Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03425 and HGI48_RS03430 are separated by 94 nucleotides HGI48_RS03430 and HGI48_RS03435 are separated by 128 nucleotides HGI48_RS03435 and HGI48_RS03440 are separated by 272 nucleotides
HGI48_RS03425: HGI48_RS03425 - protein YgfX, at 719,760 to 720,191
_RS03425
HGI48_RS03430: HGI48_RS03430 - flavodoxin FldB, at 720,286 to 720,804
_RS03430
HGI48_RS03435: HGI48_RS03435 - MHS family MFS transporter, at 720,933 to 722,258
_RS03435
HGI48_RS03440: HGI48_RS03440 - site-specific tyrosine recombinase XerD, at 722,531 to 723,430
_RS03440
Position (kb) 720
721
722
723 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 720.107 kb on + strand at 720.108 kb on - strand, within HGI48_RS03425 at 720.190 kb on - strand at 720.196 kb on - strand at 720.292 kb on + strand at 720.293 kb on - strand at 720.293 kb on - strand at 720.293 kb on - strand at 720.392 kb on + strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.393 kb on - strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.396 kb on + strand, within HGI48_RS03430 at 720.435 kb on - strand, within HGI48_RS03430 at 720.552 kb on - strand, within HGI48_RS03430 at 720.552 kb on - strand at 720.668 kb on + strand, within HGI48_RS03430 at 720.768 kb on - strand at 720.768 kb on - strand at 720.796 kb on + strand at 720.804 kb on + strand at 720.804 kb on + strand at 720.804 kb on + strand at 720.805 kb on - strand at 720.805 kb on - strand at 720.805 kb on - strand at 720.830 kb on + strand at 720.831 kb on - strand at 720.867 kb on - strand at 720.934 kb on + strand at 721.009 kb on + strand at 721.021 kb on + strand at 721.021 kb on + strand at 721.021 kb on + strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.022 kb on - strand at 721.061 kb on - strand at 721.098 kb on - strand at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.099 kb on + strand, within HGI48_RS03435 at 721.100 kb on - strand, within HGI48_RS03435 at 721.100 kb on - strand, within HGI48_RS03435 at 721.100 kb on - strand at 721.100 kb on - strand, within HGI48_RS03435 at 721.119 kb on - strand, within HGI48_RS03435 at 721.121 kb on - strand, within HGI48_RS03435 at 721.201 kb on - strand, within HGI48_RS03435 at 721.214 kb on + strand, within HGI48_RS03435 at 721.215 kb on - strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.435 kb on + strand, within HGI48_RS03435 at 721.436 kb on - strand, within HGI48_RS03435 at 721.436 kb on - strand, within HGI48_RS03435 at 721.447 kb on + strand, within HGI48_RS03435 at 721.447 kb on + strand, within HGI48_RS03435 at 721.447 kb on + strand at 721.447 kb on + strand, within HGI48_RS03435 at 721.462 kb on + strand, within HGI48_RS03435 at 721.463 kb on - strand, within HGI48_RS03435 at 721.463 kb on - strand, within HGI48_RS03435 at 721.474 kb on + strand at 721.474 kb on + strand at 721.474 kb on + strand, within HGI48_RS03435 at 721.474 kb on + strand, within HGI48_RS03435 at 721.475 kb on - strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.615 kb on + strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand, within HGI48_RS03435 at 721.616 kb on - strand at 721.772 kb on - strand, within HGI48_RS03435 at 721.891 kb on - strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.906 kb on + strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.907 kb on - strand, within HGI48_RS03435 at 721.929 kb on + strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 721.930 kb on - strand, within HGI48_RS03435 at 722.007 kb on + strand, within HGI48_RS03435 at 722.129 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.134 kb on + strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.135 kb on - strand at 722.140 kb on + strand at 722.205 kb on + strand at 722.234 kb on + strand at 722.234 kb on + strand at 722.277 kb on - strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.296 kb on + strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.297 kb on - strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.388 kb on + strand at 722.389 kb on - strand at 722.389 kb on - strand at 722.453 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.464 kb on + strand at 722.489 kb on - strand at 722.623 kb on + strand, within HGI48_RS03440 at 723.221 kb on + strand, within HGI48_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 720,107 + +0.1 720,108 - HGI48_RS03425 0.81 -0.4 720,190 - -0.6 720,196 - +0.4 720,292 + -0.3 720,293 - -0.3 720,293 - +0.4 720,293 - +0.8 720,392 + HGI48_RS03430 0.20 -0.4 720,393 - HGI48_RS03430 0.21 +0.1 720,393 - HGI48_RS03430 0.21 +0.2 720,393 - HGI48_RS03430 0.21 +0.3 720,396 + HGI48_RS03430 0.21 +0.1 720,396 + HGI48_RS03430 0.21 -0.3 720,396 + HGI48_RS03430 0.21 -1.7 720,435 - HGI48_RS03430 0.29 -0.9 720,552 - HGI48_RS03430 0.51 +0.2 720,552 - -0.9 720,668 + HGI48_RS03430 0.74 +1.0 720,768 - -0.7 720,768 - +0.2 720,796 + -0.2 720,804 + +0.1 720,804 + +1.6 720,804 + +0.2 720,805 - -1.3 720,805 - -0.1 720,805 - +0.2 720,830 + +0.7 720,831 - -0.3 720,867 - +1.4 720,934 + -1.3 721,009 + +1.3 721,021 + +1.8 721,021 + -0.1 721,021 + -1.3 721,022 - -0.9 721,022 - -0.3 721,022 - +0.1 721,022 - +0.7 721,022 - -1.9 721,022 - -0.7 721,022 - -1.7 721,022 - -2.0 721,022 - +0.3 721,061 - -0.5 721,098 - +0.7 721,099 + HGI48_RS03435 0.13 -0.9 721,099 + HGI48_RS03435 0.13 -0.3 721,099 + HGI48_RS03435 0.13 +0.4 721,099 + HGI48_RS03435 0.13 -0.0 721,099 + HGI48_RS03435 0.13 +1.0 721,100 - HGI48_RS03435 0.13 +0.3 721,100 - HGI48_RS03435 0.13 -0.3 721,100 - -0.3 721,100 - HGI48_RS03435 0.13 -0.6 721,119 - HGI48_RS03435 0.14 -1.1 721,121 - HGI48_RS03435 0.14 -0.6 721,201 - HGI48_RS03435 0.20 -1.7 721,214 + HGI48_RS03435 0.21 -1.2 721,215 - HGI48_RS03435 0.21 +0.2 721,435 + HGI48_RS03435 0.38 -0.4 721,435 + HGI48_RS03435 0.38 +0.3 721,435 + HGI48_RS03435 0.38 -0.5 721,436 - HGI48_RS03435 0.38 -0.3 721,436 - HGI48_RS03435 0.38 +0.7 721,447 + HGI48_RS03435 0.39 -2.3 721,447 + HGI48_RS03435 0.39 +1.0 721,447 + +2.3 721,447 + HGI48_RS03435 0.39 +0.4 721,462 + HGI48_RS03435 0.40 +0.1 721,463 - HGI48_RS03435 0.40 +2.0 721,463 - HGI48_RS03435 0.40 -2.1 721,474 + +1.3 721,474 + +1.7 721,474 + HGI48_RS03435 0.41 -1.1 721,474 + HGI48_RS03435 0.41 -0.1 721,475 - HGI48_RS03435 0.41 +0.0 721,615 + HGI48_RS03435 0.51 +0.7 721,615 + HGI48_RS03435 0.51 +1.0 721,616 - HGI48_RS03435 0.52 +0.3 721,616 - HGI48_RS03435 0.52 +0.3 721,616 - HGI48_RS03435 0.52 +0.3 721,616 - HGI48_RS03435 0.52 +2.0 721,616 - HGI48_RS03435 0.52 -0.3 721,616 - -0.9 721,772 - HGI48_RS03435 0.63 -1.0 721,891 - HGI48_RS03435 0.72 -0.3 721,906 + HGI48_RS03435 0.73 +0.1 721,906 + HGI48_RS03435 0.73 -0.9 721,906 + HGI48_RS03435 0.73 +0.7 721,907 - HGI48_RS03435 0.73 -0.3 721,907 - HGI48_RS03435 0.73 -1.3 721,929 + HGI48_RS03435 0.75 +0.1 721,930 - HGI48_RS03435 0.75 +0.7 721,930 - HGI48_RS03435 0.75 +0.3 722,007 + HGI48_RS03435 0.81 -0.6 722,129 + +0.3 722,134 + +0.4 722,134 + +0.1 722,134 + +3.2 722,134 + -0.2 722,134 + +0.7 722,134 + -0.0 722,134 + -1.3 722,134 + +2.3 722,135 - -0.7 722,135 - -0.2 722,135 - -0.1 722,135 - -0.1 722,135 - -0.6 722,135 - -0.1 722,135 - -2.7 722,140 + +0.7 722,205 + +1.8 722,234 + +0.7 722,234 + -0.9 722,277 - -0.0 722,296 + +1.0 722,296 + -0.1 722,296 + +0.7 722,296 + +0.1 722,296 + -0.3 722,296 + -0.6 722,296 + +0.1 722,296 + -1.3 722,296 + +1.7 722,296 + -0.3 722,297 - +0.4 722,297 - -0.0 722,297 - +0.9 722,297 - +0.3 722,297 - +0.1 722,297 - -1.4 722,297 - -0.3 722,388 + -0.7 722,388 + -0.3 722,388 + +0.1 722,388 + +0.8 722,388 + +0.4 722,389 - -0.3 722,389 - -0.2 722,453 + -0.3 722,464 + +0.3 722,464 + -0.1 722,464 + +0.3 722,489 - -1.0 722,623 + HGI48_RS03440 0.10 -0.1 723,221 + HGI48_RS03440 0.77 -3.0
Or see this region's nucleotide sequence