand, within HGI48_RS04440 at 929.608 kb on + strand, within HGI48_RS04440 at 929.608 kb on + strand, within HGI48_RS04440 at 929.892 kb on + strand, within HGI48_RS04440 at 929.945 kb on + strand, within HGI48_RS04440 at 930.026 kb on + strand, within HGI48_RS04440 at 930.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 927,722 + -1.2 927,722 + -0.3 927,722 + +1.1 927,723 - +0.3 927,723 - -0.7 927,723 - -1.2 927,790 + -1.4 927,793 + -2.6 927,793 + -1.4 927,793 + -0.4 927,793 + +0.4 927,793 + -0.6 927,793 + -1.2 927,793 + +0.2 927,793 + +0.6 927,793 + -1.4 927,794 - -1.2 927,794 - +0.2 927,794 - -0.7 927,794 - -1.6 927,794 - +0.3 927,794 - -0.4 927,794 - -1.0 927,831 - -0.5 928,075 + HGI48_RS04430 0.42 +1.0 928,075 + HGI48_RS04430 0.42 -1.4 928,076 - HGI48_RS04430 0.42 -0.7 928,079 + HGI48_RS04430 0.43 -0.6 928,079 + HGI48_RS04430 0.43 -0.4 928,079 + -1.0 928,079 + HGI48_RS04430 0.43 +0.8 928,079 + HGI48_RS04430 0.43 -0.1 928,079 + HGI48_RS04430 0.43 -0.7 928,079 + HGI48_RS04430 0.43 +0.1 928,079 + HGI48_RS04430 0.43 -0.3 928,079 + HGI48_RS04430 0.43 -1.3 928,079 + HGI48_RS04430 0.43 +1.3 928,079 + HGI48_RS04430 0.43 +0.8 928,079 + HGI48_RS04430 0.43 -0.1 928,079 + HGI48_RS04430 0.43 -0.7 928,079 + +0.0 928,079 + HGI48_RS04430 0.43 +0.9 928,080 - HGI48_RS04430 0.43 -0.3 928,080 - HGI48_RS04430 0.43 +0.7 928,080 - -1.0 928,080 - HGI48_RS04430 0.43 -0.7 928,080 - HGI48_RS04430 0.43 +0.6 928,080 - HGI48_RS04430 0.43 -0.5 928,080 - HGI48_RS04430 0.43 -0.2 928,080 - HGI48_RS04430 0.43 -0.7 928,080 - HGI48_RS04430 0.43 -1.2 928,118 + HGI48_RS04430 0.50 -0.7 928,145 + HGI48_RS04430 0.54 -0.7 928,145 + HGI48_RS04430 0.54 -0.1 928,145 + HGI48_RS04430 0.54 -1.2 928,146 - HGI48_RS04430 0.55 +0.1 928,146 - +0.6 928,146 - +0.0 928,146 - HGI48_RS04430 0.55 +0.3 928,151 + +0.0 928,260 + HGI48_RS04430 0.75 +0.6 928,260 + HGI48_RS04430 0.75 -0.5 928,260 + HGI48_RS04430 0.75 -0.5 928,261 - +1.9 928,392 + +0.6 928,392 + +0.0 928,392 + +1.7 928,392 + +1.0 928,419 + -0.3 928,419 + +0.6 928,419 + -0.2 928,420 - -0.2 928,422 + -0.6 928,422 + -0.3 928,423 - -0.4 928,423 - -1.7 928,423 - -0.9 928,423 - -1.2 928,430 + -0.2 928,476 + -0.2 928,480 + +0.9 928,480 + +1.0 928,480 + +0.6 928,480 + +0.1 928,480 + -1.0 928,480 + -2.0 928,481 - -1.9 928,481 - +1.6 928,533 + -0.7 928,533 + -1.3 928,534 - -1.7 928,534 - -1.7 928,534 - -1.7 928,557 + -0.8 928,618 - -2.0 928,618 - -0.5 928,635 - -2.0 928,698 + -0.2 928,777 + HGI48_RS04435 0.16 -1.4 928,778 - HGI48_RS04435 0.16 -3.1 929,042 - HGI48_RS04435 0.68 -2.7 929,084 + +0.0 929,085 - HGI48_RS04435 0.76 -2.4 929,218 - +0.0 929,224 + -2.1 929,225 - -0.3 929,228 - -0.5 929,268 + -2.0 929,293 + -1.5 929,293 + -1.4 929,294 - -2.2 929,318 - -1.2 929,351 + +0.0 929,351 + -1.2 929,352 - -0.4 929,437 + HGI48_RS04440 0.11 -1.7 929,438 - HGI48_RS04440 0.11 -1.7 929,442 + HGI48_RS04440 0.11 +0.5 929,443 - HGI48_RS04440 0.11 -0.3 929,443 - +0.0 929,443 - HGI48_RS04440 0.11 -1.4 929,555 + HGI48_RS04440 0.18 -1.2 929,588 - HGI48_RS04440 0.20 -1.7 929,588 - HGI48_RS04440 0.20 -2.4 929,598 + HGI48_RS04440 0.20 +0.4 929,598 + HGI48_RS04440 0.20 +0.2 929,598 + -0.0 929,598 + HGI48_RS04440 0.20 -1.7 929,608 + HGI48_RS04440 0.21 -0.2 929,608 + HGI48_RS04440 0.21 -0.4 929,892 + HGI48_RS04440 0.37 +1.0 929,945 + HGI48_RS04440 0.40 -0.2 930,026 + HGI48_RS04440 0.45 -1.9 930,027 - -1.0
Or see this region's nucleotide sequence