Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03770

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03765 and HGI48_RS03770 are separated by 26 nucleotidesHGI48_RS03770 and HGI48_RS03775 are separated by 23 nucleotides HGI48_RS03765: HGI48_RS03765 - 5-dehydro-2-deoxygluconokinase, at 802,312 to 804,297 _RS03765 HGI48_RS03770: HGI48_RS03770 - myo-inosose-2 dehydratase, at 804,324 to 805,214 _RS03770 HGI48_RS03775: HGI48_RS03775 - 5-deoxy-glucuronate isomerase, at 805,238 to 806,065 _RS03775 Position (kb) 804 805 806Strain fitness (log2 ratio) -2 -1 0 1 2 3at 803.567 kb on + strandat 803.609 kb on + strand, within HGI48_RS03765at 803.630 kb on + strand, within HGI48_RS03765at 803.630 kb on + strand, within HGI48_RS03765at 803.631 kb on - strand, within HGI48_RS03765at 803.631 kb on - strandat 803.631 kb on - strand, within HGI48_RS03765at 803.631 kb on - strand, within HGI48_RS03765at 803.633 kb on + strand, within HGI48_RS03765at 803.634 kb on - strandat 803.668 kb on - strand, within HGI48_RS03765at 803.668 kb on - strand, within HGI48_RS03765at 803.971 kb on + strand, within HGI48_RS03765at 803.972 kb on - strand, within HGI48_RS03765at 803.972 kb on - strand, within HGI48_RS03765at 803.972 kb on - strand, within HGI48_RS03765at 804.116 kb on + strandat 804.116 kb on + strandat 804.117 kb on - strandat 804.117 kb on - strandat 804.117 kb on - strandat 804.117 kb on - strandat 804.117 kb on - strandat 804.117 kb on - strandat 804.117 kb on - strandat 804.255 kb on + strandat 804.255 kb on + strandat 804.255 kb on + strandat 804.255 kb on + strandat 804.256 kb on - strandat 804.256 kb on - strandat 804.259 kb on + strandat 804.259 kb on + strandat 804.259 kb on + strandat 804.259 kb on + strandat 804.260 kb on - strandat 804.260 kb on - strandat 804.260 kb on - strandat 804.260 kb on - strandat 804.260 kb on - strandat 804.305 kb on + strandat 804.306 kb on - strandat 804.306 kb on - strandat 804.344 kb on + strandat 804.345 kb on - strandat 804.345 kb on - strandat 804.345 kb on - strandat 804.345 kb on - strandat 804.532 kb on - strand, within HGI48_RS03770at 804.718 kb on - strand, within HGI48_RS03770at 804.726 kb on - strand, within HGI48_RS03770at 804.750 kb on - strandat 804.788 kb on + strand, within HGI48_RS03770at 804.950 kb on + strand, within HGI48_RS03770at 804.950 kb on + strandat 804.950 kb on + strandat 804.950 kb on + strand, within HGI48_RS03770at 805.060 kb on - strand, within HGI48_RS03770at 805.155 kb on + strandat 805.155 kb on + strandat 805.156 kb on - strandat 805.218 kb on + strandat 805.248 kb on + strandat 805.248 kb on + strandat 805.248 kb on + strandat 805.248 kb on + strandat 805.249 kb on - strandat 805.249 kb on - strandat 805.340 kb on + strand, within HGI48_RS03775at 805.340 kb on + strand, within HGI48_RS03775at 805.340 kb on + strand, within HGI48_RS03775at 805.453 kb on + strand, within HGI48_RS03775at 805.465 kb on + strand, within HGI48_RS03775at 805.465 kb on + strand, within HGI48_RS03775at 805.465 kb on + strand, within HGI48_RS03775at 805.465 kb on + strand, within HGI48_RS03775at 805.466 kb on - strand, within HGI48_RS03775at 805.466 kb on - strand, within HGI48_RS03775at 805.466 kb on - strandat 805.502 kb on + strand, within HGI48_RS03775at 805.502 kb on + strand, within HGI48_RS03775at 805.646 kb on - strand, within HGI48_RS03775at 805.663 kb on + strand, within HGI48_RS03775at 805.664 kb on - strand, within HGI48_RS03775at 805.664 kb on - strand, within HGI48_RS03775at 805.715 kb on + strand, within HGI48_RS03775at 805.715 kb on + strand, within HGI48_RS03775at 805.716 kb on - strand, within HGI48_RS03775at 805.716 kb on - strand, within HGI48_RS03775at 805.716 kb on - strand, within HGI48_RS03775at 805.732 kb on + strand, within HGI48_RS03775at 805.732 kb on + strandat 805.802 kb on + strand, within HGI48_RS03775at 805.802 kb on + strand, within HGI48_RS03775at 805.803 kb on - strand, within HGI48_RS03775at 805.803 kb on - strand, within HGI48_RS03775at 805.803 kb on - strand, within HGI48_RS03775at 805.803 kb on - strand, within HGI48_RS03775at 805.805 kb on + strand, within HGI48_RS03775at 805.805 kb on + strand, within HGI48_RS03775at 805.806 kb on - strand, within HGI48_RS03775at 805.806 kb on - strand, within HGI48_RS03775at 805.850 kb on + strandat 805.851 kb on - strand, within HGI48_RS03775at 805.889 kb on + strand, within HGI48_RS03775at 805.889 kb on + strand, within HGI48_RS03775at 805.890 kb on - strand, within HGI48_RS03775at 805.950 kb on - strand, within HGI48_RS03775at 805.958 kb on + strand, within HGI48_RS03775at 805.958 kb on + strand, within HGI48_RS03775at 805.958 kb on + strand, within HGI48_RS03775at 805.958 kb on + strand, within HGI48_RS03775at 805.959 kb on - strand, within HGI48_RS03775at 805.959 kb on - strand, within HGI48_RS03775at 805.959 kb on - strand, within HGI48_RS03775at 805.959 kb on - strand, within HGI48_RS03775at 805.961 kb on + strand, within HGI48_RS03775at 805.961 kb on + strand, within HGI48_RS03775at 805.961 kb on + strand, within HGI48_RS03775at 805.961 kb on + strand, within HGI48_RS03775at 805.961 kb on + strand, within HGI48_RS03775at 805.962 kb on - strand, within HGI48_RS03775at 805.962 kb on - strandat 805.962 kb on - strandat 805.962 kb on - strand, within HGI48_RS03775at 805.962 kb on - strand, within HGI48_RS03775at 805.966 kb on + strand, within HGI48_RS03775at 806.002 kb on + strandat 806.112 kb on + strandat 806.113 kb on - strandat 806.113 kb on - strandat 806.113 kb on - strandat 806.113 kb on - strandat 806.113 kb on - strandat 806.145 kb on + strandat 806.145 kb on + strandat 806.145 kb on + strandat 806.146 kb on - strandat 806.172 kb on + strandat 806.172 kb on + strandat 806.172 kb on + strandat 806.173 kb on - strandat 806.173 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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803,567 + +2.0
803,609 + HGI48_RS03765 0.65 -0.4
803,630 + HGI48_RS03765 0.66 -0.7
803,630 + HGI48_RS03765 0.66 +0.3
803,631 - HGI48_RS03765 0.66 +0.6
803,631 - +1.4
803,631 - HGI48_RS03765 0.66 +0.6
803,631 - HGI48_RS03765 0.66 -0.1
803,633 + HGI48_RS03765 0.67 -0.8
803,634 - -0.9
803,668 - HGI48_RS03765 0.68 -1.7
803,668 - HGI48_RS03765 0.68 +0.6
803,971 + HGI48_RS03765 0.84 +1.6
803,972 - HGI48_RS03765 0.84 -0.6
803,972 - HGI48_RS03765 0.84 +0.2
803,972 - HGI48_RS03765 0.84 +0.1
804,116 + -0.0
804,116 + +0.7
804,117 - -0.8
804,117 - -0.7
804,117 - -0.9
804,117 - +2.0
804,117 - -0.1
804,117 - -0.7
804,117 - -1.7
804,255 + +1.2
804,255 + +0.3
804,255 + -1.3
804,255 + -0.2
804,256 - +0.2
804,256 - +1.3
804,259 + -0.9
804,259 + +0.7
804,259 + -0.9
804,259 + +1.7
804,260 - +0.1
804,260 - -0.3
804,260 - +0.4
804,260 - +0.1
804,260 - -0.6
804,305 + +0.0
804,306 - +0.1
804,306 - -0.9
804,344 + +1.4
804,345 - +0.3
804,345 - -0.9
804,345 - -0.2
804,345 - +0.7
804,532 - HGI48_RS03770 0.23 -0.5
804,718 - HGI48_RS03770 0.44 -1.7
804,726 - HGI48_RS03770 0.45 -1.9
804,750 - +0.1
804,788 + HGI48_RS03770 0.52 +0.1
804,950 + HGI48_RS03770 0.70 -1.2
804,950 + +0.1
804,950 + +2.1
804,950 + HGI48_RS03770 0.70 -0.7
805,060 - HGI48_RS03770 0.83 -0.9
805,155 + +0.7
805,155 + -0.1
805,156 - -1.7
805,218 + +1.0
805,248 + -1.7
805,248 + -0.7
805,248 + -0.4
805,248 + -0.8
805,249 - -0.1
805,249 - -0.9
805,340 + HGI48_RS03775 0.12 +1.4
805,340 + HGI48_RS03775 0.12 -1.7
805,340 + HGI48_RS03775 0.12 -0.2
805,453 + HGI48_RS03775 0.26 -0.6
805,465 + HGI48_RS03775 0.27 -0.2
805,465 + HGI48_RS03775 0.27 -0.7
805,465 + HGI48_RS03775 0.27 -2.7
805,465 + HGI48_RS03775 0.27 +0.1
805,466 - HGI48_RS03775 0.28 +0.4
805,466 - HGI48_RS03775 0.28 +0.2
805,466 - -0.9
805,502 + HGI48_RS03775 0.32 -0.2
805,502 + HGI48_RS03775 0.32 +0.5
805,646 - HGI48_RS03775 0.49 +0.1
805,663 + HGI48_RS03775 0.51 -1.7
805,664 - HGI48_RS03775 0.51 +0.2
805,664 - HGI48_RS03775 0.51 +0.8
805,715 + HGI48_RS03775 0.58 -1.9
805,715 + HGI48_RS03775 0.58 +0.1
805,716 - HGI48_RS03775 0.58 -0.0
805,716 - HGI48_RS03775 0.58 -0.9
805,716 - HGI48_RS03775 0.58 +1.0
805,732 + HGI48_RS03775 0.60 -0.1
805,732 + +1.7
805,802 + HGI48_RS03775 0.68 -0.7
805,802 + HGI48_RS03775 0.68 -0.1
805,803 - HGI48_RS03775 0.68 -0.7
805,803 - HGI48_RS03775 0.68 -0.9
805,803 - HGI48_RS03775 0.68 +0.4
805,803 - HGI48_RS03775 0.68 -1.0
805,805 + HGI48_RS03775 0.68 -0.0
805,805 + HGI48_RS03775 0.68 -0.3
805,806 - HGI48_RS03775 0.69 +0.7
805,806 - HGI48_RS03775 0.69 +0.0
805,850 + +0.1
805,851 - HGI48_RS03775 0.74 -0.7
805,889 + HGI48_RS03775 0.79 +0.4
805,889 + HGI48_RS03775 0.79 -0.2
805,890 - HGI48_RS03775 0.79 -0.1
805,950 - HGI48_RS03775 0.86 -0.8
805,958 + HGI48_RS03775 0.87 -0.1
805,958 + HGI48_RS03775 0.87 -0.6
805,958 + HGI48_RS03775 0.87 -0.2
805,958 + HGI48_RS03775 0.87 -1.2
805,959 - HGI48_RS03775 0.87 +0.4
805,959 - HGI48_RS03775 0.87 +0.4
805,959 - HGI48_RS03775 0.87 -0.3
805,959 - HGI48_RS03775 0.87 +1.1
805,961 + HGI48_RS03775 0.87 -0.1
805,961 + HGI48_RS03775 0.87 -0.2
805,961 + HGI48_RS03775 0.87 -0.3
805,961 + HGI48_RS03775 0.87 -1.0
805,961 + HGI48_RS03775 0.87 -0.5
805,962 - HGI48_RS03775 0.87 -0.7
805,962 - -0.9
805,962 - +1.9
805,962 - HGI48_RS03775 0.87 +0.3
805,962 - HGI48_RS03775 0.87 +0.6
805,966 + HGI48_RS03775 0.88 -0.3
806,002 + +3.2
806,112 + -0.4
806,113 - -0.3
806,113 - -1.3
806,113 - -0.9
806,113 - -0.9
806,113 - -1.3
806,145 + +0.7
806,145 + -1.2
806,145 + -0.6
806,146 - -1.7
806,172 + +0.4
806,172 + +1.1
806,172 + -0.6
806,173 - +0.5
806,173 - -0.3

Or see this region's nucleotide sequence