Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04255 and HGI48_RS04260 overlap by 4 nucleotides HGI48_RS04260 and HGI48_RS04265 overlap by 11 nucleotides HGI48_RS04265 and HGI48_RS04270 overlap by 8 nucleotides HGI48_RS04270 and HGI48_RS04275 overlap by 4 nucleotides HGI48_RS04275 and HGI48_RS04280 are separated by 1 nucleotides HGI48_RS04280 and HGI48_RS04285 are separated by 202 nucleotides
HGI48_RS04255: HGI48_RS04255 - hypothetical protein, at 896,176 to 896,361
_RS04255
HGI48_RS04260: HGI48_RS04260 - hypothetical protein, at 896,358 to 896,693
_RS04260
HGI48_RS04265: HGI48_RS04265 - hypothetical protein, at 896,683 to 897,033
_RS04265
HGI48_RS04270: HGI48_RS04270 - hypothetical protein, at 897,026 to 897,436
_RS04270
HGI48_RS04275: HGI48_RS04275 - hypothetical protein, at 897,433 to 897,669
_RS04275
HGI48_RS04280: HGI48_RS04280 - hypothetical protein, at 897,671 to 898,135
_RS04280
HGI48_RS04285: HGI48_RS04285 - hypothetical protein, at 898,338 to 900,083
_RS04285
Position (kb) 897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 896.050 kb on + strand at 896.267 kb on + strand, within HGI48_RS04255 at 896.271 kb on + strand, within HGI48_RS04255 at 896.323 kb on - strand, within HGI48_RS04255 at 896.389 kb on - strand at 896.523 kb on - strand, within HGI48_RS04260 at 896.889 kb on - strand, within HGI48_RS04265 at 897.037 kb on - strand at 897.103 kb on + strand, within HGI48_RS04270 at 897.104 kb on - strand, within HGI48_RS04270 at 897.104 kb on - strand, within HGI48_RS04270 at 897.244 kb on + strand, within HGI48_RS04270 at 897.360 kb on + strand at 897.648 kb on + strand at 897.751 kb on - strand, within HGI48_RS04280 at 897.872 kb on - strand, within HGI48_RS04280 at 898.149 kb on + strand at 898.183 kb on + strand at 898.214 kb on + strand at 898.249 kb on + strand at 898.270 kb on - strand at 898.291 kb on - strand at 898.304 kb on + strand at 898.311 kb on - strand at 898.341 kb on + strand at 898.419 kb on + strand at 898.420 kb on - strand at 898.426 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 896,050 + +1.2 896,267 + HGI48_RS04255 0.49 +0.3 896,271 + HGI48_RS04255 0.51 +0.7 896,323 - HGI48_RS04255 0.79 -0.4 896,389 - +1.8 896,523 - HGI48_RS04260 0.49 -3.1 896,889 - HGI48_RS04265 0.59 +0.6 897,037 - -0.4 897,103 + HGI48_RS04270 0.19 -1.4 897,104 - HGI48_RS04270 0.19 +0.5 897,104 - HGI48_RS04270 0.19 +0.7 897,244 + HGI48_RS04270 0.53 -0.1 897,360 + +0.0 897,648 + +0.2 897,751 - HGI48_RS04280 0.17 -1.4 897,872 - HGI48_RS04280 0.43 +4.3 898,149 + -0.2 898,183 + +1.0 898,214 + -1.5 898,249 + -0.1 898,270 - -0.9 898,291 - +0.0 898,304 + -0.7 898,311 - -0.6 898,341 + -0.7 898,419 + +0.3 898,420 - +0.3 898,426 - +0.2
Or see this region's nucleotide sequence