Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03240 and HGI48_RS03245 are separated by 74 nucleotides HGI48_RS03245 and HGI48_RS03250 overlap by 1 nucleotides HGI48_RS03250 and HGI48_RS03255 are separated by 108 nucleotides HGI48_RS03255 and HGI48_RS03260 are separated by 250 nucleotides
HGI48_RS03240: HGI48_RS03240 - translation initiation factor IF-2, at 683,187 to 685,904
_RS03240
HGI48_RS03245: HGI48_RS03245 - 30S ribosome-binding factor RbfA, at 685,979 to 686,380
_RS03245
HGI48_RS03250: HGI48_RS03250 - tRNA pseudouridine(55) synthase TruB, at 686,380 to 687,336
_RS03250
HGI48_RS03255: HGI48_RS03255 - 30S ribosomal protein S15, at 687,445 to 687,714
_RS03255
HGI48_RS03260: HGI48_RS03260 - polyribonucleotide nucleotidyltransferase, at 687,965 to 690,085
_RS03260
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2 at 686.347 kb on + strand at 686.379 kb on - strand at 686.474 kb on + strand at 686.475 kb on - strand at 686.508 kb on + strand, within HGI48_RS03250 at 686.509 kb on - strand, within HGI48_RS03250 at 686.509 kb on - strand, within HGI48_RS03250 at 686.509 kb on - strand, within HGI48_RS03250 at 686.598 kb on + strand, within HGI48_RS03250 at 686.598 kb on + strand at 686.640 kb on + strand, within HGI48_RS03250 at 686.658 kb on + strand, within HGI48_RS03250 at 686.658 kb on + strand at 686.658 kb on + strand, within HGI48_RS03250 at 686.658 kb on + strand, within HGI48_RS03250 at 686.756 kb on - strand at 686.756 kb on - strand, within HGI48_RS03250 at 686.756 kb on - strand, within HGI48_RS03250 at 686.756 kb on - strand, within HGI48_RS03250 at 686.770 kb on + strand, within HGI48_RS03250 at 686.846 kb on - strand, within HGI48_RS03250 at 686.853 kb on - strand, within HGI48_RS03250 at 686.853 kb on - strand, within HGI48_RS03250 at 686.914 kb on + strand at 686.914 kb on + strand, within HGI48_RS03250 at 686.914 kb on + strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.915 kb on - strand, within HGI48_RS03250 at 686.928 kb on + strand, within HGI48_RS03250 at 686.974 kb on + strand, within HGI48_RS03250 at 686.974 kb on + strand, within HGI48_RS03250 at 686.975 kb on - strand, within HGI48_RS03250 at 687.001 kb on + strand, within HGI48_RS03250 at 687.141 kb on + strand, within HGI48_RS03250 at 687.142 kb on - strand, within HGI48_RS03250 at 687.176 kb on + strand, within HGI48_RS03250 at 687.713 kb on - strand at 687.713 kb on - strand at 687.713 kb on - strand at 687.785 kb on - strand at 687.789 kb on + strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.790 kb on - strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.800 kb on + strand at 687.801 kb on - strand at 687.804 kb on + strand at 687.804 kb on + strand at 687.805 kb on - strand at 687.818 kb on - strand at 687.849 kb on - strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.891 kb on + strand at 687.892 kb on - strand at 687.892 kb on - strand at 687.910 kb on + strand at 687.911 kb on - strand at 687.911 kb on - strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.924 kb on + strand at 687.925 kb on - strand at 687.951 kb on + strand at 687.951 kb on + strand at 687.962 kb on - strand at 687.962 kb on - strand at 688.006 kb on + strand at 688.064 kb on - strand at 688.064 kb on - strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.066 kb on + strand at 688.084 kb on - strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.151 kb on + strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.152 kb on - strand at 688.162 kb on + strand at 688.163 kb on - strand at 688.163 kb on - strand at 688.166 kb on + strand at 688.167 kb on - strand at 688.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 686,347 + -1.6 686,379 - -1.9 686,474 + -1.3 686,475 - +0.4 686,508 + HGI48_RS03250 0.13 +1.4 686,509 - HGI48_RS03250 0.13 -1.4 686,509 - HGI48_RS03250 0.13 +1.5 686,509 - HGI48_RS03250 0.13 +0.9 686,598 + HGI48_RS03250 0.23 -0.3 686,598 + +1.1 686,640 + HGI48_RS03250 0.27 -1.3 686,658 + HGI48_RS03250 0.29 +0.3 686,658 + +0.1 686,658 + HGI48_RS03250 0.29 -1.6 686,658 + HGI48_RS03250 0.29 -0.3 686,756 - -0.3 686,756 - HGI48_RS03250 0.39 -1.1 686,756 - HGI48_RS03250 0.39 -0.3 686,756 - HGI48_RS03250 0.39 -1.3 686,770 + HGI48_RS03250 0.41 -1.0 686,846 - HGI48_RS03250 0.49 +0.3 686,853 - HGI48_RS03250 0.49 +0.7 686,853 - HGI48_RS03250 0.49 -0.5 686,914 + +0.1 686,914 + HGI48_RS03250 0.56 -1.6 686,914 + HGI48_RS03250 0.56 -0.5 686,915 - HGI48_RS03250 0.56 +0.9 686,915 - HGI48_RS03250 0.56 -0.8 686,915 - HGI48_RS03250 0.56 -1.1 686,915 - HGI48_RS03250 0.56 -0.3 686,915 - HGI48_RS03250 0.56 +1.0 686,928 + HGI48_RS03250 0.57 -0.6 686,974 + HGI48_RS03250 0.62 -0.6 686,974 + HGI48_RS03250 0.62 -1.3 686,975 - HGI48_RS03250 0.62 +0.9 687,001 + HGI48_RS03250 0.65 +0.5 687,141 + HGI48_RS03250 0.80 -1.6 687,142 - HGI48_RS03250 0.80 -2.1 687,176 + HGI48_RS03250 0.83 -1.6 687,713 - -1.5 687,713 - +0.1 687,713 - +0.3 687,785 - -1.9 687,789 + -1.1 687,790 - +0.7 687,790 - -0.1 687,790 - +2.0 687,790 - -1.1 687,790 - -0.9 687,790 - +0.3 687,800 + -0.7 687,800 + +0.1 687,800 + +0.7 687,801 - -1.6 687,804 + -0.1 687,804 + +0.7 687,805 - -0.9 687,818 - +0.1 687,849 - +1.0 687,891 + -0.4 687,891 + -0.3 687,891 + +0.3 687,891 + -0.3 687,891 + +0.7 687,891 + +1.3 687,892 - +0.2 687,892 - -0.6 687,910 + -1.9 687,911 - -2.6 687,911 - -0.5 687,924 + +0.3 687,924 + -2.1 687,924 + -0.9 687,925 - -0.3 687,951 + -1.6 687,951 + -0.3 687,962 - -0.9 687,962 - -0.7 688,006 + -0.5 688,064 - -0.1 688,064 - -0.5 688,066 + +0.7 688,066 + -0.5 688,066 + -1.9 688,084 - -0.1 688,151 + -0.6 688,151 + -0.6 688,151 + -2.3 688,152 - +0.5 688,152 - -0.7 688,152 - -1.1 688,152 - -0.5 688,152 - -0.9 688,152 - -0.8 688,162 + +0.7 688,163 - -0.3 688,163 - -1.0 688,166 + -0.1 688,167 - +1.2 688,167 - +0.1
Or see this region's nucleotide sequence