Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03720 and HGI48_RS03725 are separated by 149 nucleotides HGI48_RS03725 and HGI48_RS03730 are separated by 312 nucleotides
HGI48_RS03720: HGI48_RS03720 - D-alanine--D-alanine ligase, at 789,893 to 790,993
_RS03720
HGI48_RS03725: HGI48_RS03725 - SIS domain-containing protein, at 791,143 to 792,000
_RS03725
HGI48_RS03730: HGI48_RS03730 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 792,313 to 793,824
_RS03730
Position (kb) 791
792
793 Strain fitness (log2 ratio) -2
-1
0
1
2 at 791.023 kb on - strand at 791.023 kb on - strand at 791.023 kb on - strand at 791.023 kb on - strand at 791.023 kb on - strand at 791.023 kb on - strand at 791.023 kb on - strand at 791.072 kb on - strand at 791.314 kb on + strand, within HGI48_RS03725 at 791.314 kb on + strand, within HGI48_RS03725 at 791.315 kb on - strand, within HGI48_RS03725 at 791.513 kb on + strand at 791.513 kb on + strand at 791.522 kb on + strand, within HGI48_RS03725 at 791.522 kb on + strand, within HGI48_RS03725 at 791.522 kb on + strand, within HGI48_RS03725 at 791.522 kb on + strand, within HGI48_RS03725 at 791.522 kb on + strand, within HGI48_RS03725 at 791.523 kb on - strand, within HGI48_RS03725 at 791.561 kb on + strand at 791.561 kb on + strand at 791.561 kb on + strand at 791.561 kb on + strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.562 kb on - strand, within HGI48_RS03725 at 791.565 kb on + strand, within HGI48_RS03725 at 791.565 kb on + strand, within HGI48_RS03725 at 791.565 kb on + strand, within HGI48_RS03725 at 791.565 kb on + strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.566 kb on - strand, within HGI48_RS03725 at 791.585 kb on - strand, within HGI48_RS03725 at 791.585 kb on - strand, within HGI48_RS03725 at 791.739 kb on - strand, within HGI48_RS03725 at 791.827 kb on - strand, within HGI48_RS03725 at 791.843 kb on - strand, within HGI48_RS03725 at 791.843 kb on - strand, within HGI48_RS03725 at 791.910 kb on - strand, within HGI48_RS03725 at 791.910 kb on - strand, within HGI48_RS03725 at 791.971 kb on + strand at 791.972 kb on - strand at 791.972 kb on - strand at 792.000 kb on + strand at 792.001 kb on - strand at 792.108 kb on - strand at 792.160 kb on + strand at 792.172 kb on - strand at 792.308 kb on + strand at 792.308 kb on + strand at 792.309 kb on - strand at 792.309 kb on - strand at 792.309 kb on - strand at 792.309 kb on - strand at 792.309 kb on - strand at 792.309 kb on - strand at 792.309 kb on - strand at 792.596 kb on - strand, within HGI48_RS03730 at 792.596 kb on - strand, within HGI48_RS03730 at 792.798 kb on - strand at 792.906 kb on - strand, within HGI48_RS03730 at 792.910 kb on - strand at 792.910 kb on - strand at 792.910 kb on - strand, within HGI48_RS03730
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 791,023 - -0.9 791,023 - -1.0 791,023 - +0.5 791,023 - +0.8 791,023 - -0.7 791,023 - +1.4 791,023 - -0.8 791,072 - +0.6 791,314 + HGI48_RS03725 0.20 -0.5 791,314 + HGI48_RS03725 0.20 +0.8 791,315 - HGI48_RS03725 0.20 -0.4 791,513 + +0.1 791,513 + -0.9 791,522 + HGI48_RS03725 0.44 -1.9 791,522 + HGI48_RS03725 0.44 -2.5 791,522 + HGI48_RS03725 0.44 +1.2 791,522 + HGI48_RS03725 0.44 +0.4 791,522 + HGI48_RS03725 0.44 +0.2 791,523 - HGI48_RS03725 0.44 +0.2 791,561 + +2.6 791,561 + +0.1 791,561 + +0.1 791,561 + HGI48_RS03725 0.49 +0.2 791,562 - HGI48_RS03725 0.49 +0.6 791,562 - HGI48_RS03725 0.49 +0.8 791,562 - HGI48_RS03725 0.49 +0.6 791,562 - HGI48_RS03725 0.49 +0.9 791,562 - HGI48_RS03725 0.49 -0.1 791,562 - HGI48_RS03725 0.49 -0.1 791,562 - HGI48_RS03725 0.49 -0.8 791,562 - HGI48_RS03725 0.49 +0.8 791,565 + HGI48_RS03725 0.49 +2.2 791,565 + HGI48_RS03725 0.49 +0.6 791,565 + HGI48_RS03725 0.49 -1.4 791,565 + HGI48_RS03725 0.49 +0.4 791,566 - HGI48_RS03725 0.49 -1.9 791,566 - HGI48_RS03725 0.49 +0.6 791,566 - HGI48_RS03725 0.49 +0.7 791,566 - HGI48_RS03725 0.49 +0.7 791,566 - HGI48_RS03725 0.49 -0.0 791,566 - HGI48_RS03725 0.49 +1.1 791,566 - HGI48_RS03725 0.49 -0.4 791,566 - HGI48_RS03725 0.49 +0.6 791,566 - HGI48_RS03725 0.49 +0.6 791,585 - HGI48_RS03725 0.52 +0.5 791,585 - HGI48_RS03725 0.52 +1.5 791,739 - HGI48_RS03725 0.69 +0.1 791,827 - HGI48_RS03725 0.80 -0.6 791,843 - HGI48_RS03725 0.82 +1.2 791,843 - HGI48_RS03725 0.82 -1.7 791,910 - HGI48_RS03725 0.89 +0.6 791,910 - HGI48_RS03725 0.89 -0.2 791,971 + -2.2 791,972 - -1.4 791,972 - -1.2 792,000 + +1.2 792,001 - +0.9 792,108 - -1.9 792,160 + +0.2 792,172 - +0.1 792,308 + -1.4 792,308 + +1.2 792,309 - -0.8 792,309 - -1.9 792,309 - -0.9 792,309 - -0.8 792,309 - +1.2 792,309 - +0.6 792,309 - +0.6 792,596 - HGI48_RS03730 0.19 -0.5 792,596 - HGI48_RS03730 0.19 -1.2 792,798 - -0.9 792,906 - HGI48_RS03730 0.39 -0.9 792,910 - -0.4 792,910 - +1.1 792,910 - HGI48_RS03730 0.39 +0.9
Or see this region's nucleotide sequence