Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04155 and HGI48_RS04160 are separated by 189 nucleotides HGI48_RS04160 and HGI48_RS04165 are separated by 511 nucleotides HGI48_RS04165 and HGI48_RS04170 overlap by 4 nucleotides
HGI48_RS04155: HGI48_RS04155 - TetR family transcriptional regulator, at 878,878 to 879,441
_RS04155
HGI48_RS04160: HGI48_RS04160 - transposase, at 879,631 to 879,894
_RS04160
HGI48_RS04165: HGI48_RS04165 - lipocalin-like domain-containing protein, at 880,406 to 880,882
_RS04165
HGI48_RS04170: HGI48_RS04170 - cupin domain-containing protein, at 880,879 to 881,415
_RS04170
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 878.638 kb on + strand at 878.691 kb on - strand at 878.691 kb on - strand at 878.700 kb on + strand at 878.701 kb on - strand at 878.706 kb on - strand at 878.706 kb on - strand at 878.706 kb on - strand at 878.739 kb on + strand at 878.739 kb on + strand at 878.825 kb on + strand at 878.825 kb on + strand at 878.852 kb on + strand at 878.906 kb on + strand at 878.941 kb on + strand, within HGI48_RS04155 at 878.957 kb on - strand, within HGI48_RS04155 at 879.115 kb on - strand, within HGI48_RS04155 at 879.151 kb on - strand, within HGI48_RS04155 at 879.163 kb on - strand, within HGI48_RS04155 at 879.173 kb on + strand, within HGI48_RS04155 at 879.174 kb on - strand, within HGI48_RS04155 at 879.213 kb on + strand, within HGI48_RS04155 at 879.384 kb on - strand, within HGI48_RS04155 at 879.412 kb on - strand at 879.412 kb on - strand at 879.415 kb on - strand at 879.602 kb on + strand at 879.603 kb on - strand at 879.603 kb on - strand at 879.746 kb on - strand, within HGI48_RS04160 at 879.746 kb on - strand, within HGI48_RS04160 at 879.858 kb on + strand, within HGI48_RS04160 at 879.931 kb on + strand at 879.931 kb on + strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.932 kb on - strand at 879.958 kb on + strand at 879.958 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.963 kb on + strand at 879.964 kb on - strand at 879.964 kb on - strand at 879.994 kb on + strand at 879.994 kb on + strand at 879.994 kb on + strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 879.995 kb on - strand at 880.033 kb on + strand at 880.033 kb on + strand at 880.033 kb on + strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.034 kb on - strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.159 kb on + strand at 880.160 kb on - strand at 880.160 kb on - strand at 880.160 kb on - strand at 880.161 kb on + strand at 880.161 kb on + strand at 880.237 kb on + strand at 880.237 kb on + strand at 880.237 kb on + strand at 880.238 kb on - strand at 880.238 kb on - strand at 880.314 kb on + strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.315 kb on - strand at 880.373 kb on - strand at 880.376 kb on + strand at 880.377 kb on - strand at 880.414 kb on + strand at 880.528 kb on + strand, within HGI48_RS04165 at 880.528 kb on + strand, within HGI48_RS04165 at 880.528 kb on + strand, within HGI48_RS04165 at 880.528 kb on + strand, within HGI48_RS04165 at 880.529 kb on - strand at 880.529 kb on - strand, within HGI48_RS04165 at 880.529 kb on - strand, within HGI48_RS04165 at 880.529 kb on - strand, within HGI48_RS04165 at 880.529 kb on - strand at 880.532 kb on + strand, within HGI48_RS04165 at 880.533 kb on - strand at 880.533 kb on - strand, within HGI48_RS04165 at 880.533 kb on - strand, within HGI48_RS04165 at 880.533 kb on - strand, within HGI48_RS04165 at 880.549 kb on + strand, within HGI48_RS04165 at 880.550 kb on - strand, within HGI48_RS04165 at 880.550 kb on - strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.602 kb on + strand, within HGI48_RS04165 at 880.603 kb on - strand, within HGI48_RS04165 at 880.645 kb on + strand at 880.645 kb on + strand, within HGI48_RS04165 at 880.646 kb on - strand, within HGI48_RS04165 at 880.646 kb on - strand, within HGI48_RS04165 at 880.646 kb on - strand, within HGI48_RS04165 at 880.655 kb on + strand, within HGI48_RS04165 at 880.712 kb on + strand, within HGI48_RS04165 at 880.713 kb on - strand, within HGI48_RS04165 at 880.713 kb on - strand, within HGI48_RS04165 at 880.761 kb on + strand at 880.762 kb on - strand, within HGI48_RS04165 at 880.762 kb on - strand, within HGI48_RS04165 at 880.785 kb on + strand, within HGI48_RS04165 at 880.786 kb on - strand at 880.786 kb on - strand, within HGI48_RS04165 at 880.786 kb on - strand, within HGI48_RS04165 at 880.786 kb on - strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.789 kb on + strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.790 kb on - strand, within HGI48_RS04165 at 880.798 kb on + strand, within HGI48_RS04165 at 880.829 kb on + strand, within HGI48_RS04165 at 880.830 kb on - strand, within HGI48_RS04165 at 880.830 kb on - strand, within HGI48_RS04165 at 880.830 kb on - strand, within HGI48_RS04165
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 878,638 + +1.2 878,691 - +0.2 878,691 - +1.0 878,700 + -0.8 878,701 - -0.0 878,706 - -0.1 878,706 - -1.1 878,706 - -0.6 878,739 + -0.4 878,739 + -0.5 878,825 + +0.5 878,825 + +0.9 878,852 + +0.9 878,906 + +0.6 878,941 + HGI48_RS04155 0.11 -2.2 878,957 - HGI48_RS04155 0.14 -2.0 879,115 - HGI48_RS04155 0.42 +0.1 879,151 - HGI48_RS04155 0.48 +0.6 879,163 - HGI48_RS04155 0.51 +0.2 879,173 + HGI48_RS04155 0.52 +0.1 879,174 - HGI48_RS04155 0.52 -1.1 879,213 + HGI48_RS04155 0.59 +0.0 879,384 - HGI48_RS04155 0.90 -1.7 879,412 - -2.7 879,412 - +1.3 879,415 - -0.3 879,602 + +0.3 879,603 - -1.7 879,603 - +0.8 879,746 - HGI48_RS04160 0.44 -0.4 879,746 - HGI48_RS04160 0.44 -0.2 879,858 + HGI48_RS04160 0.86 -0.1 879,931 + +1.0 879,931 + +0.8 879,932 - -0.3 879,932 - +0.5 879,932 - +0.6 879,958 + +0.6 879,958 + +0.3 879,963 + -1.7 879,963 + -0.1 879,963 + +0.1 879,963 + -1.7 879,963 + -1.0 879,964 - -1.0 879,964 - -0.5 879,994 + -0.5 879,994 + -0.4 879,994 + -0.4 879,995 - +0.6 879,995 - +0.0 879,995 - +0.6 879,995 - +0.6 879,995 - -1.0 879,995 - +0.2 880,033 + -0.5 880,033 + -1.0 880,033 + -0.1 880,034 - +0.1 880,034 - +0.4 880,034 - +1.9 880,034 - +1.0 880,034 - -2.2 880,159 + +0.2 880,159 + -1.4 880,159 + -0.7 880,159 + -0.8 880,159 + +0.7 880,159 + -1.9 880,160 - +0.2 880,160 - +1.9 880,160 - +0.3 880,161 + -0.1 880,161 + -1.2 880,237 + +1.4 880,237 + -0.1 880,237 + -0.4 880,238 - +0.6 880,238 - -0.8 880,314 + -0.2 880,315 - +0.6 880,315 - -0.0 880,315 - +0.0 880,315 - +0.2 880,315 - -0.4 880,315 - +0.1 880,373 - +0.3 880,376 + +1.2 880,377 - -0.2 880,414 + +0.1 880,528 + HGI48_RS04165 0.26 -1.4 880,528 + HGI48_RS04165 0.26 +0.6 880,528 + HGI48_RS04165 0.26 -0.5 880,528 + HGI48_RS04165 0.26 -0.4 880,529 - +2.2 880,529 - HGI48_RS04165 0.26 -1.0 880,529 - HGI48_RS04165 0.26 -2.0 880,529 - HGI48_RS04165 0.26 -0.3 880,529 - +1.0 880,532 + HGI48_RS04165 0.26 +1.0 880,533 - +0.0 880,533 - HGI48_RS04165 0.27 -2.6 880,533 - HGI48_RS04165 0.27 +0.4 880,533 - HGI48_RS04165 0.27 -2.1 880,549 + HGI48_RS04165 0.30 -1.4 880,550 - HGI48_RS04165 0.30 +0.1 880,550 - HGI48_RS04165 0.30 -0.2 880,602 + HGI48_RS04165 0.41 -1.9 880,602 + HGI48_RS04165 0.41 -0.4 880,602 + HGI48_RS04165 0.41 +1.6 880,602 + HGI48_RS04165 0.41 +0.2 880,603 - HGI48_RS04165 0.41 +0.4 880,645 + +1.6 880,645 + HGI48_RS04165 0.50 -0.7 880,646 - HGI48_RS04165 0.50 +0.3 880,646 - HGI48_RS04165 0.50 -0.1 880,646 - HGI48_RS04165 0.50 -1.4 880,655 + HGI48_RS04165 0.52 +0.1 880,712 + HGI48_RS04165 0.64 -0.4 880,713 - HGI48_RS04165 0.64 -1.4 880,713 - HGI48_RS04165 0.64 +1.6 880,761 + +1.0 880,762 - HGI48_RS04165 0.75 +0.3 880,762 - HGI48_RS04165 0.75 -1.0 880,785 + HGI48_RS04165 0.79 +0.4 880,786 - -1.0 880,786 - HGI48_RS04165 0.80 -0.4 880,786 - HGI48_RS04165 0.80 -0.2 880,786 - HGI48_RS04165 0.80 -0.1 880,789 + HGI48_RS04165 0.80 -1.7 880,789 + HGI48_RS04165 0.80 -1.0 880,789 + HGI48_RS04165 0.80 -0.1 880,789 + HGI48_RS04165 0.80 +0.6 880,789 + HGI48_RS04165 0.80 -1.7 880,789 + HGI48_RS04165 0.80 +0.4 880,790 - HGI48_RS04165 0.81 +0.6 880,790 - HGI48_RS04165 0.81 -0.8 880,790 - HGI48_RS04165 0.81 -1.6 880,790 - HGI48_RS04165 0.81 +0.6 880,790 - HGI48_RS04165 0.81 +0.9 880,790 - HGI48_RS04165 0.81 +0.4 880,790 - HGI48_RS04165 0.81 -0.2 880,790 - HGI48_RS04165 0.81 +0.1 880,798 + HGI48_RS04165 0.82 -1.3 880,829 + HGI48_RS04165 0.89 +0.7 880,830 - HGI48_RS04165 0.89 +0.6 880,830 - HGI48_RS04165 0.89 -0.3 880,830 - HGI48_RS04165 0.89 -0.1
Or see this region's nucleotide sequence