Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03435 and HGI48_RS03440 are separated by 272 nucleotides HGI48_RS03440 and HGI48_RS03445 are separated by 89 nucleotides HGI48_RS03445 and HGI48_RS03450 are separated by 57 nucleotides
HGI48_RS03435: HGI48_RS03435 - MHS family MFS transporter, at 720,933 to 722,258
_RS03435
HGI48_RS03440: HGI48_RS03440 - site-specific tyrosine recombinase XerD, at 722,531 to 723,430
_RS03440
HGI48_RS03445: HGI48_RS03445 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 723,520 to 724,236
_RS03445
HGI48_RS03450: HGI48_RS03450 - single-stranded-DNA-specific exonuclease RecJ, at 724,294 to 726,024
_RS03450
Position (kb) 722
723
724 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 721.615 kb on + strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand at 721.772 kb on - strand, within HGI48_RS03435 at 721.891 kb on - strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.929 kb on + strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 722.007 kb on + strand, within HGI48_RS03435 at 722.129 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.140 kb on + strand at 722.205 kb on + strand at 722.234 kb on + strand at 722.234 kb on + strand at 722.277 kb on - strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.389 kb on - strand at 722.389 kb on - strand at 722.453 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.489 kb on - strand at 722.623 kb on + strand, within HGI48_RS03440 at 723.221 kb on + strand, within HGI48_RS03440 at 723.368 kb on + strand at 723.506 kb on - strand at 723.513 kb on + strand at 723.514 kb on - strand at 723.533 kb on + strand at 723.533 kb on + strand at 723.534 kb on - strand at 723.536 kb on + strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.537 kb on - strand at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.694 kb on + strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand, within HGI48_RS03445 at 723.695 kb on - strand at 723.695 kb on - strand, within HGI48_RS03445 at 723.777 kb on + strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.778 kb on - strand, within HGI48_RS03445 at 723.824 kb on - strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.852 kb on + strand, within HGI48_RS03445 at 723.853 kb on - strand, within HGI48_RS03445 at 723.905 kb on + strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.906 kb on - strand, within HGI48_RS03445 at 723.914 kb on - strand, within HGI48_RS03445 at 723.915 kb on + strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.916 kb on - strand, within HGI48_RS03445 at 723.941 kb on - strand, within HGI48_RS03445 at 723.950 kb on - strand, within HGI48_RS03445 at 724.071 kb on + strand, within HGI48_RS03445 at 724.260 kb on - strand at 724.276 kb on + strand at 724.276 kb on + strand at 724.277 kb on - strand at 724.277 kb on - strand at 724.379 kb on - strand at 724.394 kb on + strand at 724.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 721,615 + HGI48_RS03435 0.51 +0.7 721,615 + HGI48_RS03435 0.51 +1.0 721,616 - HGI48_RS03435 0.52 +0.3 721,616 - HGI48_RS03435 0.52 +0.3 721,616 - HGI48_RS03435 0.52 +0.3 721,616 - HGI48_RS03435 0.52 +2.0 721,616 - HGI48_RS03435 0.52 -0.3 721,616 - -0.9 721,772 - HGI48_RS03435 0.63 -1.0 721,891 - HGI48_RS03435 0.72 -0.3 721,906 + HGI48_RS03435 0.73 +0.1 721,906 + HGI48_RS03435 0.73 -0.9 721,906 + HGI48_RS03435 0.73 +0.7 721,907 - HGI48_RS03435 0.73 -0.3 721,907 - HGI48_RS03435 0.73 -1.3 721,929 + HGI48_RS03435 0.75 +0.1 721,930 - HGI48_RS03435 0.75 +0.7 721,930 - HGI48_RS03435 0.75 +0.3 722,007 + HGI48_RS03435 0.81 -0.6 722,129 + +0.3 722,134 + +0.4 722,134 + +0.1 722,134 + +3.2 722,134 + -0.2 722,134 + +0.7 722,134 + -0.0 722,134 + -1.3 722,134 + +2.3 722,135 - -0.7 722,135 - -0.2 722,135 - -0.1 722,135 - -0.1 722,135 - -0.6 722,135 - -0.1 722,135 - -2.7 722,140 + +0.7 722,205 + +1.8 722,234 + +0.7 722,234 + -0.9 722,277 - -0.0 722,296 + +1.0 722,296 + -0.1 722,296 + +0.7 722,296 + +0.1 722,296 + -0.3 722,296 + -0.6 722,296 + +0.1 722,296 + -1.3 722,296 + +1.7 722,296 + -0.3 722,297 - +0.4 722,297 - -0.0 722,297 - +0.9 722,297 - +0.3 722,297 - +0.1 722,297 - -1.4 722,297 - -0.3 722,388 + -0.7 722,388 + -0.3 722,388 + +0.1 722,388 + +0.8 722,388 + +0.4 722,389 - -0.3 722,389 - -0.2 722,453 + -0.3 722,464 + +0.3 722,464 + -0.1 722,464 + +0.3 722,489 - -1.0 722,623 + HGI48_RS03440 0.10 -0.1 723,221 + HGI48_RS03440 0.77 -3.0 723,368 + -0.9 723,506 - -0.9 723,513 + -0.4 723,514 - -0.4 723,533 + +1.0 723,533 + -1.5 723,534 - +1.2 723,536 + -0.9 723,537 - +0.1 723,537 - +0.7 723,537 - +0.1 723,537 - +0.7 723,694 + HGI48_RS03445 0.24 -1.7 723,694 + HGI48_RS03445 0.24 +0.1 723,694 + HGI48_RS03445 0.24 -0.7 723,695 - HGI48_RS03445 0.24 -0.5 723,695 - HGI48_RS03445 0.24 -0.3 723,695 - HGI48_RS03445 0.24 -0.0 723,695 - HGI48_RS03445 0.24 +0.2 723,695 - +1.7 723,695 - HGI48_RS03445 0.24 +2.6 723,777 + HGI48_RS03445 0.36 -0.7 723,778 - HGI48_RS03445 0.36 -0.7 723,778 - HGI48_RS03445 0.36 -0.4 723,824 - HGI48_RS03445 0.42 +1.9 723,852 + HGI48_RS03445 0.46 +0.5 723,852 + HGI48_RS03445 0.46 -0.1 723,852 + HGI48_RS03445 0.46 +0.9 723,853 - HGI48_RS03445 0.46 -0.5 723,905 + HGI48_RS03445 0.54 -1.1 723,906 - HGI48_RS03445 0.54 +0.4 723,906 - HGI48_RS03445 0.54 +0.1 723,914 - HGI48_RS03445 0.55 -1.7 723,915 + HGI48_RS03445 0.55 -2.7 723,916 - HGI48_RS03445 0.55 -0.4 723,916 - HGI48_RS03445 0.55 -0.9 723,941 - HGI48_RS03445 0.59 +2.8 723,950 - HGI48_RS03445 0.60 -0.9 724,071 + HGI48_RS03445 0.77 +0.7 724,260 - -0.3 724,276 + -0.7 724,276 + -0.9 724,277 - -0.0 724,277 - -3.2 724,379 - +1.1 724,394 + +0.1 724,395 - -1.1
Or see this region's nucleotide sequence